Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_P22
(605 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenas... 238 9e-63
sp|P20287|G3P_SCHMA Glyceraldehyde-3-phosphate dehydrogenas... 237 2e-62
sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenas... 234 2e-61
sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenas... 233 3e-61
sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenas... 233 4e-61
sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenas... 232 6e-61
sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenas... 231 1e-60
sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase ... 231 1e-60
sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenas... 229 3e-60
sp|P16858|G3P_MOUSE Glyceraldehyde-3-phosphate dehydrogenas... 229 3e-60
>sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 238 bits (607), Expect = 9e-63
Identities = 117/164 (71%), Positives = 134/164 (81%)
Frame = +2
Query: 5 EGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGM 184
EGLMTT+HA+TATQKTVDGPS KLWRDGRGA QNIIP IPELNGKITGM
Sbjct: 170 EGLMTTVHAFTATQKTVDGPSGKLWRDGRGAGQNIIPASTGAAKAVGKVIPELNGKITGM 229
Query: 185 AFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHN 364
AFRVP P+VSVVDLTC+L+K AKYD+IKAAIK ASE MKGIL YT+++VVS DF GD +
Sbjct: 230 AFRVPTPNVSVVDLTCRLQKPAKYDDIKAAIKTASEGPMKGILGYTQDQVVSTDFNGDTH 289
Query: 365 SSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 496
SSIFDA AGI L + FVKLV+WYDNE GYS RV+DL+ HM++K+
Sbjct: 290 SSIFDADAGIALNENFVKLVSWYDNECGYSNRVVDLVCHMASKE 333
>sp|P20287|G3P_SCHMA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Major larval
surface antigen) (P-37)
Length = 338
Score = 237 bits (604), Expect = 2e-62
Identities = 115/165 (69%), Positives = 130/165 (78%)
Frame = +2
Query: 5 EGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGM 184
EGLMTT+H++TATQK VDGPSSKLWRDGRGA QNIIP IP LNGK+TGM
Sbjct: 173 EGLMTTVHSFTATQKVVDGPSSKLWRDGRGAMQNIIPASTGAAKAVGKVIPALNGKLTGM 232
Query: 185 AFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHN 364
AFRVP PDVSVVDLTC+L K A Y+EIKAA+K A+ +KGIL YTE+EVVS DF G +
Sbjct: 233 AFRVPTPDVSVVDLTCRLGKGASYEEIKAAVKAAASGPLKGILEYTEDEVVSSDFVGSTS 292
Query: 365 SSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKDH 499
SSIFDAKAGI L + FVKLV+WYDNE+GYSCRV+DLI HM DH
Sbjct: 293 SSIFDAKAGISLNNNFVKLVSWYDNEFGYSCRVVDLITHMHKVDH 337
>sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 234 bits (596), Expect = 2e-61
Identities = 114/164 (69%), Positives = 133/164 (81%)
Frame = +2
Query: 5 EGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGM 184
EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGM
Sbjct: 170 EGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGM 229
Query: 185 AFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHN 364
AFRVP P+VSVVDLTC+L+K AKYD+IK +K A++ +KGILAYTE++VVS DF GD +
Sbjct: 230 AFRVPTPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILAYTEDQVVSCDFNGDSH 289
Query: 365 SSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 496
SS FDA AGI L D FVKLV+WYDNEYGYS RV+DL+ HM++K+
Sbjct: 290 SSTFDAGAGIALNDHFVKLVSWYDNEYGYSNRVVDLMVHMASKE 333
>sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 233 bits (594), Expect = 3e-61
Identities = 113/164 (68%), Positives = 132/164 (80%)
Frame = +2
Query: 5 EGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGM 184
EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGM
Sbjct: 170 EGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGM 229
Query: 185 AFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHN 364
AFRVP P+VSVVDLTC+L+KAAKYD+IK +K ASE +KGIL YTE++VVS DF D +
Sbjct: 230 AFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTH 289
Query: 365 SSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 496
SS FDA AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 290 SSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 333
>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 233 bits (593), Expect = 4e-61
Identities = 113/164 (68%), Positives = 132/164 (80%)
Frame = +2
Query: 5 EGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGM 184
EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGM
Sbjct: 170 EGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGM 229
Query: 185 AFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHN 364
AFRVP P+VSVVDLTC+L+K AKYD+IK +K A+E +KGIL YTE++VVS DF GD +
Sbjct: 230 AFRVPTPNVSVVDLTCRLEKPAKYDDIKRVVKAAAEGPLKGILGYTEDQVVSCDFNGDSH 289
Query: 365 SSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 496
SS FDA AGI L D FVKLV+WYDNE+GYS RV+DL+ HM++K+
Sbjct: 290 SSTFDAGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333
>sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 322
Score = 232 bits (591), Expect = 6e-61
Identities = 113/164 (68%), Positives = 131/164 (79%)
Frame = +2
Query: 5 EGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGM 184
EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGM
Sbjct: 159 EGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGM 218
Query: 185 AFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHN 364
AFRVP P+VSVVDLTC+L+K AKYDEIK +K ASE +KGIL YTE++VVS DF D +
Sbjct: 219 AFRVPTPNVSVVDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTH 278
Query: 365 SSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 496
SS FDA AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 279 SSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 322
>sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 231 bits (588), Expect = 1e-60
Identities = 112/164 (68%), Positives = 132/164 (80%)
Frame = +2
Query: 5 EGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGM 184
EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGM
Sbjct: 170 EGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGM 229
Query: 185 AFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHN 364
AFRVP P+VSVVDLTC+L+K AKYD+IK +K A++ +KGIL YTE++VVS DF GD +
Sbjct: 230 AFRVPTPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSH 289
Query: 365 SSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 496
SS FDA AGI L D FVKLV+WYDNE+GYS RV+DL+ HM++K+
Sbjct: 290 SSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 231 bits (588), Expect = 1e-60
Identities = 112/164 (68%), Positives = 131/164 (79%)
Frame = +2
Query: 5 EGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGM 184
EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGM
Sbjct: 170 EGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGM 229
Query: 185 AFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHN 364
AFRVP P+VSVVDLTC+L+K AKYD+IK +K ASE +KGIL YTE++VVS DF D +
Sbjct: 230 AFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTH 289
Query: 365 SSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 496
SS FDA AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 290 SSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 229 bits (585), Expect = 3e-60
Identities = 112/164 (68%), Positives = 131/164 (79%)
Frame = +2
Query: 5 EGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGM 184
EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGM
Sbjct: 170 EGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGM 229
Query: 185 AFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHN 364
AFRVP P+VSVVDLTC+L+KAAKYD+IK +K ASE +KGIL YTE++VVS DF +
Sbjct: 230 AFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSATH 289
Query: 365 SSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 496
SS FDA AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 290 SSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P16858|G3P_MOUSE Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 229 bits (585), Expect = 3e-60
Identities = 111/164 (67%), Positives = 131/164 (79%)
Frame = +2
Query: 5 EGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGM 184
EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGM
Sbjct: 170 EGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGM 229
Query: 185 AFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHN 364
AFRVP P+VSVVDLTC+L+K AKYD+IK +K ASE +KGIL YTE++VVS DF + +
Sbjct: 230 AFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSH 289
Query: 365 SSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 496
SS FDA AGI L D FVKL++WYDNEYGYS RV+DL+ +M++K+
Sbjct: 290 SSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,613,228
Number of Sequences: 369166
Number of extensions: 1207109
Number of successful extensions: 3308
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3179
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4699949280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)