Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_P10
(313 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q68W66|KSGA_RICTY Dimethyladenosine transferase (S-adeno... 29 2.9
sp|P39846|PPS2_BACSU Peptide synthetase 2 28 5.0
sp|Q9V3I5|JIL1_DROME Chromosomal serine/threonine-protein k... 28 5.0
sp|O60613|SEP15_HUMAN 15 kDa selenoprotein precursor 28 5.0
sp|Q92GV0|KSGA_RICCN Dimethyladenosine transferase (S-adeno... 28 6.6
sp|Q9V496|APLP_DROME Apolipophorins precursor (Retinoid- an... 28 8.6
>sp|Q68W66|KSGA_RICTY Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase)
Length = 268
Score = 29.3 bits (64), Expect = 2.9
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 102 RVSILAEVVAKISRCLDDRPQ*MTAFY 182
R+S++ ++VAK+ +C D P TAFY
Sbjct: 162 RLSVICQIVAKVEKCFDVAP---TAFY 185
>sp|P39846|PPS2_BACSU Peptide synthetase 2
Length = 2560
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 165 IVADHPNIWRFLQLLQREYSLVKVSIDQHLGGYPFE 58
++ DH I LQ + EYS+ + I HL Y F+
Sbjct: 625 VLVDHHGIANTLQWRREEYSMTEQDISLHLFSYVFD 660
>sp|Q9V3I5|JIL1_DROME Chromosomal serine/threonine-protein kinase JIL-1
Length = 1207
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 276 QLSQDNRNIMSGTSTVRLKKIYHRPTIEGWHCKMQSSIVADHPN 145
+L + N I+SGTST RLK H E + +V +H N
Sbjct: 3 RLQKQNYEILSGTSTSRLKNHQHpreSESLAYEEPDQMVRNHLN 46
>sp|O60613|SEP15_HUMAN 15 kDa selenoprotein precursor
Length = 162
Score = 28.5 bits (62), Expect = 5.0
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = -2
Query: 282 LLQLSQDNRNIMSGTSTVRLKKIYHRPTIEGWHCKM------QSSIVADHPNIWRFLQL 124
LLQL D R + KK+Y +E CK+ Q+ + +D P ++R LQ+
Sbjct: 60 LLQLDPDCRGCCQEEAQFETKKLYAGAILEVCGCKLGRFPQVQAFVRSDKPKLFRGLQI 118
>sp|Q92GV0|KSGA_RICCN Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase)
Length = 301
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 102 RVSILAEVVAKISRCLDDRPQ*MTAFY 182
R+S++ +++AK+ +C D P TAFY
Sbjct: 195 RLSVICQLIAKVEKCFDVAP---TAFY 218
>sp|Q9V496|APLP_DROME Apolipophorins precursor (Retinoid- and fatty acid-binding
glycoprotein) [Contains: Apolipophorin-2 (Apolipophorin
II) (ApoL2); Apolipophorin-1 (Apolipophorin I) (ApoL1)]
Length = 3351
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 279 LQLSQDNRNIMSGTSTVRLKKIYHRPTIEG 190
+QL +N I SGT+T LKK ++ I+G
Sbjct: 1956 IQLKNENGIIFSGTATYALKKELNKTIIDG 1985
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,593,531
Number of Sequences: 369166
Number of extensions: 656518
Number of successful extensions: 1314
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 68,354,980
effective HSP length: 72
effective length of database: 55,054,060
effective search space used: 1706675860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)