Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_A09
(878 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9M4W3|ISPF_CATRO 2-C-methyl-D-erythritol 2,4-cyclodipho... 32 3.0
sp|Q6XW15|POLG_BTMV Genome polyprotein [Contains: P1 protei... 31 4.0
sp|Q92E86|HIS5_LISIN Imidazole glycerol phosphate synthase ... 31 4.0
sp|Q8ZE65|ASR1_YERPE Acid shock protein 1 precursor 31 4.0
sp|P26818|ARBK2_BOVIN Beta-adrenergic receptor kinase 2 (Be... 31 5.2
sp|P35626|ARBK2_HUMAN Beta-adrenergic receptor kinase 2 (Be... 31 5.2
sp|P50562|RL18_HALSA 50S ribosomal protein L18P (HCuL18) (H... 31 5.2
sp|Q51344|DHAS_PSEAE Aspartate-semialdehyde dehydrogenase (... 30 6.8
sp|P13730|SGS3_DROER Salivary glue protein Sgs-3 precursor 30 6.8
sp|P97515|FETUA_MERUN Alpha-2-HS-glycoprotein precursor (Fe... 30 6.8
>sp|Q9M4W3|ISPF_CATRO 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast
precursor (MECPS) (MECDP-synthase)
Length = 236
Score = 31.6 bits (70), Expect = 3.0
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = -1
Query: 440 ASFFGCHSSSTARKSNASRNTFACSPANFSQQSIKPTSKAASKLAPTLLPTARACNRTLP 261
A+ F C ++ ++K+N +R F CSP SK P+ + + +RTL
Sbjct: 4 ATSFYCSTAIPSKKTNQNRENFLCSPV------------GGSKTTPSYIRLSTRQSRTLS 51
Query: 260 IIEHKPRKGTARDSTNK 210
++ G A ++ K
Sbjct: 52 LVVSAAASGAAVEAEPK 68
>sp|Q6XW15|POLG_BTMV Genome polyprotein [Contains: P1 proteinase (N-terminal protein);
Helper component proteinase (HC-pro); Protein P3; 6 kDa
protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6
kDa protein 2 (6K2); Viral genome-linked protein (VPg);
Nuclear inclusion protein A (NI-a) (NIa) (NIa-pro) (49
kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B
(NI-b) (NIb) (RNA-directed RNA polymerase); Coat protein
(CP)]
Length = 3085
Score = 31.2 bits (69), Expect = 4.0
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -1
Query: 332 TSKAASKLAPTLLPTARACNRTLPIIEHKPRKGTARDSTNKILN---CSANFRIS 177
TS ASK++ TL A RTL IIEH R+ + + + LN C+ +F ++
Sbjct: 1692 TSACASKISYTLTTQPNAIPRTLAIIEHLLREEQQKKAYFESLNDTLCATSFSLA 1746
>sp|Q92E86|HIS5_LISIN Imidazole glycerol phosphate synthase subunit hisH (IGP synthase
glutamine amidotransferase subunit) (IGP synthase
subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit
hisH)
Length = 208
Score = 31.2 bits (69), Expect = 4.0
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 355 KLAGEHAKVLR-DALDLRAVDELWQPKKLAGQKDKDIFIREMHEAGLDMQGFC 510
K++ HA++L+ D + L V + + G++ D+ ++EM E+G M G C
Sbjct: 27 KISSNHAEILQADGVILPGVGAFPEAMQELGRRGLDVTLKEMAESGKPMLGVC 79
>sp|Q8ZE65|ASR1_YERPE Acid shock protein 1 precursor
Length = 94
Score = 31.2 bits (69), Expect = 4.0
Identities = 27/92 (29%), Positives = 37/92 (40%)
Frame = -1
Query: 557 LARLHVLFVKVTVNPLQNPCMSKPASCISLINISLSFCPASFFGCHSSSTARKSNASRNT 378
L+ V F TV P P + PA + AS H A+K N +NT
Sbjct: 13 LSLFSVAFAADTVVPQTTPTATAPAPAVH---------NASAKTMHHKK-AQKPNTIKNT 62
Query: 377 FACSPANFSQQSIKPTSKAASKLAPTLLPTAR 282
+P +Q + K A S APT+ P A+
Sbjct: 63 HKTAPEQKAQAAQKHHKAAHSHKAPTVAPAAK 94
>sp|P26818|ARBK2_BOVIN Beta-adrenergic receptor kinase 2 (Beta-ARK-2) (G-protein coupled
receptor kinase 3)
Length = 688
Score = 30.8 bits (68), Expect = 5.2
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 763 EFCLSKLDEFLPGCKFYQITTDYEK 837
+FCL++++E +P KFY+ +YEK
Sbjct: 70 DFCLNEINEAVPQVKFYEEIKEYEK 94
>sp|P35626|ARBK2_HUMAN Beta-adrenergic receptor kinase 2 (Beta-ARK-2) (G-protein coupled
receptor kinase 3)
Length = 688
Score = 30.8 bits (68), Expect = 5.2
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 763 EFCLSKLDEFLPGCKFYQITTDYEK 837
+FCL++++E +P KFY+ +YEK
Sbjct: 70 DFCLNEINEAVPQVKFYEEIKEYEK 94
>sp|P50562|RL18_HALSA 50S ribosomal protein L18P (HCuL18) (HSal18) (HHal18) (HL13)
Length = 183
Score = 30.8 bits (68), Expect = 5.2
Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 11/132 (8%)
Frame = +1
Query: 37 QVAREGSQALYASRLSLAFHRGIVETCYEFQETVGKFHSK---LFCWCNTEMRKFAEQLR 207
++ + G L A + + +V T + ETV HS + W A L
Sbjct: 26 RLLKSGKPRLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLT 85
Query: 208 ILLVESRAVPFLGLCSIMGRVRLHARAVGNKVGANLEAAFEVGL--------MDCWEKLA 363
LL RAV G+ + + L+ G+KV A E A + GL + W +
Sbjct: 86 GLLAGQRAVD-AGVEEAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSRTR 144
Query: 364 GEHAKVLRDALD 399
GEH ++LD
Sbjct: 145 GEHIAEYAESLD 156
>sp|Q51344|DHAS_PSEAE Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH)
Length = 370
Score = 30.4 bits (67), Expect = 6.8
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +1
Query: 178 EMRKFAEQLRILLVESRAVPFLGLCSIMGRVRLHARAVGNKVGANLEAAFEVGLM---DC 348
E + AE +IL +P G+C +G +R H++A+ K+ ++ GL+ +
Sbjct: 242 EWKAQAETNKILARFKNPIPVDGICVRVGAMRCHSQALTIKLNKDVPLTDIEGLISQHNP 301
Query: 349 WEKLAGEHAKV 381
W KL H +V
Sbjct: 302 WVKLVPNHREV 312
>sp|P13730|SGS3_DROER Salivary glue protein Sgs-3 precursor
Length = 328
Score = 30.4 bits (67), Expect = 6.8
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Frame = -1
Query: 413 STARKSNASRNTFACSPANFSQQSIKPTSKAASKLAPT------LLPTARACNRTLPIIE 252
+T +++ R T +P + PT +A +K APT PT RA + P
Sbjct: 206 ATTKRAPTKRVTTKRAPTKRATTKRAPTKRATTKRAPTKRATTKRAPTKRATTKRAPTKR 265
Query: 251 HKPRKGTARDSTNKILNC 198
++ TAR T+K C
Sbjct: 266 ATTKRATAR-PTSKPCGC 282
>sp|P97515|FETUA_MERUN Alpha-2-HS-glycoprotein precursor (Fetuin-A) (Countertrypin)
Length = 348
Score = 30.4 bits (67), Expect = 6.8
Identities = 30/109 (27%), Positives = 40/109 (36%), Gaps = 6/109 (5%)
Frame = -1
Query: 545 HVLFVKVTVNPLQNPCMSKPASCISLINISLSFCPASFFGCHSSSTARKSNASRNTFACS 366
HV FV + P ++ PA C L SFC AS F + T C+
Sbjct: 198 HVEFV-IAATDCAAPKVADPAKCNLLAEKQYSFCKASLF--------QNLGGEEVTVTCT 248
Query: 365 PANFSQQSIKPTS--KAASKLAPTLLPTARACNRTL-PII---EHKPRK 237
+ P S A K P LP A + + P++ EH P K
Sbjct: 249 AFPTQANGVTPASPAPAVEKGIPVALPDAPPASLVVGPMVVPAEHLPHK 297
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,108,373
Number of Sequences: 369166
Number of extensions: 1678353
Number of successful extensions: 4379
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4333
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)