Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_B01
(432 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q62217|SEM5A_MOUSE Semaphorin-5A precursor (Semaphorin F... 30 1.7
sp|Q7ZZV4|TSHB_ANGJA Thyrotropin beta chain precursor (Thyr... 30 1.7
sp|Q08127|TSHB_ANGAN Thyrotropin beta chain precursor (Thyr... 30 2.8
sp|Q09272|YQG1_CAEEL Hypothetical protein C41C4.1 in chromo... 29 3.7
sp|Q01253|YSCL_YEREN Yop proteins translocation protein L 29 4.8
sp|Q13591|SEM5A_HUMAN Semaphorin-5A precursor (Semaphorin F... 29 4.8
sp|P38114|YB00_YEAST Putative 126.9 kDa transcriptional reg... 28 6.3
sp|P29993|ITPR_DROME Inositol 1,4,5-trisphosphate receptor ... 28 6.3
sp|Q22431|ARI2_CAEEL Probable ariadne-2 protein (Ari-2) 28 8.3
>sp|Q62217|SEM5A_MOUSE Semaphorin-5A precursor (Semaphorin F) (Sema F)
Length = 1077
Score = 30.4 bits (67), Expect = 1.7
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 18/124 (14%)
Frame = -1
Query: 387 RCRWCSQAYPDRFQCENCVQTNNNCCFDPRNINIVSPALSICRQQRSCTFINLSXXXXXX 208
R R C +P QC + C FD I VS A S +++ C N+
Sbjct: 916 RARQCILLFPVGSQCSGNTTESRPCVFDSNFIPEVSVARSSSVEEKRCGEFNMFHMFHMM 975
Query: 207 XQG-----FGCINCVLNFQNC-----------CVSPINP--LNNYIAQNFCNFIDDQQ*L 82
G GC+ +L + C + P++P LN+ I N N +D +
Sbjct: 976 AVGLSSSILGCLLTLLVYTYCQRYQQQSHDATVIHPVSPAALNSSIT-NHINKLDKYDSV 1034
Query: 81 DFLK 70
+ +K
Sbjct: 1035 EAIK 1038
>sp|Q7ZZV4|TSHB_ANGJA Thyrotropin beta chain precursor (Thyroid-stimulating hormone beta
subunit) (TSH-beta) (TSH-B)
Length = 147
Score = 30.4 bits (67), Expect = 1.7
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Frame = -1
Query: 363 YPDRFQCENCVQTNNNCCF------DPRNINIVSPALSICRQQRSCTF 238
Y ++ +C+ CV N C DP N+V PA+ QR CT+
Sbjct: 30 YVEKPECDFCVAINTTICMGFCYSLDP---NVVGPAVKRLAVQRGCTY 74
>sp|Q08127|TSHB_ANGAN Thyrotropin beta chain precursor (Thyroid-stimulating hormone beta
subunit) (TSH-beta) (TSH-B)
Length = 147
Score = 29.6 bits (65), Expect = 2.8
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Frame = -1
Query: 363 YPDRFQCENCVQTNNNCCF------DPRNINIVSPALSICRQQRSCTF 238
Y ++ +C+ CV N C DP N+V PA+ QR CT+
Sbjct: 30 YVEKPECDFCVAINTTICMGFCYSLDP---NVVGPAVKRLVVQRGCTY 74
>sp|Q09272|YQG1_CAEEL Hypothetical protein C41C4.1 in chromosome II
Length = 329
Score = 29.3 bits (64), Expect = 3.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 402 NYSMSRCRWCSQAYPDRFQCENCVQTNNNC 313
++ ++C + +Q YPDR QC NC Q N C
Sbjct: 165 SFFSNKCIFEAQKYPDRKQCYNC-QGNVTC 193
>sp|Q01253|YSCL_YEREN Yop proteins translocation protein L
Length = 223
Score = 28.9 bits (63), Expect = 4.8
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 314 AVLIHETLILCHQLCQYVDNK--EAVLLLTCHNVKDVDNRDL 195
A LIHET + C Q ++V+ + E VLL + D D D+
Sbjct: 85 ATLIHETQLQCQQFYRHVEQQMSEVVLLAVRKILNDYDQVDM 126
>sp|Q13591|SEM5A_HUMAN Semaphorin-5A precursor (Semaphorin F) (Sema F)
Length = 1074
Score = 28.9 bits (63), Expect = 4.8
Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 15/121 (12%)
Frame = -1
Query: 387 RCRWCSQAYPDRFQCENCVQTNNNCCFDPRNINIVSPALSICRQQRSCTFINLSXXXXXX 208
R R C +P QC + C FD I VS A S +++ C N+
Sbjct: 916 RARQCILLFPMGSQCSGNTTESRPCVFDSNFIPEVSVARSSSVEEKRCGEFNMFHMIAVG 975
Query: 207 XQG--FGCINCVLNFQNC-----------CVSPIN--PLNNYIAQNFCNFIDDQQ*LDFL 73
GC+ +L + C + P++ PLN I N N +D ++ +
Sbjct: 976 LSSSILGCLLTLLVYTYCQRYQQQSHDATVIHPVSPAPLNTSIT-NHINKLDKYDSVEAI 1034
Query: 72 K 70
K
Sbjct: 1035 K 1035
>sp|P38114|YB00_YEAST Putative 126.9 kDa transcriptional regulatory protein in YSW1-RIB7
intergenic region
Length = 1094
Score = 28.5 bits (62), Expect = 6.3
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -1
Query: 426 QNRFQQCPNYSMSRCRWCSQAYPDRFQCENCVQTNNNCCF 307
++R + +Y R C++ P +C NC++ N +C F
Sbjct: 100 KSRVTKACDYCRKRKIRCTEIEPISGKCRNCIKYNKDCTF 139
>sp|P29993|ITPR_DROME Inositol 1,4,5-trisphosphate receptor (InsP3 receptor) (InsP3R)
Length = 2838
Score = 28.5 bits (62), Expect = 6.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 399 YSMSRCRWCSQAYPDRFQCENCVQT 325
+ +++CRW S DRF ENC++T
Sbjct: 1620 HRITQCRWLSLG--DRFNVENCIRT 1642
>sp|Q22431|ARI2_CAEEL Probable ariadne-2 protein (Ari-2)
Length = 482
Score = 28.1 bits (61), Expect = 8.3
Identities = 16/55 (29%), Positives = 17/55 (30%)
Frame = -1
Query: 408 CPNYSMSRCRWCSQAYPDRFQCENCVQTNNNCCFDPRNINIVSPALSICRQQRSC 244
C S C C Y CE Q C D N +S C Q SC
Sbjct: 239 CMQCHTSFCVKCGADYHAPTSCETIKQWMTKCADDSETANYISAHTKDCPQCHSC 293
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,669,864
Number of Sequences: 369166
Number of extensions: 829236
Number of successful extensions: 1830
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1829
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)