Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_P18
(367 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8K9H1|IF2_BUCAP Translation initiation factor IF-2 31 0.78
sp|Q89AT6|NUOL_BUCBP NADH-quinone oxidoreductase chain L (N... 30 2.3
sp|O51083|SECG_BORBU Probable protein-export membrane prote... 29 3.0
sp|Q03721|KCNC4_HUMAN Potassium voltage-gated channel subfa... 28 5.1
sp|Q5BQN8|CENPJ_PANTR Centromere protein J 28 5.1
sp|P33539|RPOP_AGABT Probable DNA-directed RNA polymerase 28 5.1
sp|P34127|MYBH_DICDI Myb-like protein 28 6.6
sp|Q99JD4|CLAP2_RAT CLIP-associating protein 2 (Cytoplasmic... 28 6.6
sp|Q9TU23|CE290_BOVIN Centrosomal protein Cep290 28 6.6
sp|O75122|CLAP2_HUMAN CLIP-associating protein 2 (Cytoplasm... 28 6.6
>sp|Q8K9H1|IF2_BUCAP Translation initiation factor IF-2
Length = 867
Score = 31.2 bits (69), Expect = 0.78
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 146 DNELLNDIRLHNKNKSCDLTIENSNYSSQENGIEEIKINGHKKTK 280
D + ++ + KNKS ++ + N N SS EN + IK N + K
Sbjct: 624 DEKKAKEVASYRKNKSREIKLANQNRSSLENMFKNIKKNDFSELK 668
>sp|Q89AT6|NUOL_BUCBP NADH-quinone oxidoreductase chain L (NADH dehydrogenase I, chain L)
(NDH-1, chain L)
Length = 621
Score = 29.6 bits (65), Expect = 2.3
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = -1
Query: 310 ISLKLFFPSRFCFFVTINFNFLNSIFLR*IIRVLNCQITRFVFIM 176
I++ + P FCFFV+ N ++++ +LR + V + F+FI+
Sbjct: 572 INIFMSIPITFCFFVSKNLKYIHNGYLR--VYVFSIMFGLFLFIL 614
>sp|O51083|SECG_BORBU Probable protein-export membrane protein secG
Length = 125
Score = 29.3 bits (64), Expect = 3.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 146 DNELLNDIRLHNKNKSCDLTIENSNYSSQENGIEE 250
D+ LNDI+ NKN S ENS + N I+E
Sbjct: 85 DDSFLNDIKTENKNSSTFWDDENSESDANINEIKE 119
>sp|Q03721|KCNC4_HUMAN Potassium voltage-gated channel subfamily C member 4 (Voltage-gated
potassium channel subunit Kv3.4) (KSHIIIC)
Length = 635
Score = 28.5 bits (62), Expect = 5.1
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Frame = -1
Query: 322 YKSKISLKLFFPSRFCFFVTIN---------FNFLNSIFLR*IIRVLNCQITRFVFIMQT 170
Y S+ + + F S F V+I FN ++ I+RV N F ++T
Sbjct: 220 YSSRAARVVAFASLFFILVSITTFCLETHEAFNIDRNVTE--ILRVGNITSVHFRREVET 277
Query: 169 DVI*QFIINICKLRLYFQYML*IVCC 92
+ I +I +C L ++++ IVCC
Sbjct: 278 EPILTYIEGVCVLWFTLEFLVRIVCC 303
>sp|Q5BQN8|CENPJ_PANTR Centromere protein J
Length = 1338
Score = 28.5 bits (62), Expect = 5.1
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 119 EIKPQFTDIDNELLNDIRLHNKNKSCDLTIENSNYSSQENGIEEIKINGHKKTKSA 286
E PQ D + +K + DL + + +YSS E+ +E IK + ++S+
Sbjct: 730 EDSPQVCDDKGPFKDTRTQEDKRRDVDLDLSDKDYSSDESSMESIKHKVSEPSRSS 785
>sp|P33539|RPOP_AGABT Probable DNA-directed RNA polymerase
Length = 1102
Score = 28.5 bits (62), Expect = 5.1
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 98 NNLEHILEIKPQFTDIDNE---LLNDIRLHNKNKSCDLTIENSNYSSQENGIEEIKIN 262
N L I ++K + + +DNE + D L +CD+ +E ++S ++ E++IN
Sbjct: 403 NALYPINKLKDEISKLDNEGIYWIGDTLLGLITANCDIVVEELKWNSGKDSQLEVRIN 460
>sp|P34127|MYBH_DICDI Myb-like protein
Length = 451
Score = 28.1 bits (61), Expect = 6.6
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Frame = +2
Query: 17 NENNVLISLTGTRSSIEKSREMLTFATNNLEHILEIKPQFTDIDNELLNDIRLHNKNKSC 196
N +N+ I T ++SI + ++ NN+ N + N++ +N N
Sbjct: 78 NRHNISIPFTINKNSINNNNNLINNINNNI--------------NNMNNNMNNNNNNN-- 121
Query: 197 DLTIENSNYSSQENGIEEIKING-----HKKTKSAW 289
N N + NG I N KKTK W
Sbjct: 122 -----NMNNNINNNGNSNISNNNTPKVEKKKTKGKW 152
>sp|Q99JD4|CLAP2_RAT CLIP-associating protein 2 (Cytoplasmic linker-associated protein 2)
Length = 1286
Score = 28.1 bits (61), Expect = 6.6
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 83 LTFATNNLEHILEIKPQFTDIDNELLNDIRLHNKNKSCDLTIENSNYSSQENGIEEIKIN 262
LT TN ++ L P D D E +N +++ + I+N ++ SQE+ E +K +
Sbjct: 901 LTSPTNTSQNTLS--PSAFDYDTENMNSEDIYSSLRGVTEAIQNFSFRSQEDMSEPLKRD 958
Query: 263 GHKK 274
K+
Sbjct: 959 PKKE 962
>sp|Q9TU23|CE290_BOVIN Centrosomal protein Cep290
Length = 1453
Score = 28.1 bits (61), Expect = 6.6
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +2
Query: 41 LTGTRSSIEKSREMLTFATNNLEHI----LEIKPQFTDIDNEL-LNDIRLHNKNKSCDLT 205
LT I + ML TNNLEH+ + +K Q I+ EL + +LH ++ +
Sbjct: 51 LTAKYRDILQKDNMLVQRTNNLEHLECENVSLKEQMESINKELEITKEKLHTIEQAWEQE 110
Query: 206 IENSNYSSQENGIEEI 253
+ N S+ + + +
Sbjct: 111 TKLGNESNMDKAKKSV 126
>sp|O75122|CLAP2_HUMAN CLIP-associating protein 2 (Cytoplasmic linker-associated protein 2)
Length = 1294
Score = 28.1 bits (61), Expect = 6.6
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 83 LTFATNNLEHILEIKPQFTDIDNELLNDIRLHNKNKSCDLTIENSNYSSQENGIEEIKIN 262
LT TN ++ L P D D E +N +++ + I+N ++ SQE+ E +K +
Sbjct: 909 LTSPTNTSQNTLS--PSAFDYDTENMNSEDIYSSLRGVTEAIQNFSFRSQEDMNEPLKRD 966
Query: 263 GHK 271
K
Sbjct: 967 SKK 969
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,197,995
Number of Sequences: 369166
Number of extensions: 578372
Number of successful extensions: 1753
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 68,354,980
effective HSP length: 88
effective length of database: 52,098,300
effective search space used: 1719243900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)