Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_N09
(367 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O88878|Z20D2_MOUSE Zinc finger A20 domain containing pro... 97 9e-21
sp|O76080|Z20D2_HUMAN Zinc finger A20 domain containing pro... 97 9e-21
sp|Q9SJM6|ZF2N2_ARATH Zinc finger A20 and AN1 domains conta... 86 2e-17
sp|Q9LLX1|ISAP1_ORYSA Multiple stress-responsive zinc-finge... 86 3e-17
sp|Q6NNI8|ZF2N1_ARATH Zinc finger A20 and AN1 domains conta... 82 5e-16
sp|Q9SZ69|ZF2N3_ARATH Zinc finger A20 and AN1 domains conta... 80 2e-15
sp|Q8BFR6|ZFAN1_MOUSE AN1-type zinc finger protein 1 33 0.21
sp|Q8TCF1|ZFAN1_HUMAN AN1-type zinc finger protein 1 31 1.0
sp|Q74IZ0|RECO_LACJO DNA repair protein recO (Recombination... 30 1.3
sp|Q81LT9|RECO_BACAN DNA repair protein recO (Recombination... 30 1.7
>sp|O88878|Z20D2_MOUSE Zinc finger A20 domain containing protein 2 (Zinc finger protein
216)
Length = 213
Score = 97.4 bits (241), Expect = 9e-21
Identities = 40/64 (62%), Positives = 49/64 (76%)
Frame = +1
Query: 40 KKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKANPRIVSNK 219
KKNRC +CRKKVGLTGF CRCG +FC HRYSD H+C +DYK +A IRK NP +V+ K
Sbjct: 150 KKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEK 209
Query: 220 VAKI 231
+ +I
Sbjct: 210 IQRI 213
>sp|O76080|Z20D2_HUMAN Zinc finger A20 domain containing protein 2 (Zinc finger protein
216)
Length = 213
Score = 97.4 bits (241), Expect = 9e-21
Identities = 40/64 (62%), Positives = 49/64 (76%)
Frame = +1
Query: 40 KKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKANPRIVSNK 219
KKNRC +CRKKVGLTGF CRCG +FC HRYSD H+C +DYK +A IRK NP +V+ K
Sbjct: 150 KKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEK 209
Query: 220 VAKI 231
+ +I
Sbjct: 210 IQRI 213
>sp|Q9SJM6|ZF2N2_ARATH Zinc finger A20 and AN1 domains containing protein At2g36320
Length = 161
Score = 86.3 bits (212), Expect = 2e-17
Identities = 35/64 (54%), Positives = 45/64 (70%)
Frame = +1
Query: 40 KKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKANPRIVSNK 219
+ NRC +CRK+VGLTGF CRCG FC +HRY + H CTFD+K I KANP +++ K
Sbjct: 98 RPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPLVIAAK 157
Query: 220 VAKI 231
+ KI
Sbjct: 158 LQKI 161
>sp|Q9LLX1|ISAP1_ORYSA Multiple stress-responsive zinc-finger protein ISAP1
(Stress-associated protein 1) (OsISAP1)
Length = 164
Score = 85.9 bits (211), Expect = 3e-17
Identities = 38/70 (54%), Positives = 49/70 (70%)
Frame = +1
Query: 19 VASASSVKKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKAN 198
VA S+V NRC CRK+VGLTGF CRCG +FC HRYSD H C++DYK A +AI + N
Sbjct: 96 VAKTSAV--NRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDN 153
Query: 199 PRIVSNKVAK 228
P + + K+ +
Sbjct: 154 PVVRAAKIVR 163
>sp|Q6NNI8|ZF2N1_ARATH Zinc finger A20 and AN1 domains containing protein At1g12440
Length = 168
Score = 81.6 bits (200), Expect = 5e-16
Identities = 35/61 (57%), Positives = 42/61 (68%)
Frame = +1
Query: 49 RCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKANPRIVSNKVAK 228
RC C KKVG+TGF CRCG FC HRY +SH C FD+K A AI KANP + ++KV +
Sbjct: 108 RCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAREAIAKANPVVKADKVDR 167
Query: 229 I 231
I
Sbjct: 168 I 168
>sp|Q9SZ69|ZF2N3_ARATH Zinc finger A20 and AN1 domains containing protein At4g12040
Length = 175
Score = 79.7 bits (195), Expect = 2e-15
Identities = 32/62 (51%), Positives = 43/62 (69%)
Frame = +1
Query: 46 NRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKANPRIVSNKVA 225
NRC C KKVG+ GF C+CG FC +HRY + H C+FD+K +AI KANP + ++KV
Sbjct: 114 NRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQ 173
Query: 226 KI 231
+I
Sbjct: 174 RI 175
>sp|Q8BFR6|ZFAN1_MOUSE AN1-type zinc finger protein 1
Length = 268
Score = 33.1 bits (74), Expect = 0.21
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 55 QLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCT 153
Q CR++ L C G+FC HR DSH C+
Sbjct: 13 QHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCS 45
>sp|Q8TCF1|ZFAN1_HUMAN AN1-type zinc finger protein 1
Length = 268
Score = 30.8 bits (68), Expect = 1.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 52 CQL--CRKKVGLTGFACRCGGMFCSAHRYSDSHSC 150
CQ+ CR++ L C G+FC HR +SH C
Sbjct: 10 CQVEHCRQRDFLPFVCDDCSGIFCLEHRSRESHGC 44
>sp|Q74IZ0|RECO_LACJO DNA repair protein recO (Recombination protein O)
Length = 250
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 46 NRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDA 174
+RC +C K G ++ GG+ CS H S S D KV A
Sbjct: 154 DRCLICGKVQGKFDYSLELGGIICSDHFNSVSQRMHLDPKVVA 196
>sp|Q81LT9|RECO_BACAN DNA repair protein recO (Recombination protein O)
sp|Q634P2|RECO_BACCZ DNA repair protein recO (Recombination protein O)
sp|Q6HDM2|RECO_BACHK DNA repair protein recO (Recombination protein O)
Length = 248
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +1
Query: 52 CQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRK 192
C +C ++ F+ R GG CS H D Y++ A+ K
Sbjct: 152 CAICHQETDFVAFSVREGGFLCSRHAEQD------QYRIPVGEAVHK 192
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,204,242
Number of Sequences: 369166
Number of extensions: 608079
Number of successful extensions: 1631
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1630
length of database: 68,354,980
effective HSP length: 88
effective length of database: 52,098,300
effective search space used: 1719243900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)