Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_M06
(783 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O15523|DDX3Y_HUMAN DEAD-box protein 3, Y-chromosomal 317 2e-86
sp|P16381|PL10_MOUSE Putative ATP-dependent RNA helicase PL10 317 2e-86
sp|O00571|DDX3X_HUMAN DEAD-box protein 3, X-chromosomal (He... 316 5e-86
sp|Q6GVM6|DDX3Y_PANTR DEAD-box protein 3, Y-chromosomal 316 5e-86
sp|P24346|AN3_XENLA Putative ATP-dependent RNA helicase An3 315 7e-86
sp|Q62167|DDX3X_MOUSE DEAD-box protein 3, X-chromosomal (DE... 315 9e-86
sp|Q5RF43|DDX3Y_PONPY DEAD-box protein 3, Y-chromosomal 314 2e-85
sp|Q62095|DDX3Y_MOUSE DEAD-box protein 3, Y-chromosomal (DE... 314 2e-85
sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 288 1e-77
sp|P24784|DBP1_YEAST Probable ATP-dependent RNA helicase DB... 286 3e-77
>sp|O15523|DDX3Y_HUMAN DEAD-box protein 3, Y-chromosomal
Length = 660
Score = 317 bits (812), Expect = 2e-86
Identities = 163/240 (67%), Positives = 191/240 (79%), Gaps = 2/240 (0%)
Frame = +2
Query: 68 SGNY--EKQYPVALILAPTRELACQIYEETRKFSYRSQVRSCVVYGGADINKQIYNLSRG 241
+G Y KQYP++L+LAPTRELA QIYEE RKFSYRS+VR CVVYGGADI +QI +L RG
Sbjct: 255 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERG 314
Query: 242 CNLLVATPGRLIDMMKRNKIGLEYIRYLVLDEADRMLDMGFEPQIRQIVEESDMPYVGDR 421
C+LLVATPGRL+DMM+R KIGL++ +YLVLDEADRMLDMGFEPQIR+IVE+ MP G R
Sbjct: 315 CHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVR 374
Query: 422 QTLMFSATFPKEIQHLATDFLNYYIFLAVGIVGSSSHNITQHVIYIEEFRKRNHLLQILT 601
T+MFSATFPKEIQ LA DFL+ YIFLAVG VGS+S NITQ V+++E+ KR+ LL IL
Sbjct: 375 HTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILG 434
Query: 602 NLKSDDLVLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDGSSPILV 781
SD L L+FVETKKGA LE+FL + TSIHGDR Q +RE AL F+ G SPILV
Sbjct: 435 ATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILV 494
>sp|P16381|PL10_MOUSE Putative ATP-dependent RNA helicase PL10
Length = 660
Score = 317 bits (812), Expect = 2e-86
Identities = 162/240 (67%), Positives = 191/240 (79%), Gaps = 2/240 (0%)
Frame = +2
Query: 68 SGNY--EKQYPVALILAPTRELACQIYEETRKFSYRSQVRSCVVYGGADINKQIYNLSRG 241
+G Y KQYP++L+LAPTRELA QIYEE RKFSYRS+VR CVVYGGADI +QI +L RG
Sbjct: 256 NGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERG 315
Query: 242 CNLLVATPGRLIDMMKRNKIGLEYIRYLVLDEADRMLDMGFEPQIRQIVEESDMPYVGDR 421
C+LLVATPGRL+DMM+R KIGL++ +YLVLDEADRMLDMGFEPQIR+IVE+ MP G R
Sbjct: 316 CHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVR 375
Query: 422 QTLMFSATFPKEIQHLATDFLNYYIFLAVGIVGSSSHNITQHVIYIEEFRKRNHLLQILT 601
T+MFSATFPKEIQ LA DFL+ YIFLAVG VGS+S NITQ V+++EE KR+ LL +L
Sbjct: 376 HTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLLDLLN 435
Query: 602 NLKSDDLVLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDGSSPILV 781
D L+L+FVETKKGA LE+FL + TSIHGDR Q +RE AL F+ G SPILV
Sbjct: 436 ATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILV 495
>sp|O00571|DDX3X_HUMAN DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2)
(DEAD-box, X isoform)
Length = 662
Score = 316 bits (809), Expect = 5e-86
Identities = 162/240 (67%), Positives = 190/240 (79%), Gaps = 2/240 (0%)
Frame = +2
Query: 68 SGNY--EKQYPVALILAPTRELACQIYEETRKFSYRSQVRSCVVYGGADINKQIYNLSRG 241
+G Y KQYP++L+LAPTRELA QIYEE RKFSYRS+VR CVVYGGADI +QI +L RG
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERG 316
Query: 242 CNLLVATPGRLIDMMKRNKIGLEYIRYLVLDEADRMLDMGFEPQIRQIVEESDMPYVGDR 421
C+LLVATPGRL+DMM+R KIGL++ +YLVLDEADRMLDMGFEPQIR+IVE+ MP G R
Sbjct: 317 CHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVR 376
Query: 422 QTLMFSATFPKEIQHLATDFLNYYIFLAVGIVGSSSHNITQHVIYIEEFRKRNHLLQILT 601
T+MFSATFPKEIQ LA DFL+ YIFLAVG VGS+S NITQ V+++EE KR+ LL +L
Sbjct: 377 HTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLN 436
Query: 602 NLKSDDLVLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDGSSPILV 781
D L L+FVETKKGA LE+FL + TSIHGDR Q +RE AL F+ G SPILV
Sbjct: 437 ATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILV 496
>sp|Q6GVM6|DDX3Y_PANTR DEAD-box protein 3, Y-chromosomal
Length = 660
Score = 316 bits (809), Expect = 5e-86
Identities = 162/240 (67%), Positives = 191/240 (79%), Gaps = 2/240 (0%)
Frame = +2
Query: 68 SGNY--EKQYPVALILAPTRELACQIYEETRKFSYRSQVRSCVVYGGADINKQIYNLSRG 241
+G Y KQYP++L+LAPTRELA QIYEE RKFSYRS+VR CVVYGGADI +QI +L RG
Sbjct: 255 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERG 314
Query: 242 CNLLVATPGRLIDMMKRNKIGLEYIRYLVLDEADRMLDMGFEPQIRQIVEESDMPYVGDR 421
C+LLVATPGRL+DMM+R KIGL++ +YLVLDEADRMLDMGFEPQIR+IVE+ MP G R
Sbjct: 315 CHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVR 374
Query: 422 QTLMFSATFPKEIQHLATDFLNYYIFLAVGIVGSSSHNITQHVIYIEEFRKRNHLLQILT 601
T+MFSATFPKEIQ LA DFL+ YIFLAVG VGS+S NITQ V+++E+ KR+ LL IL
Sbjct: 375 HTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILG 434
Query: 602 NLKSDDLVLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDGSSPILV 781
+D L L+FVETKKGA LE+FL + TSIHGDR Q +RE AL F+ G SPILV
Sbjct: 435 AAGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILV 494
>sp|P24346|AN3_XENLA Putative ATP-dependent RNA helicase An3
Length = 697
Score = 315 bits (808), Expect = 7e-86
Identities = 164/246 (66%), Positives = 194/246 (78%), Gaps = 3/246 (1%)
Frame = +2
Query: 53 MNH-QISGNY--EKQYPVALILAPTRELACQIYEETRKFSYRSQVRSCVVYGGADINKQI 223
M H Q +G Y KQ+P++L+LAPTRELA QIYEE RKF+YRS+VR CVVYGGADI +QI
Sbjct: 292 MKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQI 351
Query: 224 YNLSRGCNLLVATPGRLIDMMKRNKIGLEYIRYLVLDEADRMLDMGFEPQIRQIVEESDM 403
+L RGC+LLVATPGRL+DMM+R KIGL++ +YLVLDEADRMLDMGFEPQIR+IVE+ M
Sbjct: 352 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 411
Query: 404 PYVGDRQTLMFSATFPKEIQHLATDFLNYYIFLAVGIVGSSSHNITQHVIYIEEFRKRNH 583
P G RQT+MFSATFPKEIQ LA DFL+ YIFLAVG VGS+S NITQ V+++EE KR+
Sbjct: 412 PPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSF 471
Query: 584 LLQILTNLKSDDLVLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDG 763
LL +L D L L+FVETKKGA LE+FL + TSIHGDR Q +RE AL F+ G
Sbjct: 472 LLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 531
Query: 764 SSPILV 781
SPILV
Sbjct: 532 KSPILV 537
>sp|Q62167|DDX3X_MOUSE DEAD-box protein 3, X-chromosomal (DEAD-box RNA helicase DEAD3)
(mDEAD3) (Embryonic RNA helicase) (D1Pas1-related
sequence 2)
Length = 662
Score = 315 bits (807), Expect = 9e-86
Identities = 161/240 (67%), Positives = 190/240 (79%), Gaps = 2/240 (0%)
Frame = +2
Query: 68 SGNY--EKQYPVALILAPTRELACQIYEETRKFSYRSQVRSCVVYGGADINKQIYNLSRG 241
+G Y KQYP++L+LAPTRELA QIYEE RKFSYRS+VR CVVYGGA+I +QI +L RG
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERG 316
Query: 242 CNLLVATPGRLIDMMKRNKIGLEYIRYLVLDEADRMLDMGFEPQIRQIVEESDMPYVGDR 421
C+LLVATPGRL+DMM+R KIGL++ +YLVLDEADRMLDMGFEPQIR+IVE+ MP G R
Sbjct: 317 CHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVR 376
Query: 422 QTLMFSATFPKEIQHLATDFLNYYIFLAVGIVGSSSHNITQHVIYIEEFRKRNHLLQILT 601
T+MFSATFPKEIQ LA DFL+ YIFLAVG VGS+S NITQ V+++EE KR+ LL +L
Sbjct: 377 HTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLLDLLN 436
Query: 602 NLKSDDLVLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDGSSPILV 781
D L L+FVETKKGA LE+FL + TSIHGDR Q +RE AL F+ G SPILV
Sbjct: 437 ATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILV 496
>sp|Q5RF43|DDX3Y_PONPY DEAD-box protein 3, Y-chromosomal
Length = 658
Score = 314 bits (805), Expect = 2e-85
Identities = 161/240 (67%), Positives = 190/240 (79%), Gaps = 2/240 (0%)
Frame = +2
Query: 68 SGNY--EKQYPVALILAPTRELACQIYEETRKFSYRSQVRSCVVYGGADINKQIYNLSRG 241
+G Y KQYP++L+LAPTRELA QIYEE RKFSYRS+VR CVVYGGADI +QI +L RG
Sbjct: 255 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERG 314
Query: 242 CNLLVATPGRLIDMMKRNKIGLEYIRYLVLDEADRMLDMGFEPQIRQIVEESDMPYVGDR 421
C+LLVATPGRL+DMM+R KIGL++ +YLVLDEADRMLDMGFEPQIR+IVE+ MP G R
Sbjct: 315 CHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVR 374
Query: 422 QTLMFSATFPKEIQHLATDFLNYYIFLAVGIVGSSSHNITQHVIYIEEFRKRNHLLQILT 601
T+MFSATFPKEIQ LA DFL+ YIFLAVG VGS+S NITQ V+++E+ KR+ LL +L
Sbjct: 375 HTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDLLG 434
Query: 602 NLKSDDLVLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDGSSPILV 781
D L L+FVETKKGA LE+FL + TSIHGDR Q +RE AL F+ G SPILV
Sbjct: 435 ATGRDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILV 494
>sp|Q62095|DDX3Y_MOUSE DEAD-box protein 3, Y-chromosomal (DEAD-box RNA helicase DEAD2)
(mDEAD2) (D1Pas1-related sequence 1)
Length = 658
Score = 314 bits (804), Expect = 2e-85
Identities = 161/240 (67%), Positives = 188/240 (78%), Gaps = 2/240 (0%)
Frame = +2
Query: 68 SGNY--EKQYPVALILAPTRELACQIYEETRKFSYRSQVRSCVVYGGADINKQIYNLSRG 241
+G Y KQYP++L+LAPTRELA QIYEE RKFSYRS+VR CVVYGGAD +QI +L RG
Sbjct: 256 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERG 315
Query: 242 CNLLVATPGRLIDMMKRNKIGLEYIRYLVLDEADRMLDMGFEPQIRQIVEESDMPYVGDR 421
C+LLVATPGRL+DMM+R KIGL++ +YLVLDEADRMLDMGFEPQIR+IVE+ MP G R
Sbjct: 316 CHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVR 375
Query: 422 QTLMFSATFPKEIQHLATDFLNYYIFLAVGIVGSSSHNITQHVIYIEEFRKRNHLLQILT 601
T+MFSATFPKEIQ LA DFL+ YIFLAVG VGS+S NITQ V+++EE KR+ LL +L
Sbjct: 376 HTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLN 435
Query: 602 NLKSDDLVLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDGSSPILV 781
D L L+FVETKKGA LENFL + TSIHGDR Q +RE AL F+ G PILV
Sbjct: 436 ATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILV 495
>sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1
Length = 636
Score = 288 bits (737), Expect = 1e-77
Identities = 146/233 (62%), Positives = 179/233 (76%)
Frame = +2
Query: 83 KQYPVALILAPTRELACQIYEETRKFSYRSQVRSCVVYGGADINKQIYNLSRGCNLLVAT 262
K YP LILAPTREL CQI+EE+RKF YRS VR C VYGGADI QI + +GC+LL AT
Sbjct: 253 KAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSAT 312
Query: 263 PGRLIDMMKRNKIGLEYIRYLVLDEADRMLDMGFEPQIRQIVEESDMPYVGDRQTLMFSA 442
PGRL+D++ R +I L I++LVLDEADRMLDMGFEPQIR IVE +DM V +RQTLMFSA
Sbjct: 313 PGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSA 372
Query: 443 TFPKEIQHLATDFLNYYIFLAVGIVGSSSHNITQHVIYIEEFRKRNHLLQILTNLKSDDL 622
TFP++IQ LA DFL Y+FL+VG VGS+S NITQ V+++E+ KR++LL IL L + L
Sbjct: 373 TFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLLDILHTLPPEGL 432
Query: 623 VLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDGSSPILV 781
LIFVETK+ A L ++LL +FP TSIHGDR Q ERE AL+ F+ G + I+V
Sbjct: 433 TLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMV 485
>sp|P24784|DBP1_YEAST Probable ATP-dependent RNA helicase DBP1 (Helicase CA1)
Length = 617
Score = 286 bits (733), Expect = 3e-77
Identities = 148/233 (63%), Positives = 181/233 (77%)
Frame = +2
Query: 83 KQYPVALILAPTRELACQIYEETRKFSYRSQVRSCVVYGGADINKQIYNLSRGCNLLVAT 262
K YP AL+LAPTRELA QI+EE RKF+YRS VR CVVYGGA I Q+ + RGC+LLVAT
Sbjct: 235 KGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVAT 294
Query: 263 PGRLIDMMKRNKIGLEYIRYLVLDEADRMLDMGFEPQIRQIVEESDMPYVGDRQTLMFSA 442
PGRL D+++R K+ L I+YLVLDEADRMLDMGFEPQIR IVEE DMP V +RQTLMFSA
Sbjct: 295 PGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSA 354
Query: 443 TFPKEIQHLATDFLNYYIFLAVGIVGSSSHNITQHVIYIEEFRKRNHLLQILTNLKSDDL 622
TFP +IQHLA DFL+ YIFL+VG VGS+S NITQ ++Y+++ K++ LL +L + + L
Sbjct: 355 TFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSALLDLL-SAEHKGL 413
Query: 623 VLIFVETKKGARQLENFLLTRDFPVTSIHGDRKQLEREAALKCFKDGSSPILV 781
LIFVETK+ A QL +FL+ ++F T+IHGDR Q ERE AL FK + ILV
Sbjct: 414 TLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILV 466
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,782,038
Number of Sequences: 369166
Number of extensions: 1500852
Number of successful extensions: 4292
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3866
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7357347200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)