Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_A20
(693 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P22114|TATR_NPVOP Trans-activating transcriptional regul... 34 0.42
sp|Q08235|BRX1_YEAST Ribosome biogenesis protein BRX1 32 2.1
sp|Q9BX84|TRPM6_HUMAN Transient receptor potential cation c... 31 2.7
sp|Q13439|GOGA4_HUMAN Golgin subfamily A member 4 (Trans-Go... 31 3.5
sp|Q19345|NHR25_CAEEL Nuclear hormone receptor family membe... 31 3.5
sp|Q8CD91|SMOC2_MOUSE SPARC related modular calcium-binding... 30 4.6
sp|Q9RWV7|SYW_DEIRA Tryptophanyl-tRNA synthetase (Tryptopha... 30 6.1
>sp|P22114|TATR_NPVOP Trans-activating transcriptional regulatory protein (Immediate
early protein 1) (IE-1)
Length = 560
Score = 33.9 bits (76), Expect = 0.42
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +2
Query: 209 KKSMNLNDPYE----RKIFSSVMEVLRKKNRNPNSIDTESIAVDPVLQLSEYKSKFRNPQ 376
K +M LN Y+ R +F+ + + RK+ N N+ ++ A V Q+ +Y R PQ
Sbjct: 327 KTNMLLNKLYQMYQDRSLFTLPIMLSRKEPVNENAPQNKNHAFSYVAQIMKYSKNLRFPQ 386
Query: 377 NKSVAFPTSKTENIVTVKQPL 439
+ E IVT K L
Sbjct: 387 GDPTQQVMDRLEEIVTQKSSL 407
>sp|Q08235|BRX1_YEAST Ribosome biogenesis protein BRX1
Length = 291
Score = 31.6 bits (70), Expect = 2.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 433 LFNCNNIFCFRCRKSY*FILWISK 362
L+NCNN+ F RK LW+SK
Sbjct: 80 LYNCNNVLFFEARKHQDLYLWLSK 103
>sp|Q9BX84|TRPM6_HUMAN Transient receptor potential cation channel subfamily M member 6
(Channel kinase 2) (Melastatin-related TRP cation channel
6)
Length = 2022
Score = 31.2 bits (69), Expect = 2.7
Identities = 24/87 (27%), Positives = 41/87 (47%)
Frame = +2
Query: 179 QQSYQISDYLKKSMNLNDPYERKIFSSVMEVLRKKNRNPNSIDTESIAVDPVLQLSEYKS 358
Q + QISDYLK+S D + +++S R N N NS+ SI VD + +
Sbjct: 1652 QCAIQISDYLKQSQ--EDLSKNSLWNS-----RSTNLNRNSLLKSSIGVDKI------SA 1698
Query: 359 KFRNPQNKSVAFPTSKTENIVTVKQPL 439
++PQ + + N++ + Q +
Sbjct: 1699 SLKSPQEPHHHYSAIERNNLMRLSQTI 1725
>sp|Q13439|GOGA4_HUMAN Golgin subfamily A member 4 (Trans-Golgi p230) (256 kDa golgin)
(Golgin-245) (Protein 72.1)
Length = 2230
Score = 30.8 bits (68), Expect = 3.5
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +2
Query: 164 IATNTQQSYQISDYLKKSMNLNDPYE-RKIFSSVMEVLRKKNRNPNSIDTESIAVDPVLQ 340
I+ QQ Q + S N + P R SS E L + N S DT+S A L+
Sbjct: 9 ISEEQQQLQQALAPAQASSNSSTPTRMRSRTSSFTEQLDEGTPNRESGDTQSFAQKLQLR 68
Query: 341 LSEYKSKFRNPQNKSVAFPTSKTENIV 421
+ +S FR+P +S+ F +S E++V
Sbjct: 69 VPSVESLFRSPIKESL-FRSSSKESLV 94
>sp|Q19345|NHR25_CAEEL Nuclear hormone receptor family member nhr-25
Length = 572
Score = 30.8 bits (68), Expect = 3.5
Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 12/146 (8%)
Frame = +2
Query: 98 HFAKPSHKTTSIAVGPDKHFD--TIATNTQQSYQISDYLKKSMNLNDPYE--RKIFSSVM 265
+F + KT I D H T++++T Q +SD++ + L DP + + S +
Sbjct: 158 YFDQTKIKTEYIKTEYDAHLQSPTLSSSTNQQLSVSDFIMRPGYLVDPQDSLAVLLGSTI 217
Query: 266 EVLRKKNRNPNSIDTESIAVDPVLQLSEYKSKFRNPQNKSVAFPTSKTENIVTV------ 427
+ ++ P + + +P +Y +F + TS T N T+
Sbjct: 218 DDPLLRHTFPAAYQLNEVKQEPF----DYSEQFIHHSLHDYPTYTSNTTNYATMMPMTTV 273
Query: 428 --KQPLVCLHKTRPLGQLRPQSSTVP 499
Q LV + G++ SST P
Sbjct: 274 SSTQSLVTSTSSTTTGRMTEASSTSP 299
>sp|Q8CD91|SMOC2_MOUSE SPARC related modular calcium-binding protein 2 precursor (Secreted
modular calcium-binding protein 2) (SMOC-2)
Length = 447
Score = 30.4 bits (67), Expect = 4.6
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
Frame = +2
Query: 167 ATNTQQSYQISDYLKKSMNLNDP-----YERKIFSSVMEVLRKKNRNPNSIDTESIAVDP 331
A +T + +SD S L++P E ++ ++L K + S D + P
Sbjct: 319 ALSTDMVHAVSDPSSSSGRLSEPDPSHTLEERVVHWYFKLLDKNS----SGDIGKKEIKP 374
Query: 332 VLQLSEYKSKFRNPQNKSVAFPTSKTENIVTVKQPLVCLHKTRPLGQLRPQSSTVPR 502
+ KSK + K V + + +TV++ + CL TR G+ + PR
Sbjct: 375 FKRFLRKKSKPKKCVKKFVEYCDMNNDKSITVQELMGCLGVTREEGKANTRKRHTPR 431
>sp|Q9RWV7|SYW_DEIRA Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS)
Length = 330
Score = 30.0 bits (66), Expect = 6.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 149 KHFDTIATNTQQSYQISDYLKKSMNLNDPYERKIFSSVMEVLRKK 283
+H D I T Q DY++ ++ D R I S VM+ +R+K
Sbjct: 280 EHLDPIQTRAAQLRADPDYVRDALRQGDQEARAIASEVMDEVRQK 324
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,329,329
Number of Sequences: 369166
Number of extensions: 1336657
Number of successful extensions: 3408
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3407
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)