Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_B07
(418 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase II (Nucleolar ... 37 0.021
sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase II (Nucleolar ... 36 0.028
sp|Q9BQ39|DDX50_HUMAN DEAD-box protein 50 (Nucleolar protei... 29 3.4
sp|P24043|LAMA2_HUMAN Laminin alpha-2 chain precursor (Lami... 28 7.5
sp|Q99MJ9|DDX50_MOUSE DEAD-box protein 50 (Nucleolar protei... 28 7.5
sp|Q60675|LAMA2_MOUSE Laminin alpha-2 chain precursor (Lami... 28 7.5
sp|Q01217|ARG56_YEAST Protein ARG5,6, mitochondrial precurs... 28 9.8
sp|P70670|NACAM_MOUSE Nascent polypeptide-associated comple... 28 9.8
>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase II (Nucleolar RNA helicase Gu) (RH II/Gu)
(Gu-alpha) (DEAD-box protein 21)
Length = 851
Score = 36.6 bits (83), Expect = 0.021
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +1
Query: 16 YAYSALKKFLPAEIVEQVKSLQFVKGRKSLVFDLSSDHDEIVSTNWVDSKFNQLT 180
YA+ LK+ L I +VK + F+KG+ + FD+ ++ + W DS+ QLT
Sbjct: 724 YAWKELKEQLGESIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDSRRWQLT 778
>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase II (Nucleolar RNA helicase Gu) (RH II/Gu)
(Gu-alpha) (DEAD-box protein 21)
Length = 783
Score = 36.2 bits (82), Expect = 0.028
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +1
Query: 16 YAYSALKKFLPAEIVEQVKSLQFVKGRKSLVFDLSSDHDEIVSTNWVDSKFNQLT 180
YA+ LK+ L EI +VK + F+KG+ + FD+ + + W DS+ QL+
Sbjct: 652 YAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLS 706
>sp|Q9BQ39|DDX50_HUMAN DEAD-box protein 50 (Nucleolar protein Gu2) (Gu-beta)
Length = 737
Score = 29.3 bits (64), Expect = 3.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 19 AYSALKKFLPAEIVEQVKSLQFVKGRKSLVFDLSSDHDEIVSTNWVDS 162
A+ L + L + V Q+ + +KG + FD+ + E + W DS
Sbjct: 604 AWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAEWHDS 651
>sp|P24043|LAMA2_HUMAN Laminin alpha-2 chain precursor (Laminin M chain) (Merosin heavy
chain)
Length = 3110
Score = 28.1 bits (61), Expect = 7.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 4 KFKGYAYSALKKFLPAEIVEQVKSLQFVKGRKSLVFDLSSDHDEIVST-NWVDSKFNQLT 180
KF+ ++ SAL +L + S++ G + +DL S +VS N D K+ T
Sbjct: 2367 KFRTFSSSALLMYLATRDLRDFMSVELTDGHIKVSYDLGSGMASVVSNQNHNDGKWKSFT 2426
>sp|Q99MJ9|DDX50_MOUSE DEAD-box protein 50 (Nucleolar protein Gu2) (Gu-beta)
Length = 734
Score = 28.1 bits (61), Expect = 7.5
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 19 AYSALKKFLPAEIVEQVKSLQFVKGRKSLVFDLSSDHDEIVSTNWVDS 162
A+ L + L + V V + +KG + FD+ + E + W DS
Sbjct: 601 AWKELNRKLSSNAVSHVTRMCLLKGNMGVCFDVPTSESERLQAEWHDS 648
>sp|Q60675|LAMA2_MOUSE Laminin alpha-2 chain precursor (Laminin M chain) (Merosin heavy
chain)
Length = 3106
Score = 28.1 bits (61), Expect = 7.5
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 4 KFKGYAYSALKKFLPAEIVEQVKSLQFVKGRKSLVFDLSSDHDEIVST-NWVDSKFNQLT 180
KF+ ++ SAL +L ++ S++ G + +DL S +VS N D K+ T
Sbjct: 2363 KFRTFSSSALLMYLATRDLKDFMSVELSDGHVKVSYDLGSGMTSVVSNQNHNDGKWKAFT 2422
>sp|Q01217|ARG56_YEAST Protein ARG5,6, mitochondrial precursor [Contains:
N-acetyl-gamma-glutamyl-phosphate reductase
(N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA
dehydrogenase); Acetylglutamate kinase (NAG kinase)
(AGK) (N-acetyl-L-glutamate 5-phosphotransferase)]
Length = 863
Score = 27.7 bits (60), Expect = 9.8
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 43 LPAEIVEQ-VKSLQFVKGRKSLVFDLSSDHDEIVSTNW 153
LP ++ E V+++Q V G KS + DLS+DH + ++W
Sbjct: 615 LPNKVCEPFVETIQSVHG-KSKIIDLSADHRFVSESDW 651
>sp|P70670|NACAM_MOUSE Nascent polypeptide-associated complex alpha subunit, muscle-specific
form (Alpha-NAC, muscle-specific form)
Length = 2187
Score = 27.7 bits (60), Expect = 9.8
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 142 KRFHRDPTINRKLAISSP*RTAAISLVQQFLPGGISSMP 26
K ++ T N LA SS R+ S+ ++ PGG+++MP
Sbjct: 1104 KETPQNATPNESLAASSQKRSPKTSVPKETPPGGVTAMP 1142
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,435,954
Number of Sequences: 369166
Number of extensions: 503498
Number of successful extensions: 830
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)