Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_P16
(592 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07269|PHO2_YEAST Regulatory protein PHO2 (General regul... 34 0.24
sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4 34 0.31
sp|P32770|NRP1_YEAST Asparagine-rich protein (ARP protein) 34 0.31
sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 ... 33 0.70
sp|Q01836|P60_LISIN Protein p60 precursor (Invasion-associa... 32 1.6
sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lys... 31 2.6
sp|Q7M3S9|RNGB_DICDI Ring finger protein B (Protein rngB) 31 2.6
sp|P41696|AZF1_YEAST Asparagine-rich zinc finger protein AZF1 30 3.5
sp|Q8D228|HTPG_WIGBR Chaperone protein htpG (Heat shock pro... 30 3.5
sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP) 30 5.9
>sp|P07269|PHO2_YEAST Regulatory protein PHO2 (General regulatory factor 10)
Length = 559
Score = 34.3 bits (77), Expect = 0.24
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +3
Query: 9 SLTNTNEGLTANNNTNSDYFQFMGRYAGQESTD--ISTTFNSNTNHSGDLEDHIQNYQQL 182
S+TNTN G +NN GR A ++ T + TT NSN NH+ + E++ + L
Sbjct: 467 SITNTNNGQGSNN----------GRQASKDDTLNLLDTTVNSNNNHNANNEENHLAQEHL 516
Query: 183 S 185
S
Sbjct: 517 S 517
>sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4
Length = 187
Score = 33.9 bits (76), Expect = 0.31
Identities = 22/101 (21%), Positives = 45/101 (44%)
Frame = +3
Query: 12 LTNTNEGLTANNNTNSDYFQFMGRYAGQESTDISTTFNSNTNHSGDLEDHIQNYQQLSAF 191
+ + + +NNN+NS+ Y ++S + +N N++G+ N + S
Sbjct: 86 IDKVKQQINSNNNSNSNGPGHKRYYNNRDSNNNRGNYNRRNNNNGN-----SNRRPYSQN 140
Query: 192 QNYTNPHSSLTXXXXXXXXXXXHDTNSVLGYPISNNYNASS 314
+ Y N +SS + N+ LG + +++N+SS
Sbjct: 141 RQYNNSNSSNINNSINSINSNNQNMNNGLGGSVQHHFNSSS 181
>sp|P32770|NRP1_YEAST Asparagine-rich protein (ARP protein)
Length = 719
Score = 33.9 bits (76), Expect = 0.31
Identities = 27/102 (26%), Positives = 43/102 (42%)
Frame = +3
Query: 42 NNNTNSDYFQFMGRYAGQESTDISTTFNSNTNHSGDLEDHIQNYQQLSAFQNYTNPHSSL 221
NNN N+ RY +I+ N N N +G+ ++ N+ N+ N H +
Sbjct: 494 NNNNNNINNMTNNRY------NINNNINGNGNGNGNNSNNNNNHNN-----NHNNNHHNG 542
Query: 222 TXXXXXXXXXXXHDTNSVLGYPISNNYNASSNILGCTSNMPF 347
+ ++ N SNN N++ + GC SNMPF
Sbjct: 543 SINSNSNTNNNNNNNNG----NNSNNCNSNIGMGGCGSNMPF 580
>sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 (SWI/SNF complex component
SWI1) (Transcription regulatory protein ADR6)
(Regulatory protein GAM3)
Length = 1314
Score = 32.7 bits (73), Expect = 0.70
Identities = 27/108 (25%), Positives = 47/108 (43%)
Frame = +3
Query: 15 TNTNEGLTANNNTNSDYFQFMGRYAGQESTDISTTFNSNTNHSGDLEDHIQNYQQLSAFQ 194
T T T NNNTN++ A + + ST +SNTN++ + + + FQ
Sbjct: 15 TTTTTTTTNNNNTNNNNTNNNNNPANNTNNNNSTGHSSNTNNNTNNNNTNTGASGVDDFQ 74
Query: 195 NYTNPHSSLTXXXXXXXXXXXHDTNSVLGYPISNNYNASSNILGCTSN 338
N+ +P +++NS +NN N +SN + ++N
Sbjct: 75 NFFDP-----KPFDQNLDSNNNNSNS------NNNDNNNSNTVASSTN 111
>sp|Q01836|P60_LISIN Protein p60 precursor (Invasion-associated protein)
Length = 467
Score = 31.6 bits (70), Expect = 1.6
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 3 PISLTNTNEGLTANNNTNSDYFQFMGRYAGQESTDISTTFNSNTN 137
P TNTN+ T NNNTN+ ++T+ +T N+NTN
Sbjct: 305 PAPSTNTNKTNTTNNNTNAS--------TPSKNTNTNTNTNTNTN 341
>sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lysis A (Tyrosine-protein kinase
1)
Length = 1584
Score = 30.8 bits (68), Expect = 2.6
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 13/117 (11%)
Frame = +3
Query: 6 ISLTNTNEGLTANNNTNSDYFQFMGRYAGQEST-------------DISTTFNSNTNHSG 146
I + N N +NNN N++ +G +T DIS+ N+N N++
Sbjct: 399 ILVPNGNNNNNSNNNNNNNNNNIIGNGKITTTTTTSTSPSSINNNEDISSNNNNNNNNNN 458
Query: 147 DLEDHIQNYQQLSAFQNYTNPHSSLTXXXXXXXXXXXHDTNSVLGYPISNNYNASSN 317
+ ++ N + N N +SS T +++NS +NN N++SN
Sbjct: 459 NNNNNNNNNNNNNNNNNNNNSNSSNTNNNNINNTTNNNNSNSNNN---NNNNNSNSN 512
Score = 30.0 bits (66), Expect = 4.5
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
Frame = +3
Query: 18 NTNEGLTANNNTNSDYFQFMGRYAGQESTDISTTFNSNTNHSGDLEDHIQNYQQLSAFQN 197
N N NNN NS+ + + ++ N+N N++ + N ++ N
Sbjct: 466 NNNNNNNNNNNNNSNSSNTNNNNINNTTNNNNSNSNNNNNNNNSNSNSNSNNNNINNNNN 525
Query: 198 YTNPHSSL-TXXXXXXXXXXXHDTNSVLGYPISNNYNASSNILGCTSNM 341
N ++++ T S+ G S N N+SS +G S++
Sbjct: 526 NNNNNNNIYLTKKPSIGSTDESSTGSLGGNNSSGNNNSSSGSIGNNSSI 574
>sp|Q7M3S9|RNGB_DICDI Ring finger protein B (Protein rngB)
Length = 943
Score = 30.8 bits (68), Expect = 2.6
Identities = 16/67 (23%), Positives = 33/67 (49%)
Frame = +3
Query: 24 NEGLTANNNTNSDYFQFMGRYAGQESTDISTTFNSNTNHSGDLEDHIQNYQQLSAFQNYT 203
N+ NNN N++ +T + N+N N++ + +++++ QQ Q+ T
Sbjct: 406 NQNQNQNNNNNNNNNNNNNIQTTTTTTTNNNNNNNNNNNNNNNNNNVESNQQQQQIQHQT 465
Query: 204 NPHSSLT 224
+P S L+
Sbjct: 466 SPMSVLS 472
>sp|P41696|AZF1_YEAST Asparagine-rich zinc finger protein AZF1
Length = 914
Score = 30.4 bits (67), Expect = 3.5
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +3
Query: 36 TANNNTNSDYFQFMGRYAGQESTDISTTFNSNTNHS--GDLEDHIQNYQQLSAFQNYTNP 209
+ N NTN+DY F +++ + F S+ N+S + ED +++ ++F T
Sbjct: 251 SGNMNTNADYESFFNTGTNNSNSNQNPYFLSSRNNSLKFNPEDFDFQFKRRNSFVRGTLD 310
Query: 210 HSSLTXXXXXXXXXXXHDTNSVLGYPISNN 299
HSS N G P+++N
Sbjct: 311 HSSQNAFIPESRLNSLSVNNKANGDPVADN 340
>sp|Q8D228|HTPG_WIGBR Chaperone protein htpG (Heat shock protein htpG) (High temperature
protein G)
Length = 638
Score = 30.4 bits (67), Expect = 3.5
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +3
Query: 12 LTNTNEGLTANNNTNSDYFQFMGRYAGQESTDISTTFNSNTNHSGDLEDHIQNYQQLSAF 191
LTN+ +T + N + + GQES +I F N NH + H+ N + + F
Sbjct: 540 LTNSPSTVTTDENDITTQMSKLLISTGQESPEIKYIFELNANH--PIIKHVFNIEDKNIF 597
Query: 192 QNY 200
N+
Sbjct: 598 NNW 600
>sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP)
Length = 443
Score = 29.6 bits (65), Expect = 5.9
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +3
Query: 3 PISLTNTNEGLTANNNTNSDYFQFMGRYAGQESTDISTTFNSNTNHSGDLEDHIQNYQQL 182
P L N N + NNN N++ Q ++ ++ + +N N LED ++N L
Sbjct: 252 PNHLNNNNNNINNNNNNNNNNNNNNNVMFRQNNSHLAQMYQANDN---SLED-VENVDGL 307
Query: 183 SAFQNYTNPHSSL 221
S ++ Y + ++++
Sbjct: 308 SLWEMYKDKNNNI 320
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,439,023
Number of Sequences: 369166
Number of extensions: 773060
Number of successful extensions: 1999
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1972
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4455160255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)