Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_N18
(617 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04746|YMV5_YEAST Hypothetical 58.4 kDa protein in NCA1-... 36 0.090
sp|P19598|MSP1_PLAF3 Merozoite surface protein 1 precursor ... 35 0.15
sp|O29979|SYE_ARCFU Glutamyl-tRNA synthetase (Glutamate--tR... 35 0.20
sp|P03198|DPOL_EBV DNA polymerase 34 0.26
sp|P04934|MSP1_PLAFC Merozoite surface protein 1 precursor ... 33 0.45
sp|P08569|MSP1_PLAFM Merozoite surface protein 1 precursor ... 33 0.76
sp|P50495|MSP1_PLAFP Merozoite surface protein 1 precursor ... 33 0.76
sp|P13819|MSP1_PLAFF Merozoite surface protein 1 precursor ... 33 0.76
sp|P14712|PHYA_ARATH Phytochrome A 32 1.00
sp|P34379|YLM5_CAEEL Hypothetical protein D2007.5 in chromo... 32 1.3
>sp|Q04746|YMV5_YEAST Hypothetical 58.4 kDa protein in NCA1-HMS1 intergenic region
Length = 504
Score = 35.8 bits (81), Expect = 0.090
Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Frame = +3
Query: 48 NRIIKDFDDVSYFK-EIIEIMRKCARNFESDALEKIQEFVRNAPVNEEVVSSEPTE---- 212
NRII + +D+S+F+ ++ +++ + + E +EK + + ++S E
Sbjct: 211 NRIILE-NDLSFFRNKVNDVLYETSEQLEVQIIEKNSQLMNEVDTVHHIMSDLADELAKN 269
Query: 213 -------SMEVDEIDEFESFTSKYPDLKKIRCKNPKSIGTELHNYLQKLKEKILNGELDK 371
++ D ++ + D+K+ +N K + TEL N+ LK+++ D
Sbjct: 270 DIKSKINDLKDDSLNNLQDLVEMSNDVKEYYSRNNKLVNTELENFSMGLKKQLGGMSKDL 329
Query: 372 NE 377
+E
Sbjct: 330 SE 331
>sp|P19598|MSP1_PLAF3 Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (P190)
Length = 1682
Score = 35.0 bits (79), Expect = 0.15
Identities = 34/136 (25%), Positives = 63/136 (46%)
Frame = +3
Query: 69 DDVSYFKEIIEIMRKCARNFESDALEKIQEFVRNAPVNEEVVSSEPTESMEVDEIDEFES 248
+D+ + +E I K ++ D LE I++ ++ +E SS PT + DE +
Sbjct: 1399 NDIKFAQEGISYYEKVLAKYKDD-LESIKKVIKE---EKEFPSSPPTTPPSPAKTDEQKK 1454
Query: 249 FTSKYPDLKKIRCKNPKSIGTELHNYLQKLKEKILNGELDKNEELPKIRSAIEWILNDDE 428
+ P L I ++ ++ +YL LK KI + ++K+E KI + DD+
Sbjct: 1455 ESKFLPFLTNIETLY-NNLVNKIDDYLINLKAKINDCNVEKDEAHVKITKLSDLKAIDDK 1513
Query: 429 WSSQCLDLWWDYYEIE 476
+DL+ + Y+ E
Sbjct: 1514 -----IDLFKNPYDFE 1524
>sp|O29979|SYE_ARCFU Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
Length = 551
Score = 34.7 bits (78), Expect = 0.20
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 18/144 (12%)
Frame = +3
Query: 87 KEIIEIMRKCARNFESDALEKIQEFVRNAPVNEEVVSSEPTESMEVDEIDEFESFTSKYP 266
KE++E++++C FE+ + E VR + + + SE +E ++ E E
Sbjct: 40 KEVLELVKECITEFEA-----LSEEVRKELIKKYSMDSEAKRELETKKLPELEGAEKGKV 94
Query: 267 DLKKIRCKN-PKSIGTELHNYLQKLKEKILNG-------ELDKNEELPKIRSAIEWILND 422
++ N P ++G+ + K+ G + D + P I A EW L D
Sbjct: 95 VMRFAPNPNGPPTLGSARGIIVNGEYAKMYEGKYIIRFDDTDPRTKRPMI-EAYEWYLED 153
Query: 423 DEW----------SSQCLDLWWDY 464
EW +S+ + +++DY
Sbjct: 154 IEWLGYKPDEVIYASRRIPIYYDY 177
>sp|P03198|DPOL_EBV DNA polymerase
Length = 1015
Score = 34.3 bits (77), Expect = 0.26
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 15/144 (10%)
Frame = +3
Query: 27 CMIELTLNRIIKDFDDVSYFKEIIEIMRKCARNFESDALEKIQEFV-RNAPVNE--EVVS 197
C++ +T R + D + +E++RK A F ++ + V +A V E ++S
Sbjct: 801 CLMLITKKRYVGVLTDGKTLMKGVELVRKTACKFVQTRCRRVLDLVLADARVKEAASLLS 860
Query: 198 SEP-----TESMEVDEIDEFESFTSKYPDLKKIRCKNPK-SIGTELHNYLQKLKEK---- 347
P T+ + V + + Y DL++ R + TEL L K
Sbjct: 861 HRPFQESFTQGLPVGFLPVIDILNQAYTDLREGRVPMGELCFSTELSRKLSAYKSTQMPH 920
Query: 348 --ILNGELDKNEELPKIRSAIEWI 413
+ +++NEELP+I I+++
Sbjct: 921 LAVYQKFVERNEELPQIHDRIQYV 944
>sp|P04934|MSP1_PLAFC Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (P195)
Length = 1726
Score = 33.5 bits (75), Expect = 0.45
Identities = 33/136 (24%), Positives = 63/136 (46%)
Frame = +3
Query: 69 DDVSYFKEIIEIMRKCARNFESDALEKIQEFVRNAPVNEEVVSSEPTESMEVDEIDEFES 248
+D+ + +E I K ++ D LE I++ ++ E+ SS PT + DE +
Sbjct: 1442 NDIKFAQEGISYYEKVLAKYKDD-LESIKKVIKEE--KEKFPSSPPTTPPSPAKTDEQKK 1498
Query: 249 FTSKYPDLKKIRCKNPKSIGTELHNYLQKLKEKILNGELDKNEELPKIRSAIEWILNDDE 428
+ P L I ++ ++ +YL LK KI + ++K+E KI + DD+
Sbjct: 1499 ESKFLPFLTNIETLY-NNLVNKIDDYLINLKAKINDCNVEKDEAHVKITKLSDLKAIDDK 1557
Query: 429 WSSQCLDLWWDYYEIE 476
+DL+ ++ + E
Sbjct: 1558 -----IDLFKNHNDFE 1568
>sp|P08569|MSP1_PLAFM Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (P190)
Length = 1701
Score = 32.7 bits (73), Expect = 0.76
Identities = 30/120 (25%), Positives = 55/120 (45%)
Frame = +3
Query: 69 DDVSYFKEIIEIMRKCARNFESDALEKIQEFVRNAPVNEEVVSSEPTESMEVDEIDEFES 248
+D+ + +E I K ++ D LE I++ ++ E+ SS PT + DE +
Sbjct: 1417 NDIKFAQEGISYYEKVLAKYKDD-LESIKKVIKEE--KEKFPSSPPTTPPSPAKTDEQKK 1473
Query: 249 FTSKYPDLKKIRCKNPKSIGTELHNYLQKLKEKILNGELDKNEELPKIRSAIEWILNDDE 428
+ P L I ++ ++ +YL LK KI + ++K+E KI + DD+
Sbjct: 1474 ESKFLPFLTNIETLY-NNLVNKIDDYLINLKAKINDCNVEKDEAHVKITKLSDLKAIDDK 1532
>sp|P50495|MSP1_PLAFP Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (GP195)
Length = 1726
Score = 32.7 bits (73), Expect = 0.76
Identities = 30/120 (25%), Positives = 55/120 (45%)
Frame = +3
Query: 69 DDVSYFKEIIEIMRKCARNFESDALEKIQEFVRNAPVNEEVVSSEPTESMEVDEIDEFES 248
+D+ + +E I K ++ D LE I++ ++ E+ SS PT + DE +
Sbjct: 1442 NDIKFAQEGISYYEKVLAKYKDD-LESIKKVIKEE--KEKFPSSPPTTPPSPAKTDEQKK 1498
Query: 249 FTSKYPDLKKIRCKNPKSIGTELHNYLQKLKEKILNGELDKNEELPKIRSAIEWILNDDE 428
+ P L I ++ ++ +YL LK KI + ++K+E KI + DD+
Sbjct: 1499 ESKFLPFLTNIETLY-NNLVNKIDDYLINLKAKINDCNVEKDEAHVKITKLSDLKAIDDK 1557
>sp|P13819|MSP1_PLAFF Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA)
Length = 1701
Score = 32.7 bits (73), Expect = 0.76
Identities = 30/120 (25%), Positives = 55/120 (45%)
Frame = +3
Query: 69 DDVSYFKEIIEIMRKCARNFESDALEKIQEFVRNAPVNEEVVSSEPTESMEVDEIDEFES 248
+D+ + +E I K ++ D LE I++ ++ E+ SS PT + DE +
Sbjct: 1417 NDIKFAQEGISYYEKVLAKYKDD-LESIKKVIKEE--KEKFPSSPPTTPPSPAKTDEQKK 1473
Query: 249 FTSKYPDLKKIRCKNPKSIGTELHNYLQKLKEKILNGELDKNEELPKIRSAIEWILNDDE 428
+ P L I ++ ++ +YL LK KI + ++K+E KI + DD+
Sbjct: 1474 ESKFLPFLTNIETLY-NNLVNKIDDYLINLKAKINDCNVEKDEAHVKITKLSDLKAIDDK 1532
>sp|P14712|PHYA_ARATH Phytochrome A
Length = 1122
Score = 32.3 bits (72), Expect = 1.00
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Frame = +3
Query: 78 SYFKEIIEIMRKCA---RNFESDALEKIQEFVRNA-------PVNEEVVSSEPTESMEVD 227
S FK +E+++ + +++E DA+ +Q +RNA VN +V+ S+ +++D
Sbjct: 552 SSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSETTDVNTKVIYSK-LNDLKID 610
Query: 228 EIDEFESFTSK 260
I E E+ TS+
Sbjct: 611 GIQELEAVTSE 621
>sp|P34379|YLM5_CAEEL Hypothetical protein D2007.5 in chromosome III
Length = 443
Score = 32.0 bits (71), Expect = 1.3
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Frame = +3
Query: 141 LEKIQEFVRNAPVNEEVVSSEPTESMEVDEIDEFESFTSKYPDLKKIRCKNPKSIGTELH 320
+EK+ E R A ++E V + E + +D ++ E + L S+G EL
Sbjct: 334 IEKVAESFRAAKIDEVVFEEDEDEELPLDSMELSEDSFVHFNQLSDFG--GAPSLGNELG 391
Query: 321 NYLQKLK---EKILNGE-----LDKNEELPKIRS 398
+YL++LK + +G+ +D EL KI S
Sbjct: 392 DYLKQLKTAPDMTESGDIDICNMDLKTELEKISS 425
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,105,139
Number of Sequences: 369166
Number of extensions: 1052098
Number of successful extensions: 3415
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3413
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4895780500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)