Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_N13
(388 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1... 95 4e-20
sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1... 88 7e-18
sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precur... 86 2e-17
sp|Q7ZZN9|CRVP_TRIJE Cysteine-rich venom protein precursor ... 86 3e-17
sp|P54108|CRIS3_HUMAN Cysteine-rich secretory protein 3 pre... 84 8e-17
sp|Q8JI38|CRVP_LATSE Latisemin precursor 84 8e-17
sp|Q03401|CRIS1_MOUSE Cysteine-rich secretory protein 1 pre... 84 1e-16
sp|Q7ZT98|CRVP_OPHHA Ophanin precursor (Opharin) 84 1e-16
sp|P12020|CRIS1_RAT Cysteine-rich secretory protein 1 precu... 83 2e-16
sp|Q8JGT9|CRVP_RHATT Tigrin precursor 82 3e-16
>sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1 precursor (GliPR 1) (RTVP-1
protein)
Length = 266
Score = 95.1 bits (235), Expect = 4e-20
Identities = 46/99 (46%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Frame = +1
Query: 4 AVKLWFNEHRDFSFFNGYCGGICGHYTQVVWAKSYAIGCASAECRQ-------KTGAHFK 162
A+ W++E +D+ F C +CGHYTQVVWA SY +GCA C + GAH
Sbjct: 113 AITNWYDEIQDYDFKTRICKKVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAH-- 170
Query: 163 YIFYCNYGPSGNYIGFKPYLAGETCSRCPTGSTCNDGLC 279
F CNYGP GNY + PY G TCS CP C D LC
Sbjct: 171 --FICNYGPGGNYPTW-PYKRGATCSACPNNDKCLDNLC 206
>sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1 precursor (GliPR 1)
Length = 255
Score = 87.8 bits (216), Expect = 7e-18
Identities = 42/92 (45%), Positives = 53/92 (57%)
Frame = +1
Query: 4 AVKLWFNEHRDFSFFNGYCGGICGHYTQVVWAKSYAIGCASAECRQKTGAHFKYIFYCNY 183
A+ W+ E + + F C +CGHYTQVVWA SY +GCA C GA+ F C+Y
Sbjct: 111 AISAWYEEIKHYDFSTRKCRHVCGHYTQVVWADSYKLGCAVQLC--PNGAN----FICDY 164
Query: 184 GPSGNYIGFKPYLAGETCSRCPTGSTCNDGLC 279
GP+GNY + PY G TCS CP C + LC
Sbjct: 165 GPAGNYPTW-PYKQGATCSDCPKDDKCLNSLC 195
>sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precursor (Stecrisp)
Length = 233
Score = 86.3 bits (212), Expect = 2e-17
Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Frame = +1
Query: 7 VKLWFNEHRDFSFFNGYC--GGICGHYTQVVWAKSYAIGCASAECRQKTGAHFKYIFYCN 180
+ W +E++DF + G + GHYTQ+VW KSY IGCA+A C + + Y F C
Sbjct: 102 IHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSYRIGCAAAYC---PSSPYSYFFVCQ 158
Query: 181 YGPSGNYIG--FKPYLAGETCSRCPTGSTCNDGLCT 282
Y P+GN+IG PY +G C CP S C++GLCT
Sbjct: 159 YCPAGNFIGKTATPYTSGTPCGDCP--SDCDNGLCT 192
>sp|Q7ZZN9|CRVP_TRIJE Cysteine-rich venom protein precursor (TJ-CRVP)
Length = 240
Score = 85.5 bits (210), Expect = 3e-17
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Frame = +1
Query: 7 VKLWFNEHRDFSFFNGYC--GGICGHYTQVVWAKSYAIGCASAECRQKTGAHFKYIFYCN 180
+ W E++DF + G + GHYTQ+VW KSY IGCA+A C A + Y + C
Sbjct: 109 IHAWHGEYKDFKYGVGAVPSDAVVGHYTQIVWYKSYRIGCAAAYC---PSAEYSYFYVCQ 165
Query: 181 YGPSGNYIG--FKPYLAGETCSRCPTGSTCNDGLCT 282
Y P+GN IG PY +G C CP S C++GLCT
Sbjct: 166 YCPAGNMIGKTATPYTSGPPCGDCP--SDCDNGLCT 199
>sp|P54108|CRIS3_HUMAN Cysteine-rich secretory protein 3 precursor (CRISP-3) (SGP28
protein)
Length = 245
Score = 84.3 bits (207), Expect = 8e-17
Identities = 43/99 (43%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Frame = +1
Query: 1 RAVKLWFNEHRDFSFFNG--YCGGICGHYTQVVWAKSYAIGCASAEC-RQKTGAHFKYIF 171
+A++ WF+E+ DF F G + GHYTQVVW SY +GC +A C QK KY +
Sbjct: 111 QAIQSWFDEYNDFDFGVGPKTPNAVVGHYTQVVWYSSYLVGCGNAYCPNQKV---LKYYY 167
Query: 172 YCNYGPSGNYIG--FKPYLAGETCSRCPTGSTCNDGLCT 282
C Y P+GN+ + PY G C+ CP C+DGLCT
Sbjct: 168 VCQYCPAGNWANRLYVPYEQGAPCASCP--DNCDDGLCT 204
>sp|Q8JI38|CRVP_LATSE Latisemin precursor
Length = 238
Score = 84.3 bits (207), Expect = 8e-17
Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = +1
Query: 1 RAVKLWFNEHRDFSFFNGYC--GGICGHYTQVVWAKSYAIGCASAECRQKTGAHFKYIFY 174
R ++ W++E+++F + G G + GHYTQ+VW KS+ +GCA+A C KY++
Sbjct: 107 RVIQSWYDENKNFIYDVGANPPGSVIGHYTQIVWYKSHLLGCAAARCSSS-----KYLYV 161
Query: 175 CNYGPSGNYIG--FKPYLAGETCSRCPTGSTCNDGLCT 282
C Y P+GN IG PY +G C CP S C +GLCT
Sbjct: 162 CQYCPAGNIIGSIATPYKSGPPCGDCP--SACVNGLCT 197
>sp|Q03401|CRIS1_MOUSE Cysteine-rich secretory protein 1 precursor (CRISP-1) (Acidic
epididymal glycoprotein 1) (Sperm-coating glycoprotein
1) (SCP 1)
Length = 244
Score = 84.0 bits (206), Expect = 1e-16
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Frame = +1
Query: 4 AVKLWFNEHRDFSFFNG--YCGGICGHYTQVVWAKSYAIGCASAECRQKTGAHFKYIFYC 177
A++ W+NE++D ++ G + GHYTQVVW ++ + C AEC + +Y + C
Sbjct: 112 AIQGWYNEYKDLTYDVGPKQPDSVVGHYTQVVWNSTFQVACGVAECPKNP---LRYYYVC 168
Query: 178 NYGPSGNYIG--FKPYLAGETCSRCPTGSTCNDGLCT 282
+Y P GNY G + PY AGE C+ CP C DGLCT
Sbjct: 169 HYCPVGNYQGRLYTPYTAGEPCASCP--DHCEDGLCT 203
>sp|Q7ZT98|CRVP_OPHHA Ophanin precursor (Opharin)
Length = 239
Score = 83.6 bits (205), Expect = 1e-16
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Frame = +1
Query: 7 VKLWFNEHRDFSFFNGYC--GGICGHYTQVVWAKSYAIGCASAECRQKTGAHFKYIFYCN 180
++LW +E+++F + G G + GHYTQ+VW K+Y IGCA C + + Y + C
Sbjct: 108 IQLWHDEYKNFVYGVGANPPGSVTGHYTQIVWYKTYRIGCAVNYC---PSSEYSYFYVCQ 164
Query: 181 YGPSGNYIG--FKPYLAGETCSRCPTGSTCNDGL----CTYFN*FNLTNSIFDQQS 330
Y PSGN G PY +G TC CP S C++GL CT +N + +S+ Q S
Sbjct: 165 YCPSGNMRGSTATPYKSGPTCGDCP--SACDNGLCTNPCTLYNEYTNCDSLVKQSS 218
>sp|P12020|CRIS1_RAT Cysteine-rich secretory protein 1 precursor (Sperm-coating
glycoprotein) (SCP) (Acidic epididymal glycoprotein)
(Protein D) (Protein E) (Protein IV) (Sialoprotein) (32
kDa epididymal protein)
Length = 246
Score = 83.2 bits (204), Expect = 2e-16
Identities = 41/93 (44%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Frame = +1
Query: 16 WFNEHRDFSFFNG--YCGGICGHYTQVVWAKSYAIGCASAECRQKTGAHFKYIFYCNYGP 189
W++E DF F G G GHYTQVVW ++ + C AEC + KY + C+Y P
Sbjct: 118 WYDESLDFVFGFGPKKVGVKVGHYTQVVWNSTFLVACGVAECPDQP---LKYFYVCHYCP 174
Query: 190 SGNYIG--FKPYLAGETCSRCPTGSTCNDGLCT 282
GNY+G + PY GE C CP C DGLCT
Sbjct: 175 GGNYVGRLYSPYTEGEPCDSCP--GNCEDGLCT 205
>sp|Q8JGT9|CRVP_RHATT Tigrin precursor
Length = 237
Score = 82.4 bits (202), Expect = 3e-16
Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 4/93 (4%)
Frame = +1
Query: 16 WFNEHRDFSFFNGYC--GGICGHYTQVVWAKSYAIGCASAECRQKTGAHFKYIFYCNYGP 189
W++E+R+F + G + GHYTQ+VW KSY +GCA+A C + + Y + C Y P
Sbjct: 111 WYDEYRNFVYGVGANPPDSVTGHYTQIVWYKSYLVGCAAAYC---PSSLYNYFYVCQYCP 167
Query: 190 SGNYIG--FKPYLAGETCSRCPTGSTCNDGLCT 282
+GN G PY +G TC+ CP S C++GLCT
Sbjct: 168 AGNIQGSTSTPYASGPTCADCP--SNCDNGLCT 198
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,448,872
Number of Sequences: 369166
Number of extensions: 821574
Number of successful extensions: 2284
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2180
length of database: 68,354,980
effective HSP length: 95
effective length of database: 50,805,155
effective search space used: 1676570115
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)