Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_N03
(671 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O97646|AMEL_ORNAN Amelogenin 32 1.5
sp|Q9PU36|PCLO_CHICK Piccolo protein (Aczonin) 31 3.3
sp|Q9YGH3|SMS1B_CARAU Somatostatin IB precursor [Contains: ... 30 7.5
sp|Q60293|YZ38_METJA Hypothetical protein MJECL38 29 9.7
sp|Q01443|SSP2_PLAYO Sporozoite surface protein 2 precursor 29 9.7
>sp|O97646|AMEL_ORNAN Amelogenin
Length = 121
Score = 32.0 bits (71), Expect = 1.5
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +1
Query: 226 IPAVPDATCEEQHSSILPH*PSYPKLPKIPQKDPKAP-QNDPKVHQNDPKVF*NDPKLPK 402
+P P T + H S LP P P++PQ+ P P Q H P P LP
Sbjct: 43 MPGQPSVTPTQHHQSNLPQPAQQPFQPQVPQQPPHQPIQPQAPAHPMPPM---PQPPLPP 99
Query: 403 M 405
M
Sbjct: 100 M 100
>sp|Q9PU36|PCLO_CHICK Piccolo protein (Aczonin)
Length = 5120
Score = 30.8 bits (68), Expect = 3.3
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 435 VHQNDPKVPQNDPKLLK*SQTA*MIPKFLKMIPNCSK*SQ-SIPK*FQSSNRNEIPPNGT 611
+H + KVP + PK K Q + PK L S +Q + F + + I P+GT
Sbjct: 3566 LHPDIAKVPPSSPKAAKMMQRSMSDPKPLSPTAEDSSRAQFQYTEGFMTKGSSSITPSGT 3625
Query: 612 QLESDKVVHSPP 647
Q + + + +PP
Sbjct: 3626 QKKVKRTLPNPP 3637
>sp|Q9YGH3|SMS1B_CARAU Somatostatin IB precursor [Contains: [Pro12]somatostatin-24;
[Pro2]Somatostatin-14]
Length = 111
Score = 29.6 bits (65), Expect = 7.5
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +1
Query: 196 VSNCQ*DGHVIPAVPDATCEEQHSSILPH*PSYPKLPKIPQKDPKAP 336
V N DG + P DA EE S L Y +L ++PQ+D KAP
Sbjct: 55 VDNSVLDGEIAPVPFDA--EEPLESRLEERAVYNRLSQLPQRDRKAP 99
>sp|Q60293|YZ38_METJA Hypothetical protein MJECL38
Length = 259
Score = 29.3 bits (64), Expect = 9.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 474 WDHFEELWDHFDELWNHFEE 415
W++F+E D F++LWN E+
Sbjct: 20 WEYFKEFDDEFNKLWNEIEK 39
>sp|Q01443|SSP2_PLAYO Sporozoite surface protein 2 precursor
Length = 827
Score = 29.3 bits (64), Expect = 9.7
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 286 PSYPKLPKIPQKDPKAPQN-DPKVHQNDPKVF*NDPKLP 399
P P P IP K P+ P N + V+ NDP NDP P
Sbjct: 281 PQIPIPPVIPNKIPEKPSNPEEPVNPNDP----NDPNNP 315
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,991,808
Number of Sequences: 369166
Number of extensions: 1587257
Number of successful extensions: 5966
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5915
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5636246860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)