Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_L16
(871 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JK84|PAR6G_MOUSE Partitioning defective 6 homolog gamm... 155 1e-37
sp|Q9BYG4|PAR6G_HUMAN Partitioning defective 6 homolog gamm... 151 2e-36
sp|Q9JK83|PAR6B_MOUSE Partitioning defective 6 homolog beta... 147 3e-35
sp|Q9BYG5|PAR6B_HUMAN Partitioning defective 6 homolog beta... 147 3e-35
sp|Q9Z101|PAR6A_MOUSE Partitioning defective 6 homolog alph... 146 8e-35
sp|Q9NPB6|PAR6A_HUMAN Partitioning defective 6 homolog alph... 146 8e-35
sp|Q6B4M5|PAR6A_RAT Partitioning defective 6 homolog alpha ... 146 8e-35
sp|Q9NAN2|PAR6_CAEEL Partitioning defective 6 protein 144 3e-34
sp|Q5RDQ2|MPP5_PONPY MAGUK p55 subfamily member 5 56 1e-07
sp|Q9JLB2|MPP5_MOUSE MAGUK p55 subfamily member 5 (Protein ... 55 3e-07
>sp|Q9JK84|PAR6G_MOUSE Partitioning defective 6 homolog gamma (PAR-6 gamma) (PAR6A)
Length = 382
Score = 155 bits (392), Expect = 1e-37
Identities = 81/122 (66%), Positives = 92/122 (75%), Gaps = 1/122 (0%)
Frame = +3
Query: 6 HSNISILDDFXXXXXXXXXXXXPVAYRRVKLMRNS-SKPLGFYIRDGVSVRATPNGIEKV 182
H NIS+ DF P +RRV+L R+ KPLGFYIRDG SVR TP+G+EKV
Sbjct: 131 HLNISMPHDFRPVSSIIDVDILPETHRRVRLYRHGYEKPLGFYIRDGTSVRVTPHGLEKV 190
Query: 183 QAIFISRLIAKGLAESTGLLAVNDEVIEVNGIEVRGKTLDQVTDMMVANSSNLIITVKPV 362
IFISR++ GLAESTGLLAVNDEV+EVNGIEV GKTLDQVTDMM+ANS NLI+TVKP
Sbjct: 191 PGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIANSHNLIVTVKPA 250
Query: 363 NQ 368
NQ
Sbjct: 251 NQ 252
>sp|Q9BYG4|PAR6G_HUMAN Partitioning defective 6 homolog gamma (PAR-6 gamma) (PAR6D)
Length = 376
Score = 151 bits (382), Expect = 2e-36
Identities = 79/122 (64%), Positives = 91/122 (74%), Gaps = 1/122 (0%)
Frame = +3
Query: 6 HSNISILDDFXXXXXXXXXXXXPVAYRRVKLMRNS-SKPLGFYIRDGVSVRATPNGIEKV 182
H +I + DF P +RRV+L R+ KPLGFYIRDG SVR TP+G+EKV
Sbjct: 131 HLDIGLPRDFRPVSSIIDVDLVPETHRRVRLHRHGCEKPLGFYIRDGASVRVTPHGLEKV 190
Query: 183 QAIFISRLIAKGLAESTGLLAVNDEVIEVNGIEVRGKTLDQVTDMMVANSSNLIITVKPV 362
IFISR++ GLAESTGLLAVNDEV+EVNGIEV GKTLDQVTDMM+ANS NLI+TVKP
Sbjct: 191 PGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIANSHNLIVTVKPA 250
Query: 363 NQ 368
NQ
Sbjct: 251 NQ 252
>sp|Q9JK83|PAR6B_MOUSE Partitioning defective 6 homolog beta (PAR-6 beta) (PAR-6B)
Length = 371
Score = 147 bits (372), Expect = 3e-35
Identities = 78/122 (63%), Positives = 91/122 (74%), Gaps = 1/122 (0%)
Frame = +3
Query: 6 HSNISILDDFXXXXXXXXXXXXPVAYRRVKLMR-NSSKPLGFYIRDGVSVRATPNGIEKV 182
H IS+ DF P +RRV+L + + KPLGFYIRDG SVR TP+G+EKV
Sbjct: 130 HIVISMPQDFRPVSSIIDVDILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKV 189
Query: 183 QAIFISRLIAKGLAESTGLLAVNDEVIEVNGIEVRGKTLDQVTDMMVANSSNLIITVKPV 362
IFISRL+ GLA+STGLLAVNDEV+EVNGIEV GK+LDQVTDMM+ANS NLIITV+P
Sbjct: 190 PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPA 249
Query: 363 NQ 368
NQ
Sbjct: 250 NQ 251
>sp|Q9BYG5|PAR6B_HUMAN Partitioning defective 6 homolog beta (PAR-6 beta) (PAR-6B)
Length = 372
Score = 147 bits (372), Expect = 3e-35
Identities = 78/122 (63%), Positives = 91/122 (74%), Gaps = 1/122 (0%)
Frame = +3
Query: 6 HSNISILDDFXXXXXXXXXXXXPVAYRRVKLMR-NSSKPLGFYIRDGVSVRATPNGIEKV 182
H IS+ DF P +RRV+L + + KPLGFYIRDG SVR TP+G+EKV
Sbjct: 130 HIVISMPQDFRPVSSIIDVDILPETHRRVRLYKYGTEKPLGFYIRDGSSVRVTPHGLEKV 189
Query: 183 QAIFISRLIAKGLAESTGLLAVNDEVIEVNGIEVRGKTLDQVTDMMVANSSNLIITVKPV 362
IFISRL+ GLA+STGLLAVNDEV+EVNGIEV GK+LDQVTDMM+ANS NLIITV+P
Sbjct: 190 PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPA 249
Query: 363 NQ 368
NQ
Sbjct: 250 NQ 251
>sp|Q9Z101|PAR6A_MOUSE Partitioning defective 6 homolog alpha (PAR-6 alpha) (PAR-6A)
(PAR-6)
Length = 346
Score = 146 bits (368), Expect = 8e-35
Identities = 76/119 (63%), Positives = 90/119 (75%), Gaps = 1/119 (0%)
Frame = +3
Query: 15 ISILDDFXXXXXXXXXXXXPVAYRRVKLMRNSS-KPLGFYIRDGVSVRATPNGIEKVQAI 191
IS+ DF P +RRV+L ++ S +PLGFYIRDG+SVR P G+E+V I
Sbjct: 133 ISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGMSVRVAPQGLERVPGI 192
Query: 192 FISRLIAKGLAESTGLLAVNDEVIEVNGIEVRGKTLDQVTDMMVANSSNLIITVKPVNQ 368
FISRL+ GLAESTGLLAV+DE++EVNGIEV GKTLDQVTDMMVANS NLI+TVKP NQ
Sbjct: 193 FISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVANSHNLIVTVKPANQ 251
>sp|Q9NPB6|PAR6A_HUMAN Partitioning defective 6 homolog alpha (PAR-6 alpha) (PAR-6A)
(PAR-6) (PAR6C) (Tax interaction protein 40) (TIP-40)
Length = 346
Score = 146 bits (368), Expect = 8e-35
Identities = 76/119 (63%), Positives = 90/119 (75%), Gaps = 1/119 (0%)
Frame = +3
Query: 15 ISILDDFXXXXXXXXXXXXPVAYRRVKLMRNSS-KPLGFYIRDGVSVRATPNGIEKVQAI 191
IS+ DF P +RRV+L ++ S +PLGFYIRDG+SVR P G+E+V I
Sbjct: 133 ISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGMSVRVAPQGLERVPGI 192
Query: 192 FISRLIAKGLAESTGLLAVNDEVIEVNGIEVRGKTLDQVTDMMVANSSNLIITVKPVNQ 368
FISRL+ GLAESTGLLAV+DE++EVNGIEV GKTLDQVTDMMVANS NLI+TVKP NQ
Sbjct: 193 FISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVANSHNLIVTVKPANQ 251
>sp|Q6B4M5|PAR6A_RAT Partitioning defective 6 homolog alpha (PAR-6 alpha) (PAR-6A)
(PAR-6)
Length = 346
Score = 146 bits (368), Expect = 8e-35
Identities = 76/119 (63%), Positives = 90/119 (75%), Gaps = 1/119 (0%)
Frame = +3
Query: 15 ISILDDFXXXXXXXXXXXXPVAYRRVKLMRNSS-KPLGFYIRDGVSVRATPNGIEKVQAI 191
IS+ DF P +RRV+L ++ S +PLGFYIRDG+SVR P G+E+V I
Sbjct: 133 ISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGMSVRVAPQGLERVPGI 192
Query: 192 FISRLIAKGLAESTGLLAVNDEVIEVNGIEVRGKTLDQVTDMMVANSSNLIITVKPVNQ 368
FISRL+ GLAESTGLLAV+DE++EVNGIEV GKTLDQVTDMMVANS NLI+TVKP NQ
Sbjct: 193 FISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVANSHNLIVTVKPANQ 251
>sp|Q9NAN2|PAR6_CAEEL Partitioning defective 6 protein
Length = 309
Score = 144 bits (363), Expect = 3e-34
Identities = 78/125 (62%), Positives = 90/125 (72%), Gaps = 1/125 (0%)
Frame = +3
Query: 12 NISILDDFXXXXXXXXXXXXPVAYRRVKLMRNSS-KPLGFYIRDGVSVRATPNGIEKVQA 188
+IS +DF P A+RRV+L ++ +PLGFYIRDG SVR T G+ KV
Sbjct: 131 SISNPEDFRQVSAIIDVDIVPEAHRRVRLCKHGQERPLGFYIRDGTSVRVTERGVVKVSG 190
Query: 189 IFISRLIAKGLAESTGLLAVNDEVIEVNGIEVRGKTLDQVTDMMVANSSNLIITVKPVNQ 368
IFISRL+ GLAESTGLL VNDEV+EVNGIEV GKTLDQVTDMMVAN+ NLIITVKP NQ
Sbjct: 191 IFISRLVDGGLAESTGLLGVNDEVLEVNGIEVLGKTLDQVTDMMVANAHNLIITVKPANQ 250
Query: 369 NTCLA 383
L+
Sbjct: 251 RNTLS 255
>sp|Q5RDQ2|MPP5_PONPY MAGUK p55 subfamily member 5
Length = 675
Score = 55.8 bits (133), Expect = 1e-07
Identities = 30/93 (32%), Positives = 51/93 (54%)
Frame = +3
Query: 90 VKLMRNSSKPLGFYIRDGVSVRATPNGIEKVQAIFISRLIAKGLAESTGLLAVNDEVIEV 269
V++ + PLG +R+ ++ ++ ISR++ G AE +GLL DEV+E+
Sbjct: 257 VRIEKARDIPLGATVRN------------EMDSVIISRIVKGGAAEKSGLLHEGDEVLEI 304
Query: 270 NGIEVRGKTLDQVTDMMVANSSNLIITVKPVNQ 368
NGIE+RGK +++V D++ L + P Q
Sbjct: 305 NGIEIRGKDVNEVFDLLADMHGTLTFVLIPSQQ 337
>sp|Q9JLB2|MPP5_MOUSE MAGUK p55 subfamily member 5 (Protein associated with Lin-7 1)
Length = 675
Score = 55.1 bits (131), Expect = 3e-07
Identities = 30/93 (32%), Positives = 51/93 (54%)
Frame = +3
Query: 90 VKLMRNSSKPLGFYIRDGVSVRATPNGIEKVQAIFISRLIAKGLAESTGLLAVNDEVIEV 269
V++ + PLG +R+ ++ ++ ISR++ G AE +GLL DEV+E+
Sbjct: 257 VRIEKARDIPLGATVRN------------EMDSVIISRIVKGGAAEKSGLLHEGDEVLEI 304
Query: 270 NGIEVRGKTLDQVTDMMVANSSNLIITVKPVNQ 368
NGIE+RGK +++V D++ L + P Q
Sbjct: 305 NGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSQQ 337
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,739,309
Number of Sequences: 369166
Number of extensions: 1325926
Number of successful extensions: 3437
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3426
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8598109270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)