Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_M04
(476 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24400|MLP2_DROME Muscle LIM protein Mlp84B 73 3e-13
sp|P67966|CSRP1_CHICK Cysteine-rich protein 1 (CRP1) (CRP) ... 66 4e-11
sp|P47875|CSRP1_RAT Cysteine and glycine-rich protein 1 (Cy... 64 2e-10
sp|Q3MHY1|CSRP1_BOVIN Cysteine and glycine-rich protein 1 (... 63 3e-10
sp|P97315|CSRP1_MOUSE Cysteine and glycine-rich protein 1 (... 62 9e-10
sp|P21291|CSRP1_HUMAN Cysteine and glycine-rich protein 1 (... 61 1e-09
sp|Q5RCT4|CSRP1_PONPY Cysteine and glycine-rich protein 1 (... 60 2e-09
sp|Q05158|CSRP2_COTJA Cysteine and glycine-rich protein 2 (... 60 3e-09
sp|P50460|CSRP2_CHICK Cysteine and glycine-rich protein 2 (... 59 4e-09
sp|P97314|CSRP2_MOUSE Cysteine and glycine-rich protein 2 (... 59 4e-09
>sp|Q24400|MLP2_DROME Muscle LIM protein Mlp84B
Length = 495
Score = 73.2 bits (178), Expect = 3e-13
Identities = 45/99 (45%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Frame = +3
Query: 39 TLYMDKGGQFGN*DAPTGNKPNVMGGKVV-------APEDGGCPRCGKRVYDAEKAIGCP 197
TL MD G QF G+ P+V G + APE GCPRCG VY AE+ +
Sbjct: 81 TLSMDNGSQFLR---ENGDVPSVRNGARLEPRAIARAPEGEGCPRCGGYVYAAEQMLA-- 135
Query: 198 DGLSFHKTCFICKECKKKLDSTILCTYKEEKDVYWKTCY 314
G S+HK CF C CKK LDS ILC +K++Y K CY
Sbjct: 136 RGRSWHKECFKCGTCKKGLDS-ILCCEAPDKNIYCKGCY 173
Score = 60.1 bits (144), Expect = 3e-09
Identities = 31/66 (46%), Positives = 40/66 (60%)
Frame = +3
Query: 117 KVVAPEDGGCPRCGKRVYDAEKAIGCPDGLSFHKTCFICKECKKKLDSTILCTYKEEKDV 296
K+ A GCPRCG VY AE+ + G +HK CF CK+C K LDS I + ++DV
Sbjct: 213 KIQARPGEGCPRCGGVVYAAEQKLS--KGREWHKKCFNCKDCHKTLDS-INASDGPDRDV 269
Query: 297 YWKTCY 314
Y +TCY
Sbjct: 270 YCRTCY 275
Score = 59.3 bits (142), Expect = 4e-09
Identities = 30/57 (52%), Positives = 37/57 (64%)
Frame = +3
Query: 144 CPRCGKRVYDAEKAIGCPDGLSFHKTCFICKECKKKLDSTILCTYKEEKDVYWKTCY 314
CPRCGK VY AE+ + G FHK CF C C K LDST CT + E+++Y KTC+
Sbjct: 12 CPRCGKSVYAAEERLA--GGYVFHKNCFKCGMCNKSLDST-NCT-EHERELYCKTCH 64
Score = 54.7 bits (130), Expect = 1e-07
Identities = 27/59 (45%), Positives = 35/59 (59%)
Frame = +3
Query: 138 GGCPRCGKRVYDAEKAIGCPDGLSFHKTCFICKECKKKLDSTILCTYKEEKDVYWKTCY 314
GGCPRCG V+ AE+ I +HK CF C +C+K LDST L + D+Y + CY
Sbjct: 419 GGCPRCGFAVFAAEQMIS--KTRIWHKRCFYCSDCRKSLDSTNL-NDGPDGDIYCRACY 474
Score = 52.0 bits (123), Expect = 7e-07
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +3
Query: 78 DAPTGNKP--NVMGGKVVAPEDGGCPRCGKRVYDAEKAIGCPDGLSFHKTCFICKECKKK 251
D + N+P N + A + GCPRCG V+ AE+ + G +HK C+ C +C +
Sbjct: 301 DQISANRPFYNPDTTSIKARDGEGCPRCGGAVFAAEQQLS--KGKVWHKKCYNCADCHRP 358
Query: 252 LDSTILCTYKEEKDVYWKTCY 314
LDS + C + D++ + CY
Sbjct: 359 LDSVLACD-GPDGDIHCRACY 378
>sp|P67966|CSRP1_CHICK Cysteine-rich protein 1 (CRP1) (CRP)
sp|P67967|CSRP1_COTJA Cysteine-rich protein 1 (CRP1) (CRP)
Length = 192
Score = 66.2 bits (160), Expect = 4e-11
Identities = 41/98 (41%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Frame = +3
Query: 39 TLYMDKGGQFG------N*DAPTGNKPNVMGGKVVAPEDGGCPRCGKRVYDAEKAIGCPD 200
TL DKG G PT + M KV + GCPRCG+ VY AEK IG
Sbjct: 79 TLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSD--GCPRCGQAVYAAEKVIGA-- 134
Query: 201 GLSFHKTCFICKECKKKLDSTILCTYKEEKDVYWKTCY 314
G S+HK+CF C +C K L+ST L ++ ++Y K CY
Sbjct: 135 GKSWHKSCFRCAKCGKSLESTTLA--DKDGEIYCKGCY 170
Score = 57.8 bits (138), Expect = 1e-08
Identities = 33/72 (45%), Positives = 43/72 (59%)
Frame = +3
Query: 99 PNVMGGKVVAPEDGGCPRCGKRVYDAEKAIGCPDGLSFHKTCFICKECKKKLDSTILCTY 278
PN GGK C C K VY AE+ + C +G SFHK+CF+C CKK LDST + +
Sbjct: 2 PNWGGGKK-------CGVCQKAVYFAEE-VQC-EGSSFHKSCFLCMVCKKNLDSTTVAVH 52
Query: 279 KEEKDVYWKTCY 314
+E +Y K+CY
Sbjct: 53 GDE--IYCKSCY 62
>sp|P47875|CSRP1_RAT Cysteine and glycine-rich protein 1 (Cysteine-rich protein 1)
(CRP1) (CRP)
Length = 193
Score = 63.9 bits (154), Expect = 2e-10
Identities = 42/98 (42%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Frame = +3
Query: 39 TLYMDKGGQFG--N*DAPTGNKPNVM-GGKVVAPEDGG---CPRCGKRVYDAEKAIGCPD 200
TL MDKG G + +AP G++P A + GG CPRC + VY AEK IG
Sbjct: 79 TLSMDKGESLGIKHEEAP-GHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEKVIGA-- 135
Query: 201 GLSFHKTCFICKECKKKLDSTILCTYKEEKDVYWKTCY 314
G S+HK+CF C +C K L+ST L ++ ++Y K CY
Sbjct: 136 GKSWHKSCFRCAKCGKGLESTTLA--DKDGEIYCKGCY 171
Score = 58.5 bits (140), Expect = 8e-09
Identities = 34/72 (47%), Positives = 43/72 (59%)
Frame = +3
Query: 99 PNVMGGKVVAPEDGGCPRCGKRVYDAEKAIGCPDGLSFHKTCFICKECKKKLDSTILCTY 278
PN GGK C C K VY AE+ + C +G SFHK+CF+C CKK LDST + +
Sbjct: 2 PNWGGGKK-------CGVCQKTVYFAEE-VQC-EGNSFHKSCFLCMVCKKNLDSTTVAVH 52
Query: 279 KEEKDVYWKTCY 314
EE +Y K+CY
Sbjct: 53 GEE--IYCKSCY 62
>sp|Q3MHY1|CSRP1_BOVIN Cysteine and glycine-rich protein 1 (Cysteine-rich protein 1)
(CRP1)
Length = 193
Score = 63.2 bits (152), Expect = 3e-10
Identities = 42/98 (42%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Frame = +3
Query: 39 TLYMDKGGQFG--N*DAPTGNKPNVMGG-KVVAPEDGG---CPRCGKRVYDAEKAIGCPD 200
TL MDKG G + +AP G++P A + GG CPRC + VY AEK IG
Sbjct: 79 TLSMDKGESLGIRHEEAP-GHRPTTNPNTSKFAQKVGGSERCPRCSQAVYAAEKVIGA-- 135
Query: 201 GLSFHKTCFICKECKKKLDSTILCTYKEEKDVYWKTCY 314
G S+HK+CF C +C K L+ST L ++ ++Y K CY
Sbjct: 136 GKSWHKSCFRCAKCGKGLESTTLA--DKDGEIYCKGCY 171
Score = 58.5 bits (140), Expect = 8e-09
Identities = 34/72 (47%), Positives = 43/72 (59%)
Frame = +3
Query: 99 PNVMGGKVVAPEDGGCPRCGKRVYDAEKAIGCPDGLSFHKTCFICKECKKKLDSTILCTY 278
PN GGK C C K VY AE+ + C +G SFHK+CF+C CKK LDST + +
Sbjct: 2 PNWGGGKK-------CGVCQKTVYFAEE-VQC-EGSSFHKSCFLCLVCKKNLDSTTVAVH 52
Query: 279 KEEKDVYWKTCY 314
EE +Y K+CY
Sbjct: 53 GEE--IYCKSCY 62
>sp|P97315|CSRP1_MOUSE Cysteine and glycine-rich protein 1 (Cysteine-rich protein 1)
(CRP1) (CRP)
Length = 193
Score = 61.6 bits (148), Expect = 9e-10
Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 6/98 (6%)
Frame = +3
Query: 39 TLYMDKGGQFG--N*DAPTGNKPNVM-GGKVVAPEDGG---CPRCGKRVYDAEKAIGCPD 200
TL DKG G + +AP G++P A + GG CPRC + VY AEK IG
Sbjct: 79 TLSTDKGESLGIKHEEAP-GHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEKVIGA-- 135
Query: 201 GLSFHKTCFICKECKKKLDSTILCTYKEEKDVYWKTCY 314
G S+HK+CF C +C K L+ST L ++ ++Y K CY
Sbjct: 136 GKSWHKSCFRCAKCGKGLESTTLA--DKDGEIYCKGCY 171
Score = 58.5 bits (140), Expect = 8e-09
Identities = 34/72 (47%), Positives = 43/72 (59%)
Frame = +3
Query: 99 PNVMGGKVVAPEDGGCPRCGKRVYDAEKAIGCPDGLSFHKTCFICKECKKKLDSTILCTY 278
PN GGK C C K VY AE+ + C +G SFHK+CF+C CKK LDST + +
Sbjct: 2 PNWGGGKK-------CGVCQKTVYFAEE-VQC-EGNSFHKSCFLCMVCKKNLDSTTVAVH 52
Query: 279 KEEKDVYWKTCY 314
EE +Y K+CY
Sbjct: 53 GEE--IYCKSCY 62
>sp|P21291|CSRP1_HUMAN Cysteine and glycine-rich protein 1 (Cysteine-rich protein 1)
(CRP1) (CRP)
Length = 193
Score = 61.2 bits (147), Expect = 1e-09
Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Frame = +3
Query: 39 TLYMDKGGQFG--N*DAPTGNKPNVM-GGKVVAPEDGG---CPRCGKRVYDAEKAIGCPD 200
TL DKG G + +AP G++P A + GG CPRC + VY AEK IG
Sbjct: 79 TLSTDKGESLGIKHEEAP-GHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEKVIGA-- 135
Query: 201 GLSFHKTCFICKECKKKLDSTILCTYKEEKDVYWKTCY 314
G S+HK CF C +C K L+ST L ++ ++Y K CY
Sbjct: 136 GKSWHKACFRCAKCGKGLESTTLA--DKDGEIYCKGCY 171
Score = 58.5 bits (140), Expect = 8e-09
Identities = 34/72 (47%), Positives = 43/72 (59%)
Frame = +3
Query: 99 PNVMGGKVVAPEDGGCPRCGKRVYDAEKAIGCPDGLSFHKTCFICKECKKKLDSTILCTY 278
PN GGK C C K VY AE+ + C +G SFHK+CF+C CKK LDST + +
Sbjct: 2 PNWGGGKK-------CGVCQKTVYFAEE-VQC-EGNSFHKSCFLCMVCKKNLDSTTVAVH 52
Query: 279 KEEKDVYWKTCY 314
EE +Y K+CY
Sbjct: 53 GEE--IYCKSCY 62
>sp|Q5RCT4|CSRP1_PONPY Cysteine and glycine-rich protein 1 (Cysteine-rich protein 1)
(CRP1)
Length = 193
Score = 60.5 bits (145), Expect = 2e-09
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Frame = +3
Query: 39 TLYMDKGGQFG-N*DAPTGNKPNVM-GGKVVAPEDGG---CPRCGKRVYDAEKAIGCPDG 203
TL DKG G + G++P A + GG CPRC + VY AEK IG G
Sbjct: 79 TLSTDKGESLGIKHEESPGHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEKVIGA--G 136
Query: 204 LSFHKTCFICKECKKKLDSTILCTYKEEKDVYWKTCY 314
S+HK CF C +C K L+ST L ++ ++Y K CY
Sbjct: 137 KSWHKACFRCAKCGKGLESTTLA--DKDGEIYCKGCY 171
Score = 58.5 bits (140), Expect = 8e-09
Identities = 34/72 (47%), Positives = 43/72 (59%)
Frame = +3
Query: 99 PNVMGGKVVAPEDGGCPRCGKRVYDAEKAIGCPDGLSFHKTCFICKECKKKLDSTILCTY 278
PN GGK C C K VY AE+ + C +G SFHK+CF+C CKK LDST + +
Sbjct: 2 PNWGGGKK-------CGVCQKTVYFAEE-VQC-EGNSFHKSCFLCMVCKKNLDSTTVAVH 52
Query: 279 KEEKDVYWKTCY 314
EE +Y K+CY
Sbjct: 53 GEE--IYCKSCY 62
>sp|Q05158|CSRP2_COTJA Cysteine and glycine-rich protein 2 (Cysteine-rich protein 2)
(CRP2)
Length = 194
Score = 59.7 bits (143), Expect = 3e-09
Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Frame = +3
Query: 39 TLYMDKGGQFG--N*DAPTGNKPNVMGG-KVVAPEDGG---CPRCGKRVYDAEKAIGCPD 200
TL MD+G + G +P+ ++P A + GG C RCG VY AEK IG
Sbjct: 79 TLNMDRGERLGIKPESSPSPHRPTTNPNTSKFAQKFGGAEKCSRCGDSVYAAEKVIGA-- 136
Query: 201 GLSFHKTCFICKECKKKLDSTILCTYKEEKDVYWKTCY 314
G +HK CF C +C K L+ST L ++E ++Y K CY
Sbjct: 137 GKPWHKNCFRCAKCGKSLESTTLT--EKEGEIYCKGCY 172
Score = 57.8 bits (138), Expect = 1e-08
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Frame = +3
Query: 129 PEDGG---CPRCGKRVYDAEKAIGCPDGLSFHKTCFICKECKKKLDSTILCTYKEEKDVY 299
P GG C CG+ VY AE+ + C DG SFH+ CF+C C+K LDST + + + +VY
Sbjct: 2 PNWGGGNKCGACGRTVYHAEE-VQC-DGRSFHRCCFLCMVCRKNLDSTTVAIH--DAEVY 57
Query: 300 WKTCY 314
K+CY
Sbjct: 58 CKSCY 62
>sp|P50460|CSRP2_CHICK Cysteine and glycine-rich protein 2 (Cysteine-rich protein 2)
(CRP2) (Beta-cysteine-rich protein) (Beta-CRP)
Length = 194
Score = 59.3 bits (142), Expect = 4e-09
Identities = 39/98 (39%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Frame = +3
Query: 39 TLYMDKGGQFG--N*DAPTGNKPNVMGG-KVVAPEDGG---CPRCGKRVYDAEKAIGCPD 200
TL MD+G + G P+ ++P A + GG C RCG VY AEK IG
Sbjct: 79 TLNMDRGERLGIKPESTPSPHRPTTNPNTSKFAQKFGGAEKCSRCGDSVYAAEKVIGA-- 136
Query: 201 GLSFHKTCFICKECKKKLDSTILCTYKEEKDVYWKTCY 314
G +HK CF C +C K L+ST L ++E ++Y K CY
Sbjct: 137 GKPWHKNCFRCAKCGKSLESTTLT--EKEGEIYCKGCY 172
Score = 57.8 bits (138), Expect = 1e-08
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Frame = +3
Query: 129 PEDGG---CPRCGKRVYDAEKAIGCPDGLSFHKTCFICKECKKKLDSTILCTYKEEKDVY 299
P GG C CG+ VY AE+ + C DG SFH+ CF+C C+K LDST + + + +VY
Sbjct: 2 PNWGGGNKCGACGRTVYHAEE-VQC-DGRSFHRCCFLCMVCRKNLDSTTVAIH--DAEVY 57
Query: 300 WKTCY 314
K+CY
Sbjct: 58 CKSCY 62
>sp|P97314|CSRP2_MOUSE Cysteine and glycine-rich protein 2 (Cysteine-rich protein 2)
(CRP2) (Double LIM protein 1) (DLP-1)
Length = 193
Score = 59.3 bits (142), Expect = 4e-09
Identities = 28/57 (49%), Positives = 38/57 (66%)
Frame = +3
Query: 144 CPRCGKRVYDAEKAIGCPDGLSFHKTCFICKECKKKLDSTILCTYKEEKDVYWKTCY 314
C CG+ VY AE+ + C DG SFH+ CF+C C+K LDST + + EE +Y K+CY
Sbjct: 10 CGACGRTVYHAEE-VQC-DGRSFHRCCFLCMVCRKNLDSTTVAIHDEE--IYCKSCY 62
Score = 58.5 bits (140), Expect = 8e-09
Identities = 42/101 (41%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Frame = +3
Query: 39 TLYMDKGGQFG------N*DAPTGNKPNVMGGKVVAPEDGG---CPRCGKRVYDAEKAIG 191
TL MD+G + G PT N PN A + GG C RCG VY AEK IG
Sbjct: 79 TLNMDRGERLGIKPESAQPHRPTTN-PNT---SKFAQKYGGAEKCSRCGDSVYAAEKIIG 134
Query: 192 CPDGLSFHKTCFICKECKKKLDSTILCTYKEEKDVYWKTCY 314
G +HK CF C +C K L+ST L ++E ++Y K CY
Sbjct: 135 A--GKPWHKNCFRCAKCGKSLESTTLT--EKEGEIYCKGCY 171
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,955,750
Number of Sequences: 369166
Number of extensions: 1088987
Number of successful extensions: 3575
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3535
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2832714465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)