Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_B19-1
(302 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic (8 kDa... 52 6e-07
sp|O02414|DYL1_ANTCR Dynein light chain LC6, flagellar oute... 52 6e-07
sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic (8 k... 51 7e-07
sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic 51 1e-06
sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic (8 k... 51 1e-06
sp|O96860|DYL2_DROME Dynein light chain 2, cytoplasmic (8 k... 51 1e-06
sp|Q94758|DYL1_SCHMA Dynein light chain 51 1e-06
sp|Q39580|DYL1_CHLRE Dynein 8 kDa light chain, flagellar ou... 50 1e-06
sp|Q94748|DYL2_SCHMA Probable dynein light chain (T-cell-st... 48 6e-06
sp|Q9UR05|DYL1_SCHPO Dynein light chain 1, cytoplasmic 47 1e-05
>sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8)
(Protein inhibitor of neuronal nitric oxide synthase)
(PIN)
sp|P63167|DYL1_HUMAN Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8)
(Protein inhibitor of neuronal nitric oxide synthase)
(PIN)
sp|P63168|DYL1_MOUSE Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8)
(Protein inhibitor of neuronal nitric oxide synthase)
(PIN) (mPIN)
sp|P61285|DYL1_BOVIN Dynein light chain 1, cytoplasmic
sp|P61273|DYL1_MACFA Dynein light chain 1, cytoplasmic
sp|P63169|DYL1_RABIT Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8)
(Protein inhibitor of neuronal nitric oxide synthase)
(PIN)
Length = 89
Score = 51.6 bits (122), Expect = 6e-07
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +2
Query: 29 QKLETSAERAKEIKSRLDREFEGSWQCIVGKNFATYVSHEEHKFCHLKVGNQTGVQVFKA 208
+K + A IK D+++ +W CIVG+NF +YV+HE F + +G Q + +FK+
Sbjct: 30 EKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLG-QVAILLFKS 88
Query: 209 G 211
G
Sbjct: 89 G 89
>sp|O02414|DYL1_ANTCR Dynein light chain LC6, flagellar outer arm
Length = 89
Score = 51.6 bits (122), Expect = 6e-07
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +2
Query: 29 QKLETSAERAKEIKSRLDREFEGSWQCIVGKNFATYVSHEEHKFCHLKVGNQTGVQVFKA 208
+K + A IK D+++ +W CIVG+NF +YV+HE F + +G Q V +FK+
Sbjct: 30 EKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLG-QVAVLLFKS 88
Query: 209 G 211
G
Sbjct: 89 G 89
>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (Cut
up protein)
Length = 89
Score = 51.2 bits (121), Expect = 7e-07
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +2
Query: 29 QKLETSAERAKEIKSRLDREFEGSWQCIVGKNFATYVSHEEHKFCHLKVGNQTGVQVFKA 208
+K + A IK D+++ +W CIVG+NF +YV+HE F + +G Q + +FK+
Sbjct: 30 EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLG-QVAILLFKS 88
Query: 209 G 211
G
Sbjct: 89 G 89
>sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic
Length = 89
Score = 50.8 bits (120), Expect = 1e-06
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +2
Query: 29 QKLETSAERAKEIKSRLDREFEGSWQCIVGKNFATYVSHEEHKFCHLKVGNQTGVQVFKA 208
+K + A IK D+++ +W CIVG+NF +YV+HE F + +G Q + +FK+
Sbjct: 30 EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLG-QVAILLFKS 88
Query: 209 G 211
G
Sbjct: 89 G 89
>sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic (8 kDa dynein light chain) (DLC8)
(DLC8b)
sp|Q96FJ2|DYL2_HUMAN Dynein light chain 2, cytoplasmic
sp|Q78P75|DYL2_RAT Dynein light chain 2, cytoplasmic
Length = 89
Score = 50.8 bits (120), Expect = 1e-06
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +2
Query: 29 QKLETSAERAKEIKSRLDREFEGSWQCIVGKNFATYVSHEEHKFCHLKVGNQTGVQVFKA 208
+K + A IK D+++ +W CIVG+NF +YV+HE F + +G Q + +FK+
Sbjct: 30 EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLG-QVAILLFKS 88
Query: 209 G 211
G
Sbjct: 89 G 89
>sp|O96860|DYL2_DROME Dynein light chain 2, cytoplasmic (8 kDa dynein light chain)
Length = 89
Score = 50.8 bits (120), Expect = 1e-06
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +2
Query: 29 QKLETSAERAKEIKSRLDREFEGSWQCIVGKNFATYVSHEEHKFCHLKVGNQTGVQVFKA 208
+K + A IK D+++ +W CIVG+NF +YV+HE F + +G Q + +FK+
Sbjct: 30 EKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLG-QVAILLFKS 88
Query: 209 G 211
G
Sbjct: 89 G 89
>sp|Q94758|DYL1_SCHMA Dynein light chain
Length = 89
Score = 50.8 bits (120), Expect = 1e-06
Identities = 23/67 (34%), Positives = 39/67 (58%)
Frame = +2
Query: 11 IVADVFQKLETSAERAKEIKSRLDREFEGSWQCIVGKNFATYVSHEEHKFCHLKVGNQTG 190
I A K + + A IK DR++ +W CIVG++F +YV+HE H F + + ++
Sbjct: 24 IAAGAIDKHDLEKDIAANIKKDFDRKYHPTWHCIVGRHFGSYVTHETHNFIYFYLDDRAF 83
Query: 191 VQVFKAG 211
+ +FK+G
Sbjct: 84 L-LFKSG 89
>sp|Q39580|DYL1_CHLRE Dynein 8 kDa light chain, flagellar outer arm
Length = 91
Score = 50.4 bits (119), Expect = 1e-06
Identities = 23/61 (37%), Positives = 35/61 (57%)
Frame = +2
Query: 29 QKLETSAERAKEIKSRLDREFEGSWQCIVGKNFATYVSHEEHKFCHLKVGNQTGVQVFKA 208
+K + A IK DR+ +W CIVG+NF +YV+HE F + +G Q + +FK+
Sbjct: 32 EKYNIEKDIAAYIKKEFDRKHNPTWHCIVGRNFGSYVTHETKHFIYFYLG-QVAILLFKS 90
Query: 209 G 211
G
Sbjct: 91 G 91
>sp|Q94748|DYL2_SCHMA Probable dynein light chain (T-cell-stimulating antigen SM10)
Length = 89
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = +2
Query: 17 ADVFQKLETSAERAKEIKSRLDREFEGSWQCIVGKNFATYVSHEEHKFCHLKVGNQTGVQ 196
A K E + A IK DR++ +W CIVGK+F +YV+HE F + + +
Sbjct: 26 AAALDKYEIEKDVAAYIKKEFDRKYNPNWHCIVGKHFGSYVTHETQHFIYFYL-QERAFL 84
Query: 197 VFKAG 211
+FK+G
Sbjct: 85 LFKSG 89
>sp|Q9UR05|DYL1_SCHPO Dynein light chain 1, cytoplasmic
Length = 85
Score = 47.0 bits (110), Expect = 1e-05
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +2
Query: 29 QKLETSAERAKEIKSRLDREFEGSWQCIVGKNFATYVSHEEHKFCHLKVGNQTGVQVFKA 208
+K + A IK D++F +W CIVG+NF ++V+HE F + +G +FK+
Sbjct: 26 EKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSFVTHESRHFIYFYLGT-VAFLLFKS 84
Query: 209 G 211
G
Sbjct: 85 G 85
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,768,876
Number of Sequences: 369166
Number of extensions: 527464
Number of successful extensions: 1397
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)