Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_N02
(252 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34256|YKA4_CAEEL Hypothetical protein B0303.4 in chromo... 32 0.35
sp|P36197|TCF8_CHICK Transcription factor 8 (Delta-crystall... 32 0.45
sp|Q01550|TANA_XENLA Tanabin 32 0.59
sp|Q07134|H1O_CHITH Histone H1, orphon 31 1.0
sp|P02977|M5_STRP5 M protein, serotype 5 precursor 31 1.0
sp|Q57997|Y577_METJA Protein MJ0577 31 1.0
sp|Q96YR5|RAD50_SULTO DNA double-strand break repair rad50 ... 31 1.0
sp|Q9UJF2|NGAP_HUMAN Ras GTPase-activating protein nGAP (RA... 30 1.3
sp|P11501|HS90A_CHICK Heat shock protein HSP 90-alpha 30 1.3
sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha (HSP 86) 30 1.7
>sp|P34256|YKA4_CAEEL Hypothetical protein B0303.4 in chromosome III
Length = 616
Score = 32.3 bits (72), Expect = 0.35
Identities = 23/64 (35%), Positives = 35/64 (54%)
Frame = +1
Query: 31 KEDSGEKLKDDTSEKDKIAEDHENKEAVVENELTIKDCKSDEIIDVKEIELKVVPIQEDK 210
+ED E DD+S+ D I EDHE +E ++E T + + D ++EIE V ED
Sbjct: 253 EEDDEEDDDDDSSD-DAIIEDHEEEEGQDDDEET--EIEIDRGGPIEEIEQVEVEQNEDP 309
Query: 211 GVDE 222
+D+
Sbjct: 310 PLDD 313
>sp|P36197|TCF8_CHICK Transcription factor 8 (Delta-crystallin enhancer binding factor)
(Delta EF1)
Length = 1114
Score = 32.0 bits (71), Expect = 0.45
Identities = 24/76 (31%), Positives = 36/76 (47%)
Frame = +1
Query: 1 ARGEISPKMIKEDSGEKLKDDTSEKDKIAEDHENKEAVVENELTIKDCKSDEIIDVKEIE 180
A SP I D E L + E+D E+ E +E VE K+C+ ++ DV+E E
Sbjct: 1011 AGARASPSQIDSDERESLTRE-EEEDSEKEEEEEEEKDVEGLQEEKECR--KLQDVEEEE 1067
Query: 181 LKVVPIQEDKGVDESN 228
+E++G E N
Sbjct: 1068 EVEEEEEEEEGKTEGN 1083
>sp|Q01550|TANA_XENLA Tanabin
Length = 1744
Score = 31.6 bits (70), Expect = 0.59
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 46 EKLKDDTSEKDKIAEDHENKEAVVENELTIKDCKSDEIIDVKEIELKVVPIQEDKGVD-E 222
E+ +D EK+++ H + + V +E+TI + S+ IID EL V + E + E
Sbjct: 1105 EQANNDLLEKEEVILHHADDQRSVNDEITIDEKLSERIID---NELATVDVNESLAANKE 1161
Query: 223 SNDLVSD 243
DL +D
Sbjct: 1162 QVDLFTD 1168
>sp|Q07134|H1O_CHITH Histone H1, orphon
Length = 244
Score = 30.8 bits (68), Expect = 1.0
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 10 EISPKMIKEDSGEKLKDDTSEKDKIAEDHEN-KEAVVENELTIKDCKSDEIIDVKE 174
E +PK K EK K D +K K+A H E VV T+K+ +I +K+
Sbjct: 26 EKAPKAPKSPKAEKPKSDKPKKPKVAPTHPPVSEMVVNAVTTLKERGGSSLIAIKK 81
>sp|P02977|M5_STRP5 M protein, serotype 5 precursor
Length = 492
Score = 30.8 bits (68), Expect = 1.0
Identities = 16/68 (23%), Positives = 38/68 (55%)
Frame = +1
Query: 46 EKLKDDTSEKDKIAEDHENKEAVVENELTIKDCKSDEIIDVKEIELKVVPIQEDKGVDES 225
+K+ D+T KDKIA++ ENKE + + + + D++ ++ + + ++++ +
Sbjct: 197 KKILDETV-KDKIAKEQENKETIGTLKKILDETVKDKLAKEQKSKQNIGALKQELAKKDE 255
Query: 226 NDLVSDTS 249
+ +SD S
Sbjct: 256 ANKISDAS 263
Score = 29.3 bits (64), Expect = 2.9
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 4 RGEISPKMIKEDSGEKLKDDTSEK---DKIAEDHENKEAVVENELTIKDCKSDEIIDVKE 174
R E++ K + EK ++ EK DKIA++ ENKE + + + + D+I +E
Sbjct: 154 RQELANKQQESKENEKALNELLEKTVKDKIAKEQENKETIGTLKKILDETVKDKIAKEQE 213
>sp|Q57997|Y577_METJA Protein MJ0577
Length = 162
Score = 30.8 bits (68), Expect = 1.0
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 73 KDKIAEDHENKEAVVENELTIKDCKSDEIIDVKEIELKVVPIQEDKGVD 219
K+K+ E+ +NK ++ EL K +II V ++V I ED+GVD
Sbjct: 74 KNKLTEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVD 122
>sp|Q96YR5|RAD50_SULTO DNA double-strand break repair rad50 ATPase
Length = 879
Score = 30.8 bits (68), Expect = 1.0
Identities = 20/67 (29%), Positives = 36/67 (53%)
Frame = +1
Query: 4 RGEISPKMIKEDSGEKLKDDTSEKDKIAEDHENKEAVVENELTIKDCKSDEIIDVKEIEL 183
R E+ + + EKL+ D EKDK+ E+ KE ++E + IK + E +K I++
Sbjct: 263 REEVKDENRLREEKEKLEKDILEKDKLIEE---KEKIIEAQNKIKLAQEKE-KSLKTIKI 318
Query: 184 KVVPIQE 204
+ ++E
Sbjct: 319 NLTDLEE 325
>sp|Q9UJF2|NGAP_HUMAN Ras GTPase-activating protein nGAP (RAS protein activator-like 1)
Length = 1139
Score = 30.4 bits (67), Expect = 1.3
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 34 EDSGEKLKDDTSEKDKIAEDHENKEAVVENELTIKDCKSDEIIDVKEIELKVVPIQEDK- 210
EDS E+L+ EKD + ++ VE EL + +ID K+ K++ QE +
Sbjct: 1033 EDSEERLRRQQEEKDSQMKSIISRLMAVEEELKKDHAEMQAVIDAKQ---KIIDAQEKRI 1089
Query: 211 -GVDESN 228
+D +N
Sbjct: 1090 VSLDSAN 1096
>sp|P11501|HS90A_CHICK Heat shock protein HSP 90-alpha
Length = 728
Score = 30.4 bits (67), Expect = 1.3
Identities = 18/65 (27%), Positives = 38/65 (58%)
Frame = +1
Query: 28 IKEDSGEKLKDDTSEKDKIAEDHENKEAVVENELTIKDCKSDEIIDVKEIELKVVPIQED 207
++++ +++ DD +E+ + E+ E KE E++ I+D SDE + K+ + K ++
Sbjct: 221 VEKERDKEVSDDEAEEKE--EEKEEKEEKTEDKPEIEDVGSDEEEEKKDGDKKKKKKIKE 278
Query: 208 KGVDE 222
K +DE
Sbjct: 279 KYIDE 283
>sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha (HSP 86)
Length = 732
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +1
Query: 31 KEDSGEKLKDDTSEKDKIAEDHENKEAVVENELTIKDCKSDEIIDVKEIELKVVPIQEDK 210
KE E D+ EK+ E+ E +E E++ I+D SDE + K+ + K ++K
Sbjct: 224 KERDKEVSDDEAEEKEDKEEEKEKEEKESEDKPEIEDVGSDEEEEKKDGDKKKKKKIKEK 283
Query: 211 GVDE 222
+D+
Sbjct: 284 YIDQ 287
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.300 0.125 0.319
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,724,603
Number of Sequences: 369166
Number of extensions: 246851
Number of successful extensions: 998
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 68,354,980
effective HSP length: 54
effective length of database: 58,379,290
effective search space used: 1692999410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)