Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_P05
(247 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9TVL3|CDK9_CAEEL Probable cell division protein kinase ... 33 0.27
sp|P40160|RIO2_YEAST Serine/threonine-protein kinase RIO2 32 0.59
sp|Q641Z4|CDK9_RAT Cell division protein kinase 9 (Cyclin-d... 32 0.59
sp|Q5EAB2|CDK9_BOVIN Cell division protein kinase 9 (Cyclin... 32 0.59
sp|Q81VE5|REX_BACAN Redox-sensing transcriptional repressor... 31 0.77
sp|P50750|CDK9_HUMAN Cell division protein kinase 9 (Cyclin... 31 0.77
sp|P19525|E2AK2_HUMAN Interferon-induced, double-stranded R... 31 0.77
sp|Q81IS6|REX_BACCR Redox-sensing transcriptional repressor... 31 0.77
sp|Q7ZX42|CDK9B_XENLA Cell division protein kinase 9-B (Cyc... 30 1.3
sp|P23293|SGV1_YEAST Serine/threonine-protein kinase SGV1 29 2.9
>sp|Q9TVL3|CDK9_CAEEL Probable cell division protein kinase 9 (Cyclin-dependent kinase 9)
Length = 478
Score = 32.7 bits (73), Expect = 0.27
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 96 HKFCRETLNQEQLPESELIGSGTFGELFKYQISNTNREFVIK 221
+ F R+ E+L + IG GTFGE+FK + NT R +K
Sbjct: 76 YPFIRDVSTYEKLNK---IGQGTFGEVFKARCKNTGRMVALK 114
>sp|P40160|RIO2_YEAST Serine/threonine-protein kinase RIO2
Length = 425
Score = 31.6 bits (70), Expect = 0.59
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +3
Query: 75 QCTINCDHKFCRETLNQEQLPESELIGSGTFGELFKYQISNTNREFVIKHTKDVGE 242
Q ++C +F ++ L E P+S ++ + FG+ +KY + R+ +K T ++ E
Sbjct: 270 QRDVDCIRRFFKKKLKYEPKPDSSMLDTEGFGDGYKYAYPDFKRD--VKRTDNLDE 323
>sp|Q641Z4|CDK9_RAT Cell division protein kinase 9 (Cyclin-dependent kinase 9)
sp|Q99J95|CDK9_MOUSE Cell division protein kinase 9 (Cyclin-dependent kinase 9)
Length = 372
Score = 31.6 bits (70), Expect = 0.59
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 102 FCRETLNQEQLPESELIGSGTFGELFKYQISNTNREFVIK 221
FC E E+L + IG GTFGE+FK + T ++ +K
Sbjct: 12 FCDEVTKYEKLAK---IGQGTFGEVFKAKHRQTGQKVALK 48
>sp|Q5EAB2|CDK9_BOVIN Cell division protein kinase 9 (Cyclin-dependent kinase 9)
Length = 372
Score = 31.6 bits (70), Expect = 0.59
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 102 FCRETLNQEQLPESELIGSGTFGELFKYQISNTNREFVIK 221
FC E E+L + IG GTFGE+FK + T ++ +K
Sbjct: 12 FCDEVTKYEKLAK---IGQGTFGEVFKAKHRKTGQKVALK 48
>sp|Q81VE5|REX_BACAN Redox-sensing transcriptional repressor rex
Length = 209
Score = 31.2 bits (69), Expect = 0.77
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 102 FCRETLNQEQLPESELIGSGTFGELFKYQISNTNREFVIKHTKDVGED 245
F RETL+Q+ + LIG G G F + N I+ DV E+
Sbjct: 73 FFRETLDQDDITRVALIGVGNLGTAFLHYNFTKNNNTKIEMAFDVSEE 120
>sp|P50750|CDK9_HUMAN Cell division protein kinase 9 (Cyclin-dependent kinase 9)
(Serine/threonine-protein kinase PITALRE) (C-2K) (Cell
division cycle 2-like protein kinase 4)
Length = 372
Score = 31.2 bits (69), Expect = 0.77
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 102 FCRETLNQEQLPESELIGSGTFGELFKYQISNTNREFVIK 221
FC E E+L + IG GTFGE+FK + T ++ +K
Sbjct: 12 FCDEVSKYEKLAK---IGQGTFGEVFKARHRKTGQKVALK 48
>sp|P19525|E2AK2_HUMAN Interferon-induced, double-stranded RNA-activated protein kinase
(Interferon-inducible RNA-dependent protein kinase) (p68
kinase) (P1/eIF-2A protein kinase)
Length = 551
Score = 31.2 bits (69), Expect = 0.77
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 138 ESELIGSGTFGELFKYQISNTNREFVIKHTK 230
E ELIGSG FG++FK + + +VIK K
Sbjct: 269 EIELIGSGGFGQVFKAKHRIDGKTYVIKRVK 299
>sp|Q81IS6|REX_BACCR Redox-sensing transcriptional repressor rex
Length = 209
Score = 31.2 bits (69), Expect = 0.77
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 102 FCRETLNQEQLPESELIGSGTFGELFKYQISNTNREFVIKHTKDVGED 245
F RETL+Q+ + LIG G G F + N I+ DV E+
Sbjct: 73 FFRETLDQDDITRVALIGVGNLGTAFLHYNFTKNNNTKIEMAFDVSEE 120
>sp|Q7ZX42|CDK9B_XENLA Cell division protein kinase 9-B (Cyclin-dependent kinase 9-B)
Length = 376
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 102 FCRETLNQEQLPESELIGSGTFGELFKYQISNTNREFVIK 221
+C E E+L + IG GTFGE+FK + T ++ +K
Sbjct: 12 YCDEVSKYERLAK---IGQGTFGEVFKAKHRQTGKKVALK 48
>sp|P23293|SGV1_YEAST Serine/threonine-protein kinase SGV1
Length = 657
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 114 TLNQEQLPESELIGSGTFGELFKYQISNTNREFVIK 221
T+ Q E E +G GTFGE++K T R+ +K
Sbjct: 54 TVFQNHYREDEKLGQGTFGEVYKGIHLETQRQVAMK 89
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,610,884
Number of Sequences: 369166
Number of extensions: 400866
Number of successful extensions: 1557
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 68,354,980
effective HSP length: 52
effective length of database: 58,748,760
effective search space used: 1703714040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)