Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_N05
(905 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6BQ20|ATG13_DEBHA Autophagy-related protein 13 35 0.38
sp|Q3UEN2|FA35A_MOUSE Protein FAM35A 34 0.49
sp|P11433|CDC24_YEAST Cell division control protein 24 (Cal... 34 0.49
sp|Q11103|YL18_CAEEL Hypothetical protein C02F12.8 in chrom... 34 0.64
sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lys... 34 0.64
sp|P56095|AP1_KLULA AP-1-like transcription factor 33 0.84
sp|P47025|YJL2_YEAST Hypothetical 80.0 kDa Trp-Asp repeats ... 33 1.1
sp|P04933|MSP1_PLAFW Merozoite surface protein 1 precursor ... 33 1.4
sp|Q01055|V120_SHV21 Capsid assembly protein 63 33 1.4
sp|P04932|MSP1_PLAFK Merozoite surface protein 1 precursor ... 33 1.4
>sp|Q6BQ20|ATG13_DEBHA Autophagy-related protein 13
Length = 837
Score = 34.7 bits (78), Expect = 0.38
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 6/133 (4%)
Frame = +3
Query: 453 NLEYSPTTAESIFSEHSSKRPHDDINEVCMSQIDYRLDEPAFKKPWPEKQTSDSYITPWS 632
N +Y+ T S+ S H S HD+ N + S D + P F + + + T
Sbjct: 469 NNQYNSTFPRSVSSSHGSNLAHDNDNLLGFSNPDNTSNTPRFSSSFGSRASRRFSNTSGR 528
Query: 633 ETSDVNFRNNSNQSFSTKDQEYSMSLRIQDL---SSTSNEVEDVHNRDDILLSGINFN-- 797
++S + N +T S + L + V + ++ D+ SG N N
Sbjct: 529 QSSLPSGNMNDTSLLATSAGLASSDAPMSGLYIDDDIGDFVRMIDSKSDLRFSGYNSNND 588
Query: 798 -KTSYNGNLNKEM 833
K SYN N ++
Sbjct: 589 SKISYNQGSNSQI 601
>sp|Q3UEN2|FA35A_MOUSE Protein FAM35A
Length = 898
Score = 34.3 bits (77), Expect = 0.49
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Frame = +3
Query: 429 DCRNELAENLEYSPTTAESI-FSEHSSKRPHDDINEVCMSQIDYRLDEPAFKKPWPEKQT 605
DC N+ N+E PT ++ + +E +P D E ++ F PE ++
Sbjct: 252 DCINKSTVNMEAEPTGSQGVRRTEGDFSKPGGDFEEESENEQSQVYSLELFSPVCPESES 311
Query: 606 SDSYITPWSETSDVNFRNNSNQSFSTKDQEYSMSLRIQDLSSTSN 740
S S+I P N N S+Q + ++ + ST+N
Sbjct: 312 SHSHINPGK-----NLENTSSQELFSNEENLPPNELCSSHPSTAN 351
>sp|P11433|CDC24_YEAST Cell division control protein 24 (Calcium regulatory protein)
Length = 854
Score = 34.3 bits (77), Expect = 0.49
Identities = 43/198 (21%), Positives = 86/198 (43%), Gaps = 13/198 (6%)
Frame = +3
Query: 270 PQNYPLKCNLKCPTFNEDAYFQIEFSDIDKR-------KQKSEENLNSQY-ARDESEMPL 425
PQN N+ + E F ++F + + R +Q + N Q+ AR S
Sbjct: 627 PQNNR-SLNITWESIKEQGNFLLKFKNEETRDNWSSCLQQLIHDLKNEQFKARHHSSTST 685
Query: 426 TDCRNELAENLEYSPTTAESIFSEHSSKRPHDDINEVCMSQIDYRLDEPAFKKPWPEKQT 605
T + + + SPTT + + H+S++ HD + S + D P+++T
Sbjct: 686 TSSTAKSSSMM--SPTTTMNTPNHHNSRQTHDSMASFSSSHMKRVSD------VLPKRRT 737
Query: 606 SDSYITPWSETSDVNFRNNSNQSFSTKDQEYSMSLRIQDLSSTSNE-----VEDVHNRDD 770
+ S ++ NF+N+ +S + +S +++S+E VE V N DD
Sbjct: 738 TSSSFESEIKSISENFKNSIPESSIL----FRISYNNNSNNTSSSEIFTLLVEKVWNFDD 793
Query: 771 ILLSGINFNKTSYNGNLN 824
++++ + ++N N++
Sbjct: 794 LIMAINSKISNTHNNNIS 811
>sp|Q11103|YL18_CAEEL Hypothetical protein C02F12.8 in chromosome X
Length = 687
Score = 33.9 bits (76), Expect = 0.64
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Frame = +3
Query: 348 DIDKRKQKSEENLNSQYARDESEMPLTDCRNELAENLEYSPTTAESIFSEHSSKRPHDDI 527
D+D +S N Y+ SEMP D +++ ENL+ S T E EHS +I
Sbjct: 337 DLDSVDTESVANEPEPYSSTMSEMPPLDDVDDIMENLDLSKTLIEPETLEHSDNMSVVEI 396
Query: 528 NEVCMSQI---DYRLDEPAFKKPWPEKQTSDSYITPWSETSD 644
+S++ +D+ ++ TS S I + +TSD
Sbjct: 397 KSEPVSEMTTDSLIVDD--------DRDTSISEIIKYLDTSD 430
>sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lysis A (Tyrosine-protein kinase
1)
Length = 1584
Score = 33.9 bits (76), Expect = 0.64
Identities = 20/86 (23%), Positives = 37/86 (43%)
Frame = +3
Query: 648 NFRNNSNQSFSTKDQEYSMSLRIQDLSSTSNEVEDVHNRDDILLSGINFNKTSYNGNLNK 827
N NNSN + + + + +I ++TS ++N +DI + N N + N N N
Sbjct: 405 NNNNNSNNNNNNNNNNIIGNGKITTTTTTSTSPSSINNNEDISSNNNNNNNNNNNNNNNN 464
Query: 828 EMFNFQHELEFTPGVESGNSSNQSFS 905
N + S N++N + +
Sbjct: 465 NNNNNNNNNNNNNNSNSSNTNNNNIN 490
>sp|P56095|AP1_KLULA AP-1-like transcription factor
Length = 583
Score = 33.5 bits (75), Expect = 0.84
Identities = 64/296 (21%), Positives = 119/296 (40%), Gaps = 14/296 (4%)
Frame = +3
Query: 42 TKFIRNKGVNVIENFKLKN--VARKLLDDGWNYLIFELEKPVPYYPNEVFLIIYEKVFEC 215
TKF+RN+ N++ K N + +K +YL + + + P+ F K
Sbjct: 97 TKFLRNQVTNLLSELKRYNPELPKKRDSILLDYLAKQRKASIDSNPD--FSAAANKAAN- 153
Query: 216 ITKNTEKEVHYSEFKFKFPQNYPLKCNLKCPTFNEDAYF-QIEFSDIDKRKQKSEENLNS 392
+K++ + S F+F+FP K P+ + D+ S +D KS + N
Sbjct: 154 -SKDSSTAISSSNFQFEFPWKMDPS---KIPSPSSDSTSPSASTSILDNANNKSVSSTNL 209
Query: 393 QYAR----DESEMP-----LTDCRNELAENLEYSPTTAESIFSEHSSKRPHDDINEVC-- 539
++R + S P L+ ++ NL + + S F S + + ++ C
Sbjct: 210 NHSRSSISNSSSSPSNVNGLSSRKHSNTLNLYQTQSNVTSEFDFDS--QFDESVSSFCSK 267
Query: 540 MSQIDYRLDEPAFKKPWPEKQTSDSYITPWSETSDVNFRNNSNQSFSTKDQEYSMSLRIQ 719
+S P K P S S + S+VN N++N ++KD S S +
Sbjct: 268 LSMACGTKSNP-IPKASPVSTPSSSDLLKPKSNSNVNITNHNNNKINSKD--LSSSAPLH 324
Query: 720 DLSSTSNEVEDVHNRDDILLSGINFNKTSYNGNLNKEMFNFQHELEFTPGVESGNS 887
D +S S ++N D + N S +++K+ + H G+++ +S
Sbjct: 325 DSASAS----ALNNHDSV-------NAVSNQFSVDKQYNDSSHSQATPNGLDNDSS 369
>sp|P47025|YJL2_YEAST Hypothetical 80.0 kDa Trp-Asp repeats containing protein in
ASF1-CCT7 intergenic region
Length = 714
Score = 33.1 bits (74), Expect = 1.1
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 12/151 (7%)
Frame = +3
Query: 477 AESIFSEHSSKRPHDDI-------NEVCMSQIDYRLDEPAFKKPWPEKQTSDS---YITP 626
A + F + SK D+ N+ C + Y D+ + P E SD+ +T
Sbjct: 71 ASNTFEDIYSKTRRGDVFRNKFTDNKTCFRMLTYISDDLLNEIPTKEGLKSDADGKLLTE 130
Query: 627 WSETSDVNFRNNSNQSFSTKDQEYSMSLRIQDLSSTSNEV--EDVHNRDDILLSGINFNK 800
E N R N+++ ++ Q + L I +L+ + E D + + + +K
Sbjct: 131 GGENE--NLRKNASKKETSLFQGFKSYLPIAELAIENTERLNYDTNGTSGTVGAKDVMSK 188
Query: 801 TSYNGNLNKEMFNFQHELEFTPGVESGNSSN 893
T+ ++ E+ NFQ PGVE+ S+
Sbjct: 189 TNERDEIHTELPNFQDSFLIPPGVETKKISS 219
>sp|P04933|MSP1_PLAFW Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (P195)
Length = 1639
Score = 32.7 bits (73), Expect = 1.4
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Frame = +3
Query: 507 KRPHDDINEVCMSQIDYRLDEPAFKKPWPEKQTSDSYITPWSETSDVNFRNNSNQSFSTK 686
++P D+I + DY KK K+T ++ I E S N N +TK
Sbjct: 225 RKPLDNIKDNVGKMEDY------IKK---NKKTIEN-INELIEESKKTIDKNKN---ATK 271
Query: 687 DQEYSMSLRIQ-DLSSTSNEVEDVHNRDDILLSGINFNKTSYNGNLNKEMFNFQHELEFT 863
++E + Q DLS + ++E+ HN +L I+ K + N KE+ + +E++
Sbjct: 272 EEEKKKLYQAQYDLSIYNKQLEEAHNLISVLEKRIDTLKKNEN---IKELLDKINEIKNP 328
Query: 864 PGVESGNSSN 893
P SGN+ N
Sbjct: 329 PPANSGNTPN 338
>sp|Q01055|V120_SHV21 Capsid assembly protein 63
Length = 899
Score = 32.7 bits (73), Expect = 1.4
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = -2
Query: 526 ISSCGLLDECSENIDSAVVGEYSKFSANSFRQSVNGISLSSLAYCEFKFSSDFCFLLSIS 347
+ SCGL +EC + ++V+ F++NS++ ISL S + SDF +
Sbjct: 332 LESCGLTEECCHRLQTSVLISNVSFTSNSWKGYETFISLIS----QLVLFSDFFYKCLF- 386
Query: 346 ENSI*KYASSLNVGHFKL 293
Y S ++GH K+
Sbjct: 387 ------YFSPTSIGHSKI 398
>sp|P04932|MSP1_PLAFK Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (P190)
Length = 1630
Score = 32.7 bits (73), Expect = 1.4
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Frame = +3
Query: 507 KRPHDDINEVCMSQIDYRLDEPAFKKPWPEKQTSDSYITPWSETSDVNFRNNSNQSFSTK 686
++P D+I + DY KK K+T ++ I E S N N +TK
Sbjct: 216 RKPLDNIKDNVGKMEDY------IKK---NKKTIEN-INELIEESKKTIDKNKN---ATK 262
Query: 687 DQEYSMSLRIQ-DLSSTSNEVEDVHNRDDILLSGINFNKTSYNGNLNKEMFNFQHELEFT 863
++E + Q DLS + ++E+ HN +L I+ K + N KE+ + +E++
Sbjct: 263 EEEKKKLYQAQYDLSIYNKQLEEAHNLISVLEKRIDTLKKNEN---IKELLDKINEIKNP 319
Query: 864 PGVESGNSSN 893
P SGN+ N
Sbjct: 320 PPANSGNTPN 329
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,454,279
Number of Sequences: 369166
Number of extensions: 1768888
Number of successful extensions: 5240
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5238
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)