Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_A07
(883 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48918|NU5M_ALBCO NADH-ubiquinone oxidoreductase chain 5... 112 1e-24
sp|Q00232|NU5M_MYTED NADH-ubiquinone oxidoreductase chain 5... 108 3e-23
sp|P34855|NU5M_APILI NADH-ubiquinone oxidoreductase chain 5... 107 4e-23
sp|Q9ZYM7|NU5M_RHISA NADH-ubiquinone oxidoreductase chain 5... 103 5e-22
sp|Q34947|NU5M_LUMTE NADH-ubiquinone oxidoreductase chain 5... 103 6e-22
sp|Q36428|NU5M_LOCMI NADH-ubiquinone oxidoreductase chain 5... 103 8e-22
sp|Q56227|NQO12_THET8 NADH-quinone oxidoreductase chain 12 ... 101 2e-21
sp|Q5DUY0|NU5H_NYCOV NADH-ubiquinone oxidoreductase chain 5... 101 3e-21
sp|O79678|NU5M_PELSU NADH-ubiquinone oxidoreductase chain 5... 100 4e-21
sp|P03921|NU5M_MOUSE NADH-ubiquinone oxidoreductase chain 5... 100 7e-21
>sp|P48918|NU5M_ALBCO NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 545
Score = 112 bits (280), Expect = 1e-24
Identities = 65/172 (37%), Positives = 88/172 (51%), Gaps = 2/172 (1%)
Frame = +2
Query: 2 WLPEAMAAPTPVSALVHSSTLVVSGLYVLFRYF--DFLTVNILFFFTCIGLFTLYYGSFQ 175
WLP AMAAPTPVSALVHSSTLV +G+Y++ R F D + +G T G
Sbjct: 188 WLPAAMAAPTPVSALVHSSTLVTAGIYLMIRCFMVDGAPAEMYSLMGLVGSITCLLGGSV 247
Query: 176 ALLAYDSKKLVAYSTLSQXXXXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVGSYMVVGS 355
AL YD KK++A STLSQ HA+FKA LF+ G +++
Sbjct: 248 ALFEYDLKKVIALSTLSQLGVMMYSLSLNLPYLALLHLYGHAMFKAMLFLGAGLILMMSY 307
Query: 356 HHQDMRYLSSVWFMNPXXXXXXXXXXXXXRGLPFFSCFFFKELVLSKIVNLN 511
QD+R L S+ + +P G PF S F+ K L+L K++++N
Sbjct: 308 GTQDLRLLGSLLYSSPIVISLLNISMLCLMGFPFVSSFYSKHLILEKMLDMN 359
>sp|Q00232|NU5M_MYTED NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 568
Score = 108 bits (269), Expect = 3e-23
Identities = 65/165 (39%), Positives = 85/165 (51%), Gaps = 2/165 (1%)
Frame = +2
Query: 2 WLPEAMAAPTPVSALVHSSTLVVSGLYVLFRYFDFLTVN--ILFFFTCIGLFTLYYGSFQ 175
WLP AMAAPTPVS+LVHSSTLV +G+Y++ R F ++ N + + LFTL
Sbjct: 196 WLPAAMAAPTPVSSLVHSSTLVTAGVYLVLRSFYIISSNPYVTQVLMILSLFTLVLAGSS 255
Query: 176 ALLAYDSKKLVAYSTLSQXXXXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVGSYMVVGS 355
A+ A+D KK++A STLSQ HAVFKA LF+ G +
Sbjct: 256 AVFAFDLKKVIALSTLSQLSLMMFSISILLPSVAFFHLVTHAVFKALLFLGAGGVIHSNQ 315
Query: 356 HHQDMRYLSSVWFMNPXXXXXXXXXXXXXRGLPFFSCFFFKELVL 490
QD+R LSS+W P G PF S FF K+L++
Sbjct: 316 SIQDIRGLSSLWQGLPVSMGAMSVAIVSLSGAPFMSGFFSKDLMI 360
>sp|P34855|NU5M_APILI NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 554
Score = 107 bits (267), Expect = 4e-23
Identities = 63/182 (34%), Positives = 88/182 (48%), Gaps = 10/182 (5%)
Frame = +2
Query: 2 WLPEAMAAPTPVSALVHSSTLVVSGLYVLFRYFDFLTVNILFFFTCIGLFTLYYGSFQAL 181
WLP AM APTPVS+LVHSSTLV +G+Y+L RY + L N + I T+ + A
Sbjct: 196 WLPMAMMAPTPVSSLVHSSTLVTAGIYLLIRYVNLLDFNYKNYIMLIASLTMLFAGLVAN 255
Query: 182 LAYDSKKLVAYSTLSQXXXXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVGSYMVVGSHH 361
D KK+VAYSTLSQ +HA+FK+ +F+ VGSYM +
Sbjct: 256 FELDLKKVVAYSTLSQLGFMMSMLSIGSTELVFLHLFIHAMFKSLMFMCVGSYMHYMYSN 315
Query: 362 QDMRYLSSVWFMNPXXXXXXXXXXXXXRGLPF----------FSCFFFKELVLSKIVNLN 511
QD+R ++++ P G PF FFF +++ ++NL
Sbjct: 316 QDIRMYYGMYYIYPMKSMILIFSILSLCGFPFLVGYYSKDLIIEMFFFSKMIYFSMINLI 375
Query: 512 FG 517
G
Sbjct: 376 IG 377
>sp|Q9ZYM7|NU5M_RHISA NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 552
Score = 103 bits (258), Expect = 5e-22
Identities = 63/165 (38%), Positives = 85/165 (51%), Gaps = 2/165 (1%)
Frame = +2
Query: 2 WLPEAMAAPTPVSALVHSSTLVVSGLYVLFRYFDFLTVNILF--FFTCIGLFTLYYGSFQ 175
WLP AMAAPTPVSALVHSSTLV +G+Y+L R FD L N +F F I L T+
Sbjct: 194 WLPAAMAAPTPVSALVHSSTLVTAGVYLLIR-FDLLFNNNIFSAFLMKISLMTMIMSGMN 252
Query: 176 ALLAYDSKKLVAYSTLSQXXXXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVGSYMVVGS 355
A D KK++A+STLSQ VHA+FK+ LF+ G +
Sbjct: 253 AFFENDLKKIIAFSTLSQLSIMMLTLSLSLTNLSFFHLIVHAIFKSMLFLCAGFVIHNLM 312
Query: 356 HHQDMRYLSSVWFMNPXXXXXXXXXXXXXRGLPFFSCFFFKELVL 490
+QD+R+LS + +P G PF F+ K++++
Sbjct: 313 GNQDIRFLSDFFKFSPLILSCMMIGMFSLMGFPFIGGFYSKDVIM 357
>sp|Q34947|NU5M_LUMTE NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 574
Score = 103 bits (257), Expect = 6e-22
Identities = 62/167 (37%), Positives = 88/167 (52%), Gaps = 4/167 (2%)
Frame = +2
Query: 2 WLPEAMAAPTPVSALVHSSTLVVSGLYVLFRYFDFLTVNILFFFTCIGLF----TLYYGS 169
WLP AMAAPTPVSALVHSSTLV +G+++L R+++FL + +++FT LF T
Sbjct: 202 WLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFYNFL--SSVWWFTTFLLFVAVSTTLMAG 259
Query: 170 FQALLAYDSKKLVAYSTLSQXXXXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVGSYMVV 349
A D KK++A STLSQ HA+FKA LFV GS++
Sbjct: 260 LSASSECDMKKIIALSTLSQLGMMMAAMGLGMAHMAFFHMVTHAMFKALLFVCAGSFIHS 319
Query: 350 GSHHQDMRYLSSVWFMNPXXXXXXXXXXXXXRGLPFFSCFFFKELVL 490
H QD+R++ ++ P G PF S F+ K++++
Sbjct: 320 HMHSQDLRWMGNLTKQMPTTTSCLIMANLALCGFPFMSGFYSKDMIV 366
>sp|Q36428|NU5M_LOCMI NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 572
Score = 103 bits (256), Expect = 8e-22
Identities = 61/164 (37%), Positives = 85/164 (51%), Gaps = 1/164 (0%)
Frame = +2
Query: 2 WLPEAMAAPTPVSALVHSSTLVVSGLYVLFRYFDFLTV-NILFFFTCIGLFTLYYGSFQA 178
WLP AMAAPTPVSALVHSSTLV +G+Y+L R+ L V + ++ IG T++ A
Sbjct: 200 WLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNPMLMVYDFGWYILFIGCLTMFMSGLGA 259
Query: 179 LLAYDSKKLVAYSTLSQXXXXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVGSYMVVGSH 358
+D KK++A STLSQ HA+FKA LF+ GS +
Sbjct: 260 NFEFDLKKIIALSTLSQLGLMMSILSMGYSDLAFFHLLTHALFKALLFMCAGSMIHNLRD 319
Query: 359 HQDMRYLSSVWFMNPXXXXXXXXXXXXXRGLPFFSCFFFKELVL 490
QD+R++ S+ P G+PF + F+ K+L+L
Sbjct: 320 SQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLIL 363
>sp|Q56227|NQO12_THET8 NADH-quinone oxidoreductase chain 12 (NADH dehydrogenase I, chain
12) (NDH-1, chain 12)
Length = 606
Score = 101 bits (252), Expect = 2e-21
Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 2/174 (1%)
Frame = +2
Query: 2 WLPEAMAAPTPVSALVHSSTLVVSGLYVLFRYFDFLTV--NILFFFTCIGLFTLYYGSFQ 175
WLP+AMA PTPVSAL+H++T+V +G+Y++ R +V ++ + +GL T YG+
Sbjct: 225 WLPDAMAGPTPVSALIHAATMVTAGVYLIARSSFLYSVLPDVSYAIAVVGLLTAAYGALS 284
Query: 176 ALLAYDSKKLVAYSTLSQXXXXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVGSYMVVGS 355
A D KK+VAYST+SQ HA FKA LF++ GS +
Sbjct: 285 AFGQTDIKKIVAYSTISQLGYMFLAAGVGAYWVALFHVFTHAFFKALLFLASGSVIHALG 344
Query: 356 HHQDMRYLSSVWFMNPXXXXXXXXXXXXXRGLPFFSCFFFKELVLSKIVNLNFG 517
QD+R + +W P GLP S F+ K+ +L+ + FG
Sbjct: 345 GEQDVRKMGGLWKHLPQTRWHALIGALALGGLPLLSGFWSKDAILAATLTYPFG 398
>sp|Q5DUY0|NU5H_NYCOV NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit 5)
Length = 1849
Score = 101 bits (251), Expect = 3e-21
Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 2/170 (1%)
Frame = +2
Query: 2 WLPEAMAAPTPVSALVHSSTLVVSGLYVLFRYFDFLTVNI--LFFFTCIGLFTLYYGSFQ 175
WLP+AM APTP SAL+HSSTLVV G++++ R+ L +++ L+ + +G T+ YG+
Sbjct: 1465 WLPDAMEAPTPASALIHSSTLVVMGIFMILRFAPILHLSVYTLYIMSILGSLTVAYGAIL 1524
Query: 176 ALLAYDSKKLVAYSTLSQXXXXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVGSYMVVGS 355
A D KK VAYST+SQ +HA+ KA LFV VG + +
Sbjct: 1525 ATQTSDLKKAVAYSTISQIGYLFTGCAFLAFRATLIYLILHAICKALLFVLVGYIVHMFG 1584
Query: 356 HHQDMRYLSSVWFMNPXXXXXXXXXXXXXRGLPFFSCFFFKELVLSKIVN 505
+R + ++++ P G P+ FF KEL+++ + N
Sbjct: 1585 GTTSLRRMGGIYYIVPDIAIYMFILCMVLAGAPYTVGFFAKELIVTTLTN 1634
>sp|O79678|NU5M_PELSU NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 605
Score = 100 bits (250), Expect = 4e-21
Identities = 61/169 (36%), Positives = 84/169 (49%), Gaps = 2/169 (1%)
Frame = +2
Query: 2 WLPEAMAAPTPVSALVHSSTLVVSGLYVLFRYFDFLTVNILFFFTCI--GLFTLYYGSFQ 175
WLP AM PTPVSAL+HSST+V +G+Y+L L+ F C+ G T Y SF+
Sbjct: 233 WLPAAMEGPTPVSALLHSSTMVTAGVYLLIGMHPILSQTQGFSEACLTMGAATALYASFK 292
Query: 176 ALLAYDSKKLVAYSTLSQXXXXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVGSYMVVGS 355
ALL D KK++A+STLSQ +HA FKA +F+ GS
Sbjct: 293 ALLQNDLKKIIAFSTLSQLGFMMATVGLNHPNLAFMHLCMHAFFKAMMFLCAGSISHALF 352
Query: 356 HHQDMRYLSSVWFMNPXXXXXXXXXXXXXRGLPFFSCFFFKELVLSKIV 502
QD+R +S + + P G PF + FF K+L++ I+
Sbjct: 353 GEQDIRKMSGMIKVTPITASCFTLSTLALAGFPFLTGFFSKDLIIETIL 401
>sp|P03921|NU5M_MOUSE NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 607
Score = 100 bits (248), Expect = 7e-21
Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 2/172 (1%)
Frame = +2
Query: 2 WLPEAMAAPTPVSALVHSSTLVVSGLYVLFRYFDFLTVN--ILFFFTCIGLFTLYYGSFQ 175
WLP AM PTPVSAL+HSST+VV+G+++L R+ T N IL C+G T + +
Sbjct: 232 WLPSAMEGPTPVSALLHSSTMVVAGIFLLVRFHPLTTNNNFILTTMLCLGALTTLFTAIC 291
Query: 176 ALLAYDSKKLVAYSTLSQXXXXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVGSYMVVGS 355
AL D KK++A+ST SQ HA FKA LF+ GS + +
Sbjct: 292 ALTQNDIKKIIAFSTSSQLGLMMVTLGMNQPHLAFLHICTHAFFKAMLFMCSGSIIHSLA 351
Query: 356 HHQDMRYLSSVWFMNPXXXXXXXXXXXXXRGLPFFSCFFFKELVLSKIVNLN 511
QD+R + ++ + P G+PF + F+ K+L++ I N
Sbjct: 352 DEQDIRKMGNITKIMPFTSSCLVIGSLALTGMPFLTGFYSKDLIIEAINTCN 403
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,341,005
Number of Sequences: 369166
Number of extensions: 698560
Number of successful extensions: 2260
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1999
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)