Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_O21
(895 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NRR5|UBQL4_HUMAN Ubiquilin-4 (Ataxin-1 ubiquitin-like ... 109 1e-23
sp|Q99NB8|UBQL4_MOUSE Ubiquilin-4 (Ataxin-1 ubiquitin-like ... 107 3e-23
sp|Q8R317|UBQL1_MOUSE Ubiquilin-1 (Protein linking IAP with... 86 1e-16
sp|Q9UMX0|UBQL1_HUMAN Ubiquilin-1 (Protein linking IAP with... 86 2e-16
sp|Q9UHD9|UBQL2_HUMAN Ubiquilin-2 (Protein linking IAP with... 85 2e-16
sp|Q9JJP9|UBQL1_RAT Ubiquilin-1 (Protein linking IAP with c... 84 7e-16
sp|Q9QZM0|UBQL2_MOUSE Ubiquilin-2 (Protein linking IAP with... 79 2e-14
sp|Q10169|DPH1_SCHPO Deubiquitination-protection protein dph1 52 3e-06
sp|Q9H347|UBQL3_HUMAN Ubiquilin-3 47 9e-05
sp|Q8C5U9|UBQL3_MOUSE Ubiquilin-3 42 0.002
>sp|Q9NRR5|UBQL4_HUMAN Ubiquilin-4 (Ataxin-1 ubiquitin-like interacting protein A1U)
Length = 601
Score = 109 bits (272), Expect = 1e-23
Identities = 95/325 (29%), Positives = 123/325 (37%), Gaps = 28/325 (8%)
Frame = +1
Query: 1 AFPGGMNHLTRLYRDVQEPLMDATT---GTNPFASLANRXXXXXXXRHGTENNEPLXXXX 171
+ PGG N L R+Y D+QEP+ A G NPF+SLA TEN EPL
Sbjct: 274 SIPGGYNALRRMYTDIQEPMFSAAREQFGNNPFSSLAGNSDSSSSQPLRTENREPL---- 329
Query: 172 XXXXXXXXXXXXXXXXXXXXXXXGGNTQINIPSNLPSAENLHNL-LGSFNDPRIQ----- 333
G +Q++ + P N +L G FN P +Q
Sbjct: 330 PNPWSPSPPTSQAPGSGGEGTGGSGTSQVHPTVSNPFGINAASLGSGMFNSPEMQALLQQ 389
Query: 334 ------------------SLIETLRSNPQFTEMAIANSPA-AANPQLQEQLRNSMPQVLQ 456
S+++TL NP F + N P A NPQLQEQLR +P LQ
Sbjct: 390 ISENPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQ 449
Query: 457 AFERPEVRNALTNPRVLQAIFXXXXXXXXXXXEAPHLXXXXXXXXXXXXXXXXXXXXXXX 636
+ PE + LTNPR +QA+ EAP L
Sbjct: 450 QMQNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGISRTPAPSAGSNAGS 509
Query: 637 XXGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPGAGLNSAVGGNPEQLYSSELETMA 816
G+G NS V PE + +LE +
Sbjct: 510 TPEAPTSSPATPATSSPTGASSAQQQLMQQMIQLLAGSG-NSQV-QTPEVRFQQQLEQLN 567
Query: 817 QMGFPNRQANLRALIETFGDVNAAV 891
MGF NR+ANL+ALI T GD+NAA+
Sbjct: 568 SMGFINREANLQALIATGGDINAAI 592
>sp|Q99NB8|UBQL4_MOUSE Ubiquilin-4 (Ataxin-1 ubiquitin-like interacting protein A1U)
Length = 596
Score = 107 bits (268), Expect = 3e-23
Identities = 95/323 (29%), Positives = 122/323 (37%), Gaps = 28/323 (8%)
Frame = +1
Query: 7 PGGMNHLTRLYRDVQEPLMDATT---GTNPFASLANRXXXXXXXRHGTENNEPLXXXXXX 177
PGG N L R+Y D+QEP+ A G NPF+SLA TEN EPL
Sbjct: 271 PGGYNALRRMYTDIQEPMFTAAREQFGNNPFSSLAGNSDNSSSQPLRTENREPL----PN 326
Query: 178 XXXXXXXXXXXXXXXXXXXXXGGNTQINIPSNLPSAENLHNL-LGSFNDPRIQSLI---- 342
G +Q++ + P N +L G FN P +Q+L+
Sbjct: 327 PWSPSPPTSQAPGSGGEGTGGSGTSQVHPTVSNPFGINAASLGSGMFNSPEMQALLQQIS 386
Query: 343 -------------------ETLRSNPQFTEMAIANSPA-AANPQLQEQLRNSMPQVLQAF 462
+TL NP F + N P A NPQLQEQLR +P LQ
Sbjct: 387 ENPQLMQNVISAPYMRTMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQM 446
Query: 463 ERPEVRNALTNPRVLQAIFXXXXXXXXXXXEAPHLXXXXXXXXXXXXXXXXXXXXXXXXX 642
+ PE + LTNPR +QA+ EAP L
Sbjct: 447 QNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGTPRTSVPLAGSNSGSSA 506
Query: 643 GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPGAGLNSAVGGNPEQLYSSELETMAQM 822
G+G NS V PE + +LE + M
Sbjct: 507 EAPTSSPGVPATSPPSAGSNAQQQLMQQMIQLLSGSG-NSQV-PMPEVRFQQQLEQLNSM 564
Query: 823 GFPNRQANLRALIETFGDVNAAV 891
GF NR+ANL+ALI T GD+NAA+
Sbjct: 565 GFINREANLQALIATGGDINAAI 587
>sp|Q8R317|UBQL1_MOUSE Ubiquilin-1 (Protein linking IAP with cytoskeleton-1) (PLIC-1)
Length = 582
Score = 85.9 bits (211), Expect = 1e-16
Identities = 64/220 (29%), Positives = 92/220 (41%), Gaps = 31/220 (14%)
Frame = +1
Query: 1 AFPGGMNHLTRLYRDVQEPLMDATT---GTNPFASLANRXXXXXXXRHG-TENNEPLXXX 168
+ PGG N L R+Y D+QEP+++A G NPFASL + + TEN +PL
Sbjct: 255 SIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFASLVSSSSSAEGTQPSRTENRDPLPNP 314
Query: 169 XXXXXXXXXXXXXXXXXXXXXXXXGGNTQINIPS-NLPSAENLHNLLGS--FNDPRIQSL 339
G T + P+ S +L G+ FN P +QSL
Sbjct: 315 WAPQTSQSSPASGTTGSTTNTMSTSGGTATSTPAGQSTSGPSLVPGAGASMFNTPGMQSL 374
Query: 340 IETLRSNPQF------------------------TEMAIANSPAAANPQLQEQLRNSMPQ 447
++ + NPQ +M + N A NPQLQEQ+R +P
Sbjct: 375 LQQITENPQLMQNMLSAPYMRSMLQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPT 434
Query: 448 VLQAFERPEVRNALTNPRVLQAIFXXXXXXXXXXXEAPHL 567
LQ + P+ +A++NPR +QA+ EAP L
Sbjct: 435 FLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGL 474
Score = 48.1 bits (113), Expect = 3e-05
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1
Query: 748 AGLNSAVGGNPEQLYSSELETMAQMGFPNRQANLRALIETFGDVNAAV 891
AG+N + +PE + +LE ++ MGF NR+ANL+ALI T GD+NAA+
Sbjct: 527 AGVNPQLQ-SPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAI 573
Score = 33.9 bits (76), Expect = 0.63
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +1
Query: 304 LGSFNDPRIQSLIET-LRSNPQFTEMAIAN---SPAAANPQLQEQLRNSMPQVLQAFER- 468
L + N +QS ++ L SNP+ + N +NP L QL + PQ+ Q +R
Sbjct: 154 LNTTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRN 213
Query: 469 PEVRNALTNPRVLQ 510
PE+ + L NP +++
Sbjct: 214 PEISHMLNNPDIMR 227
>sp|Q9UMX0|UBQL1_HUMAN Ubiquilin-1 (Protein linking IAP with cytoskeleton-1) (PLIC-1)
(hPLIC-1)
Length = 589
Score = 85.5 bits (210), Expect = 2e-16
Identities = 65/219 (29%), Positives = 91/219 (41%), Gaps = 30/219 (13%)
Frame = +1
Query: 1 AFPGGMNHLTRLYRDVQEPLMDATT---GTNPFASL-ANRXXXXXXXRHGTENNEPLXXX 168
+ PGG N L R+Y D+QEP++ A G NPFASL +N TEN +PL
Sbjct: 264 SIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLVSNTSSGEGSQPSRTENRDPLPNP 323
Query: 169 XXXXXXXXXXXXXXXXXXXXXXXXGGNTQINIPSNLPSAENLHNLLGS--FNDPRIQSLI 342
G+T +A NL +G+ FN P +QSL+
Sbjct: 324 WAPQTSQSSSASSGTASTVGGTT--GSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSLL 381
Query: 343 ETLRSNPQF------------------------TEMAIANSPAAANPQLQEQLRNSMPQV 450
+ + NPQ +M + N A NPQLQEQ+R +P
Sbjct: 382 QQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTF 441
Query: 451 LQAFERPEVRNALTNPRVLQAIFXXXXXXXXXXXEAPHL 567
LQ + P+ +A++NPR +QA+ EAP L
Sbjct: 442 LQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGL 480
Score = 50.1 bits (118), Expect = 8e-06
Identities = 25/48 (52%), Positives = 35/48 (72%)
Frame = +1
Query: 748 AGLNSAVGGNPEQLYSSELETMAQMGFPNRQANLRALIETFGDVNAAV 891
AG+N + NPE + +LE ++ MGF NR+ANL+ALI T GD+NAA+
Sbjct: 534 AGVNPQLQ-NPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAI 580
Score = 33.9 bits (76), Expect = 0.63
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +1
Query: 304 LGSFNDPRIQSLIET-LRSNPQFTEMAIAN---SPAAANPQLQEQLRNSMPQVLQAFER- 468
L + N +QS ++ L SNP+ + N +NP L QL + PQ+ Q +R
Sbjct: 163 LNTTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRN 222
Query: 469 PEVRNALTNPRVLQ 510
PE+ + L NP +++
Sbjct: 223 PEISHMLNNPDIMR 236
>sp|Q9UHD9|UBQL2_HUMAN Ubiquilin-2 (Protein linking IAP with cytoskeleton-2) (PLIC-2)
(hPLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2
homolog) (Chap1)
Length = 624
Score = 85.1 bits (209), Expect = 2e-16
Identities = 62/215 (28%), Positives = 93/215 (43%), Gaps = 26/215 (12%)
Frame = +1
Query: 1 AFPGGMNHLTRLYRDVQEPLMDATT---GTNPFASLANRXXXXXXXRHG-TENNEPLXXX 168
+ PGG N L R+Y D+QEP+++A G NPFAS+ + + TEN +PL
Sbjct: 260 SIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFASVGSSSSSGEGTQPSRTENRDPL--P 317
Query: 169 XXXXXXXXXXXXXXXXXXXXXXXXGGNTQINIPSNLPSAEN----------LHNLLGSFN 318
GN+ N N +A N + +LL
Sbjct: 318 NPWAPPPATQSSATTSTTTSTGSGSGNSSSNATGNTVAAANYVASIFSTPGMQSLLQQIT 377
Query: 319 D-----------PRIQSLIETLRSNPQFTEMAIANSPA-AANPQLQEQLRNSMPQVLQAF 462
+ P ++S++++L NP + NSP ANPQLQEQ+R +P LQ
Sbjct: 378 ENPQLIQNMLSAPYMRSMMQSLSQNPDLAAQMMLNSPLFTANPQLQEQMRPQLPAFLQQM 437
Query: 463 ERPEVRNALTNPRVLQAIFXXXXXXXXXXXEAPHL 567
+ P+ +A++NPR +QA+ EAP L
Sbjct: 438 QNPDTLSAMSNPRAMQALMQIQQGLQTLATEAPGL 472
Score = 50.8 bits (120), Expect = 5e-06
Identities = 25/48 (52%), Positives = 33/48 (68%)
Frame = +1
Query: 748 AGLNSAVGGNPEQLYSSELETMAQMGFPNRQANLRALIETFGDVNAAV 891
AG N+ NPE + +LE + MGF NR+ANL+ALI T GD+NAA+
Sbjct: 568 AGANAPQLPNPEVRFQQQLEQLNAMGFLNREANLQALIATGGDINAAI 615
Score = 32.0 bits (71), Expect = 2.4
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +1
Query: 304 LGSFNDPRIQSLIET-LRSNPQFTEMAIAN---SPAAANPQLQEQLRNSMPQVLQAFER- 468
L S N +QS ++ L ++P+ + N +NP L QL + PQ+ Q +R
Sbjct: 159 LSSTNFSELQSQMQQQLMASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRN 218
Query: 469 PEVRNALTNPRVLQ 510
PE+ + L NP +++
Sbjct: 219 PEISHLLNNPDIMR 232
>sp|Q9JJP9|UBQL1_RAT Ubiquilin-1 (Protein linking IAP with cytoskeleton-1) (PLIC-1)
Length = 582
Score = 83.6 bits (205), Expect = 7e-16
Identities = 63/220 (28%), Positives = 90/220 (40%), Gaps = 31/220 (14%)
Frame = +1
Query: 1 AFPGGMNHLTRLYRDVQEPLMDATT---GTNPFASLANRXXXXXXXRHG-TENNEPLXXX 168
+ PGG N L R+Y D+QEP+++A G NPFASL + + TEN +PL
Sbjct: 255 SIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFASLVSSPSSAEGTQPSRTENRDPLPNP 314
Query: 169 XXXXXXXXXXXXXXXXXXXXXXXXGGNTQINIPSNL-PSAENLHNLLGS--FNDPRIQSL 339
+ P+ S NL G+ FN P +QSL
Sbjct: 315 WAPQTPQSSPASGSTGSTTNTVSTSAGNATSTPAGQGTSGPNLVPGAGASMFNTPGMQSL 374
Query: 340 IETLRSNPQF------------------------TEMAIANSPAAANPQLQEQLRNSMPQ 447
++ + NPQ +M + N A NPQLQEQ+R +P
Sbjct: 375 LQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPT 434
Query: 448 VLQAFERPEVRNALTNPRVLQAIFXXXXXXXXXXXEAPHL 567
LQ + P+ +A++NPR +QA+ EAP L
Sbjct: 435 FLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGL 474
Score = 48.1 bits (113), Expect = 3e-05
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1
Query: 748 AGLNSAVGGNPEQLYSSELETMAQMGFPNRQANLRALIETFGDVNAAV 891
AG+N + +PE + +LE ++ MGF NR+ANL+ALI T GD+NAA+
Sbjct: 527 AGVNPQLQ-SPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAI 573
Score = 34.7 bits (78), Expect = 0.37
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +1
Query: 304 LGSFNDPRIQSLIET-LRSNPQFTEMAIAN---SPAAANPQLQEQLRNSMPQVLQAFER- 468
L + N +QS ++ L SNP+ + N +NP L QL + PQ+ Q +R
Sbjct: 154 LNTTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRN 213
Query: 469 PEVRNALTNPRVLQ 510
PE+ + L NP +++
Sbjct: 214 PEISHMLNNPNIMR 227
>sp|Q9QZM0|UBQL2_MOUSE Ubiquilin-2 (Protein linking IAP with cytoskeleton-2) (PLIC-2)
(Ubiquitin-like product Chap1/Dsk2) (DSK2 homolog)
(Chap1)
Length = 638
Score = 79.0 bits (193), Expect = 2e-14
Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 27/216 (12%)
Frame = +1
Query: 1 AFPGGMNHLTRLYRDVQEPLMDATT---GTNPFASLANRXXXXXXXRHG-TENNEPLXXX 168
+ PGG N L R+Y D+QEP+++A G NPFA++ + + TEN +PL
Sbjct: 271 SIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFATVGSSSTSGEGTQPSRTENRDPLPNP 330
Query: 169 XXXXXXXXXXXXXXXXXXXXXXXXGGNTQ-----------INIPSNLPSAENLHNLLGSF 315
G++ N +++ S + +LL
Sbjct: 331 WAPPPTTQTAATTTTTTTTSSGSGSGSSSSSTTAGNTMAAANYVASIFSTPGMQSLLQQI 390
Query: 316 ND-----------PRIQSLIETLRSNPQFTEMAIANSPA-AANPQLQEQLRNSMPQVLQA 459
+ P ++S++++L NP + +SP +NPQLQEQ+R +P LQ
Sbjct: 391 TENPQLIQNMLSAPYMRSMMQSLSQNPDMAAQMMLSSPLFTSNPQLQEQMRPQLPNFLQQ 450
Query: 460 FERPEVRNALTNPRVLQAIFXXXXXXXXXXXEAPHL 567
+ PE A++NPR +QA+ EAP L
Sbjct: 451 MQNPETIAAMSNPRAMQALMQIQQGLQTLATEAPGL 486
Score = 48.1 bits (113), Expect = 3e-05
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = +1
Query: 775 NPEQLYSSELETMAQMGFPNRQANLRALIETFGDVNAAV 891
NPE + +LE + MGF NR+ANL+ALI T GD+NAA+
Sbjct: 591 NPEVRFQQQLEQLNAMGFLNREANLQALIATGGDINAAI 629
Score = 32.0 bits (71), Expect = 2.4
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +1
Query: 310 SFNDPRIQSLIETLRSNPQFTEMAIANSPAAANPQLQEQLRNSMPQVLQAFERPEVRNAL 489
SF + SL ++P FTE+ Q+Q+QL S ++Q E P V++ L
Sbjct: 156 SFGLGSLSSLSNLGLNSPNFTEL---------RNQMQQQLLASPEMMIQIMENPFVQSML 206
Query: 490 TNPRVLQAI 516
+NP +++ +
Sbjct: 207 SNPDLMRQL 215
Score = 31.2 bits (69), Expect = 4.1
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 271 NLPSAENLHNLLGSFNDPRIQSLIETLRSNPQFTEMAIAN---SPAAANPQLQEQLRNSM 441
+L S NL +F + R Q + + L ++P+ + N +NP L QL +
Sbjct: 161 SLSSLSNLGLNSPNFTELRNQ-MQQQLLASPEMMIQIMENPFVQSMLSNPDLMRQLIMAN 219
Query: 442 PQVLQAFER-PEVRNALTNPRVLQ 510
PQ+ Q +R PE+ + L NP +++
Sbjct: 220 PQMQQLIQRNPEISHLLNNPDIMR 243
>sp|Q10169|DPH1_SCHPO Deubiquitination-protection protein dph1
Length = 354
Score = 51.6 bits (122), Expect = 3e-06
Identities = 33/90 (36%), Positives = 48/90 (53%)
Frame = +1
Query: 241 GGNTQINIPSNLPSAENLHNLLGSFNDPRIQSLIETLRSNPQFTEMAIANSPAAANPQLQ 420
G N + +P PS E L N+L ++P +QS I + SNPQ +M I +SP
Sbjct: 130 GPNPENPVP---PSTEELANML---SNPMVQSSINEMFSNPQMLDMIINSSP-------- 175
Query: 421 EQLRNSMPQVLQAFERPEVRNALTNPRVLQ 510
LRN+ P V Q + PE R A+T+P ++
Sbjct: 176 -HLRNAPPYVRQMMQSPEFRRAMTDPDTMR 204
Score = 32.7 bits (73), Expect = 1.4
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 12/60 (20%)
Frame = +1
Query: 748 AGLNSAVGGN------------PEQLYSSELETMAQMGFPNRQANLRALIETFGDVNAAV 891
AGL + +GG PE+ Y+ +L + +MGF + + N++AL + G+V A+
Sbjct: 288 AGLGAGLGGAASPPAPAQDTRPPEERYAEQLSQLNEMGFVDFERNVQALRRSGGNVQGAI 347
>sp|Q9H347|UBQL3_HUMAN Ubiquilin-3
Length = 655
Score = 46.6 bits (109), Expect = 9e-05
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Frame = +1
Query: 754 LNSAVGGNPEQL-----YSSELETMAQMGFPNRQANLRALIETFGDVNAAV 891
L V NP+QL + +LE + MGF NR+ANL+ALI T GDV+AAV
Sbjct: 599 LQDLVSTNPQQLQPEAHFQVQLEQLRSMGFLNREANLQALIATGGDVDAAV 649
Score = 32.3 bits (72), Expect = 1.8
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 1 AFPGGMNHLTRLYRDVQEPLMDATT---GTNPFAS 96
+ PGG N L +Y D+ +P+++A G NPFA+
Sbjct: 246 SIPGGYNVLCTMYTDIMDPMLNAVQEQFGGNPFAT 280
>sp|Q8C5U9|UBQL3_MOUSE Ubiquilin-3
Length = 658
Score = 42.0 bits (97), Expect = 0.002
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Frame = +1
Query: 754 LNSAVGGNPEQL-----YSSELETMAQMGFPNRQANLRALIETFGDVNAAV 891
L + NP+QL + +LE + MGF N +ANL+ALI T GDV+AAV
Sbjct: 602 LQALASTNPQQLQLEAHFRVQLEQLRAMGFLNLEANLQALIATEGDVDAAV 652
Score = 32.3 bits (72), Expect = 1.8
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 1 AFPGGMNHLTRLYRDVQEPLMDATT---GTNPFASLANRXXXXXXXRHG-TENNEPL 159
+ PGG N L +Y D+ +P+++A G NPF + + TEN +PL
Sbjct: 246 SIPGGYNVLRTMYTDIMDPMLNAVQEQFGGNPFVTATTASTTTTSSQPSRTENCDPL 302
Score = 30.0 bits (66), Expect = 9.1
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 409 PQLQEQLRNSMPQVLQAFERPEVRNALTNPRVLQAIFXXXXXXXXXXXEAPHL 567
P++Q ++ +P +L ++ A+ NPRV+QA+ EAP L
Sbjct: 498 PRIQNEIHQQLPLLLH------LQTAMANPRVMQALLQIEQGLQILATEAPRL 544
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.313 0.130 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,779,843
Number of Sequences: 369166
Number of extensions: 1922282
Number of successful extensions: 3423
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3406
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8982382310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)