Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_B02
(903 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9GLE3|CATK_PIG Cathepsin K precursor 271 1e-72
sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (C... 270 4e-72
sp|P61277|CATK_MACMU Cathepsin K precursor >gi|47117667|sp|... 270 4e-72
sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein) 268 1e-71
sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine protei... 268 2e-71
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 267 3e-71
sp|P55097|CATK_MOUSE Cathepsin K precursor 266 4e-71
sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor 266 8e-71
sp|O35186|CATK_RAT Cathepsin K precursor 265 1e-70
sp|P25782|CYSP2_HOMAM Digestive cysteine proteinase 2 precu... 265 1e-70
>sp|Q9GLE3|CATK_PIG Cathepsin K precursor
Length = 330
Score = 271 bits (694), Expect = 1e-72
Identities = 136/303 (44%), Positives = 196/303 (64%), Gaps = 7/303 (2%)
Frame = +1
Query: 10 LIIIEFTQFITSNLIINEEFNAEWQVFKTKFNKNYTA-IDELIRKTIWIENIKYIQHHNV 186
L ++ ++S L E + +W+++K + K Y + +DE+ R+ IW +N+K+I HN+
Sbjct: 4 LKVVLLLPVMSSALYPEEILDTQWELWKKTYRKQYNSKVDEISRRLIWEKNLKHISIHNL 63
Query: 187 KYDLGHHSHSLGINEFSDLTYKEFEK----LYLLSKNIEYNDGIDYLPPLNIDNLPDSVD 354
+ LG H++ L +N D+T +E + L + + ND + Y+P PDS+D
Sbjct: 64 EASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSHSRSNDTL-YIPDWE-GRTPDSID 121
Query: 355 WRTKGYVTNVKNQGQCGSCWAFSTTGSLEGQHFRKHKVLQNISEQQLVDCVTKNSGCNGG 534
+R KGYVT VKNQGQCGSCWAFS+ G+LEGQ +K L N+S Q LVDCV++N GC GG
Sbjct: 122 YRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGG 181
Query: 535 WMNIAFEYI-SSHGIESEDNYPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVA 711
+M AF+Y+ + GI+SED YPY + NC+++ + A C+G++ I NEK L AVA
Sbjct: 182 YMTNAFQYVQKNRGIDSEDAYPYVGQDENCMYNPTGKAAKCRGYREIPEGNEKALKRAVA 241
Query: 712 TVGPISVAIDVGY-SFQQYKQGVYYEAKCDPTIQNHAVLVVGYGVENGHKYWLVKNSWGP 888
VGP+SVAID SFQ Y +GVYY+ C+ NHAVL VGYG++ G K+W++KNSWG
Sbjct: 242 RVGPVSVAIDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVGYGIQKGKKHWIIKNSWGE 301
Query: 889 SWG 897
+WG
Sbjct: 302 NWG 304
>sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (Cathepsin X) (Cathepsin O2)
Length = 329
Score = 270 bits (690), Expect = 4e-72
Identities = 134/285 (47%), Positives = 189/285 (66%), Gaps = 6/285 (2%)
Frame = +1
Query: 61 EEFNAEWQVFKTKFNKNYT-AIDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFS 237
E + W+++K K Y +DE+ R+ IW +N+KYI HN++ LG H++ L +N
Sbjct: 20 EILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLG 79
Query: 238 DLTYKEF-EKLYLLSKNIEYNDGID--YLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCGS 408
D+T +E +K+ L + ++ D Y+P PDSVD+R KGYVT VKNQGQCGS
Sbjct: 80 DMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWE-GRAPDSVDYRKKGYVTPVKNQGQCGS 138
Query: 409 CWAFSTTGSLEGQHFRKHKVLQNISEQQLVDCVTKNSGCNGGWMNIAFEYI-SSHGIESE 585
CWAFS+ G+LEGQ +K L N+S Q LVDCV++N GC GG+M AF+Y+ + GI+SE
Sbjct: 139 CWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSE 198
Query: 586 DNYPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQQ 762
D YPY ++ +C+++ + A C+G++ I NEK L AVA VGP+SVAID SFQ
Sbjct: 199 DAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQF 258
Query: 763 YKQGVYYEAKCDPTIQNHAVLVVGYGVENGHKYWLVKNSWGPSWG 897
Y +GVYY+ C+ NHAVL VGYG++ G+K+W++KNSWG +WG
Sbjct: 259 YSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWG 303
>sp|P61277|CATK_MACMU Cathepsin K precursor
sp|P61276|CATK_MACFA Cathepsin K precursor
Length = 329
Score = 270 bits (690), Expect = 4e-72
Identities = 134/286 (46%), Positives = 190/286 (66%), Gaps = 7/286 (2%)
Frame = +1
Query: 61 EEFNAEWQVFKTKFNKNYTA-IDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFS 237
E + W+++K K Y + +DE+ R+ IW +N+KYI HN++ LG H++ L +N
Sbjct: 20 EILDTHWELWKKTHRKQYNSKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLG 79
Query: 238 DLTYKEFEK----LYLLSKNIEYNDGIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCG 405
D+T +E + L + + + ND + Y+P PDSVD+R KGYVT VKNQGQCG
Sbjct: 80 DMTNEEVVQKMTGLKVPASHSRSNDTL-YIPDWE-GRAPDSVDYRKKGYVTPVKNQGQCG 137
Query: 406 SCWAFSTTGSLEGQHFRKHKVLQNISEQQLVDCVTKNSGCNGGWMNIAFEYI-SSHGIES 582
SCWAFS+ G+LEGQ +K L N+S Q LVDCV++N GC GG+M AF+Y+ + GI+S
Sbjct: 138 SCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDS 197
Query: 583 EDNYPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQ 759
ED YPY ++ +C+++ + A C+G++ I NEK L AVA VGP+SVAID SFQ
Sbjct: 198 EDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQ 257
Query: 760 QYKQGVYYEAKCDPTIQNHAVLVVGYGVENGHKYWLVKNSWGPSWG 897
Y +GVYY+ C+ NHAVL VGYG++ G+K+W++KNSWG +WG
Sbjct: 258 FYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWG 303
>sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein)
Length = 329
Score = 268 bits (686), Expect = 1e-71
Identities = 133/286 (46%), Positives = 189/286 (66%), Gaps = 7/286 (2%)
Frame = +1
Query: 61 EEFNAEWQVFKTKFNKNYTA-IDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFS 237
E + +W+++K ++K Y + +DE+ R+ IW +N+K+I HN++ LG H++ L +N
Sbjct: 20 EILDTQWELWKKTYSKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLG 79
Query: 238 DLTYKEFEK----LYLLSKNIEYNDGIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCG 405
D+T +E + L + ND + Y+P PDS+D+R KGYVT VKNQGQCG
Sbjct: 80 DMTSEEVVQKMTGLKVPPSRSHSNDTL-YIPDWE-GRTPDSIDYRKKGYVTPVKNQGQCG 137
Query: 406 SCWAFSTTGSLEGQHFRKHKVLQNISEQQLVDCVTKNSGCNGGWMNIAFEYIS-SHGIES 582
SCWAFS+ G+LEGQ +K L N+S Q LVDCV++N GC GG+M AF+Y+ + GI+S
Sbjct: 138 SCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENYGCGGGYMTNAFQYVQRNRGIDS 197
Query: 583 EDNYPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQ 759
ED YPY + +C+++ + A C+G++ I NEK L AVA VGP+SVAID SFQ
Sbjct: 198 EDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQ 257
Query: 760 QYKQGVYYEAKCDPTIQNHAVLVVGYGVENGHKYWLVKNSWGPSWG 897
Y +GVYY+ C NHAVL VGYG++ G+K+W++KNSWG SWG
Sbjct: 258 FYSKGVYYDENCSSDNVNHAVLAVGYGIQKGNKHWIIKNSWGESWG 303
>sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine proteinase 1) [Contains: Cathepsin
L heavy chain; Cathepsin L light chain]
Length = 341
Score = 268 bits (684), Expect = 2e-71
Identities = 146/289 (50%), Positives = 189/289 (65%), Gaps = 15/289 (5%)
Frame = +1
Query: 76 EWQVFKTKFNKNYT-AIDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFSDLTYK 252
EW FK + KNY +E R I+ EN I HN ++ G S L +N+++DL +
Sbjct: 28 EWHTFKLEHRKNYQDETEERFRLKIFNENKHKIAKHNQRFAEGKVSFKLAVNKYADLLHH 87
Query: 253 EFEKL-----YLLSKNIEYND----GIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCG 405
EF +L Y L K + D G+ ++ P ++ LP SVDWRTKG VT VK+QG CG
Sbjct: 88 EFRQLMNGFNYTLHKQLRAADESFKGVTFISPAHV-TLPKSVDWRTKGAVTAVKDQGHCG 146
Query: 406 SCWAFSTTGSLEGQHFRKHKVLQNISEQQLVDCVTK--NSGCNGGWMNIAFEYISSH-GI 576
SCWAFS+TG+LEGQHFRK VL ++SEQ LVDC TK N+GCNGG M+ AF YI + GI
Sbjct: 147 SCWAFSSTGALEGQHFRKSGVLVSLSEQNLVDCSTKYGNNGCNGGLMDNAFRYIKDNGGI 206
Query: 577 ESEDNYPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-S 753
++E +YPY+A +C F+K V A +GF +I +EK +A AVATVGP+SVAID + S
Sbjct: 207 DTEKSYPYEAIDDSCHFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHES 266
Query: 754 FQQYKQGVYYEAKCDPTIQNHAVLVVGYGV-ENGHKYWLVKNSWGPSWG 897
FQ Y +GVY E +CD +H VLVVG+G E+G YWLVKNSWG +WG
Sbjct: 267 FQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESGEDYWLVKNSWGTTWG 315
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 267 bits (683), Expect = 3e-71
Identities = 140/290 (48%), Positives = 183/290 (63%), Gaps = 8/290 (2%)
Frame = +1
Query: 58 NEEFNAEWQVFKTKFNKNYTAIDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFS 237
++ + +W +K + Y A +E R+ +W +N+K I+ HN +Y G H ++ +N F
Sbjct: 22 DQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFG 81
Query: 238 DLTYKEFEKLYLLSKNIEYNDGIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCGSCWA 417
D+T +EF ++ +N ++ G + PL +D LP SVDWR KGYVT VKNQ QCGSCWA
Sbjct: 82 DMTNEEFRQMMGCFRNQKFRKGKVFREPLFLD-LPKSVDWRKKGYVTPVKNQKQCGSCWA 140
Query: 418 FSTTGSLEGQHFRKHKVLQNISEQQLVDCVTK--NSGCNGGWMNIAFEYISSH-GIESED 588
FS TG+LEGQ FRK L ++SEQ LVDC N GCNGG+M AF+Y+ + G++SE+
Sbjct: 141 FSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEE 200
Query: 589 NYPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQQY 765
+YPY A C + VAN GF + EK L AVATVGPISVA+D G+ SFQ Y
Sbjct: 201 SYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFY 260
Query: 766 KQGVYYEAKCDPTIQNHAVLVVGYGVE----NGHKYWLVKNSWGPSWGMN 903
K G+Y+E C +H VLVVGYG E N KYWLVKNSWGP WG N
Sbjct: 261 KSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSN 310
>sp|P55097|CATK_MOUSE Cathepsin K precursor
Length = 329
Score = 266 bits (681), Expect = 4e-71
Identities = 133/285 (46%), Positives = 185/285 (64%), Gaps = 6/285 (2%)
Frame = +1
Query: 61 EEFNAEWQVFKTKFNKNYTA-IDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFS 237
E + +W+++K K Y + +DE+ R+ IW +N+K I HN++ LG H++ L +N
Sbjct: 20 EMLDTQWELWKKTHQKQYNSKVDEISRRLIWEKNLKQISAHNLEASLGVHTYELAMNHLG 79
Query: 238 DLTYKEFEKLYL---LSKNIEYNDGIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCGS 408
D+T +E + + + Y++ Y P +PDS+D+R KGYVT VKNQGQCGS
Sbjct: 80 DMTSEEVVQKMTGLRIPPSRSYSNDTLYTPEWE-GRVPDSIDYRKKGYVTPVKNQGQCGS 138
Query: 409 CWAFSTTGSLEGQHFRKHKVLQNISEQQLVDCVTKNSGCNGGWMNIAFEYISSH-GIESE 585
CWAFS+ G+LEGQ +K L +S Q LVDCVT+N GC GG+M AF+Y+ + GI+SE
Sbjct: 139 CWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVTENYGCGGGYMTTAFQYVQQNGGIDSE 198
Query: 586 DNYPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQQ 762
D YPY + +C+++ + A C+G++ I NEK L AVA VGPISV+ID SFQ
Sbjct: 199 DAYPYVGQDESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPISVSIDASLASFQF 258
Query: 763 YKQGVYYEAKCDPTIQNHAVLVVGYGVENGHKYWLVKNSWGPSWG 897
Y +GVYY+ CD NHAVLVVGYG + G K+W++KNSWG SWG
Sbjct: 259 YSRGVYYDENCDRDNVNHAVLVVGYGTQKGSKHWIIKNSWGESWG 303
>sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor
Length = 326
Score = 266 bits (679), Expect = 8e-71
Identities = 122/277 (44%), Positives = 178/277 (64%), Gaps = 4/277 (1%)
Frame = +1
Query: 79 WQVFKTKFNKNYTAIDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFSDLTYKEF 258
W +K +NK Y D+ R+ IW +N+K+IQ HN+++DLG +++LG+N+F+D+T++EF
Sbjct: 21 WHQWKRMYNKEYNGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEF 80
Query: 259 EKLYLLSKNIEYNDGIDYLPPLNIDN--LPDSVDWRTKGYVTNVKNQGQCGSCWAFSTTG 432
+ YL + +D + + P +N +PD +DWR GYVT VK+QG CGSCWAFSTTG
Sbjct: 81 KAKYLTEMS-RASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSCWAFSTTG 139
Query: 433 SLEGQHFRKHKVLQNISEQQLVDCVTK--NSGCNGGWMNIAFEYISSHGIESEDNYPYQA 606
++EGQ+ + + + SEQQLVDC N+GC+GG M A++Y+ G+E+E +YPY A
Sbjct: 140 TMEGQYMKNERTSISFSEQQLVDCSGPWGNNGCSGGLMENAYQYLKQFGLETESSYPYTA 199
Query: 607 KQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGYSFQQYKQGVYYE 786
+G C ++K VA G+ ++S +E +L V P +VA+DV F Y+ G+Y
Sbjct: 200 VEGQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGARRPAAVAVDVESDFMMYRSGIYQS 259
Query: 787 AKCDPTIQNHAVLVVGYGVENGHKYWLVKNSWGPSWG 897
C P NHAVL VGYG + G YW+VKNSWG WG
Sbjct: 260 QTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGTYWG 296
>sp|O35186|CATK_RAT Cathepsin K precursor
Length = 329
Score = 265 bits (678), Expect = 1e-70
Identities = 131/285 (45%), Positives = 186/285 (65%), Gaps = 6/285 (2%)
Frame = +1
Query: 61 EEFNAEWQVFKTKFNKNYTA-IDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFS 237
E + +W+++K K Y + +DE+ R+ IW +N+K I HN++ LG H++ L +N
Sbjct: 20 ETLDTQWELWKKTHGKQYNSKVDEISRRLIWEKNLKKISVHNLEASLGAHTYELAMNHLG 79
Query: 238 DLTYKEFEKLYL---LSKNIEYNDGIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCGS 408
D+T +E + + + +++ Y P +PDS+D+R KGYVT VKNQGQCGS
Sbjct: 80 DMTSEEVVQKMTGLRVPPSRSFSNDTLYTPEWE-GRVPDSIDYRKKGYVTPVKNQGQCGS 138
Query: 409 CWAFSTTGSLEGQHFRKHKVLQNISEQQLVDCVTKNSGCNGGWMNIAFEYISSH-GIESE 585
CWAFS+ G+LEGQ +K L +S Q LVDCV++N GC GG+M AF+Y+ + GI+SE
Sbjct: 139 CWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVSENYGCGGGYMTTAFQYVQQNGGIDSE 198
Query: 586 DNYPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQQ 762
D YPY + +C+++ + A C+G++ I NEK L AVA VGP+SV+ID SFQ
Sbjct: 199 DAYPYVGQDESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPVSVSIDASLTSFQF 258
Query: 763 YKQGVYYEAKCDPTIQNHAVLVVGYGVENGHKYWLVKNSWGPSWG 897
Y +GVYY+ CD NHAVLVVGYG + G+KYW++KNSWG SWG
Sbjct: 259 YSRGVYYDENCDRDNVNHAVLVVGYGTQKGNKYWIIKNSWGESWG 303
>sp|P25782|CYSP2_HOMAM Digestive cysteine proteinase 2 precursor
Length = 323
Score = 265 bits (678), Expect = 1e-70
Identities = 139/280 (49%), Positives = 178/280 (63%), Gaps = 7/280 (2%)
Frame = +1
Query: 79 WQVFKTKFNKNYT-AIDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFSDLTYKE 255
W+ FK K+ + Y A ++ R+ I+ +N KYI+ N KY+ G + +L +N+F D+T +E
Sbjct: 20 WEHFKGKYGRQYVDAEEDSYRRVIFEQNQKYIEEFNKKYENGEVTFNLAMNKFGDMTLEE 79
Query: 256 FEKLYLLSKNIEYNDG--IDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCGSCWAFSTT 429
F + + NI + P VDWRTKG VT VK+QGQCGSCWAFSTT
Sbjct: 80 FNAV--MKGNIPRRSAPVSVFYPKKETGPQATEVDWRTKGAVTPVKDQGQCGSCWAFSTT 137
Query: 430 GSLEGQHFRKHKVLQNISEQQLVDCVTK--NSGCNGGWMNIAFEYI-SSHGIESEDNYPY 600
GSLEGQHF K L +++EQQLVDC GCNGGWMN AF+YI +++GI++E YPY
Sbjct: 138 GSLEGQHFLKTGSLISLAEQQLVDCSRPYGPQGCNGGWMNDAFDYIKANNGIDTEAAYPY 197
Query: 601 QAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQQYKQGV 777
+A+ G+C FD + V A C G NI S +E L AV +GPISV ID + SFQ Y GV
Sbjct: 198 EARDGSCRFDSNSVAATCSGHTNIASGSETGLQQAVRDIGPISVTIDAAHSSFQFYSSGV 257
Query: 778 YYEAKCDPTIQNHAVLVVGYGVENGHKYWLVKNSWGPSWG 897
YYE C P+ +HAVL VGYG E G +WLVKNSW SWG
Sbjct: 258 YYEPSCSPSYLDHAVLAVGYGSEGGQDFWLVKNSWATSWG 297
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,718,233
Number of Sequences: 369166
Number of extensions: 2197235
Number of successful extensions: 6999
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6354
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9126484700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)