Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_N14
(264 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8D2Z1|MURE_WIGBR UDP-N-acetylmuramoylalanyl-D-glutamate... 33 0.20
sp|Q8K9W5|PTA_BUCAP Phosphate acetyltransferase (Phosphotra... 31 0.76
sp|Q63912|OMGP_MOUSE Oligodendrocyte-myelin glycoprotein pr... 31 0.99
sp|P21422|RPOC_PLAFA DNA-directed RNA polymerase beta' chain 30 1.7
sp|P57392|GLPF_BUCAI Glycerol uptake facilitator protein 28 6.4
sp|Q6F0E4|TILS_MESFL tRNA(Ile)-lysidine synthase (tRNA(Ile)... 28 8.4
>sp|Q8D2Z1|MURE_WIGBR UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
(UDP-N-acetylmuramyl-tripeptide synthetase)
(Meso-diaminopimelate-adding enzyme)
(UDP-MurNAc-tripeptide synthetase)
Length = 496
Score = 33.1 bits (74), Expect = 0.20
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 3 DIFVIVLFICNISRLNNHNNNFFFYPLQSIRCILFFQYMQIHRNALIFFFSKSNTIYFSN 182
DIF+ + CN H NF F +++ I+ + I ++ +I+F IYF N
Sbjct: 38 DIFIALYGNCN------HGKNFIFEAIKNGSSIILIETKNILKHGIIYFIKNIPIIYFYN 91
Query: 183 HN 188
N
Sbjct: 92 LN 93
>sp|Q8K9W5|PTA_BUCAP Phosphate acetyltransferase (Phosphotransacetylase)
Length = 709
Score = 31.2 bits (69), Expect = 0.76
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -1
Query: 249 LQRYSYVINSTSVEF--ELLKTDYDLKNKWYLI*KKKRLMRFYVFAYTEKKVCNGLIAMD 76
LQ++++ IN + F +LL+ NK +LI KK+ FY Y+ K+ C L +
Sbjct: 339 LQKFNFNINVQNKYFINKLLEYTSSFFNKNHLISLKKKTTNFYKKTYSPKEFCYRLKILS 398
Query: 75 RKK 67
+ K
Sbjct: 399 KSK 401
>sp|Q63912|OMGP_MOUSE Oligodendrocyte-myelin glycoprotein precursor
Length = 440
Score = 30.8 bits (68), Expect = 0.99
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 27 ICNISRLNNHNNNFFFYPLQSIRCILFFQYMQIHRN 134
+ N++ L HNN F F P QS +L Q + +H N
Sbjct: 190 LTNLTHLYLHNNKFTFIPEQSFDQLLQLQEITLHNN 225
>sp|P21422|RPOC_PLAFA DNA-directed RNA polymerase beta' chain
Length = 575
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 18 VLFICNISRLNNHNNNFFFYPLQSIRCILFFQYMQIH 128
+LFI N+ + NNN FY L SI I+ YM I+
Sbjct: 539 ILFIFNLVWIKYINNNNIFYILTSINRIIINLYMYIY 575
>sp|P57392|GLPF_BUCAI Glycerol uptake facilitator protein
Length = 263
Score = 28.1 bits (61), Expect = 6.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 3 DIFVIVLFICNISRLNNHNNNFFFY 77
+IF LFI + NN N+N+F Y
Sbjct: 154 EIFSTALFILIVLEFNNRNSNYFLY 178
>sp|Q6F0E4|TILS_MESFL tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase)
Length = 398
Score = 27.7 bits (60), Expect = 8.4
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -1
Query: 246 QRYSYVINSTSVEFELLKTDYDLKNKWYLI*K----KKRLMRFYVFAYTEKKVCN 94
+ Y YVI + + ++L + K YLI K K R+++ V++ KK+ N
Sbjct: 341 ENYPYVITNDFLTYKLNTYTFGKKTNRYLIDKKIRYKNRMLKAVVYSTKTKKILN 395
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,340,107
Number of Sequences: 369166
Number of extensions: 366630
Number of successful extensions: 773
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1671570150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)