Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_L06
(667 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99615|DNJC7_HUMAN DnaJ homolog subfamily C member 7 (Te... 150 3e-36
sp|Q9QYI3|DNJC7_MOUSE DnaJ homolog subfamily C member 7 (Te... 146 4e-35
sp|Q8RH03|DNAJ_FUSNN Chaperone protein dnaJ 84 3e-16
sp|Q70WY6|DNAJ_FUSNP Chaperone protein dnaJ 82 1e-15
sp|P47265|DNAJ_MYCGE Chaperone protein dnaJ 80 4e-15
sp|Q892R1|DNAJ_CLOTE Chaperone protein dnaJ 79 8e-15
sp|Q9R0T3|DNJC3_RAT DnaJ homolog subfamily C member 3 (Inte... 77 3e-14
sp|Q8EUM4|DNAJ_MYCPE Chaperone protein dnaJ 77 4e-14
sp|P78004|DNAJ_MYCPN Chaperone protein dnaJ 77 5e-14
sp|Q72GN6|DNAJ_THET2 Chaperone protein dnaJ 76 9e-14
>sp|Q99615|DNJC7_HUMAN DnaJ homolog subfamily C member 7 (Tetratricopeptide repeat protein
2) (TPR repeat protein 2)
Length = 494
Score = 150 bits (379), Expect = 3e-36
Identities = 81/178 (45%), Positives = 105/178 (58%)
Frame = +3
Query: 3 AFNDCNRALELDPQYIKAMGRRINCLMGLDRYXXXXXXXXXLQKKHPSDENSKLYKQAKL 182
A DC A++LD YIKA RR C M ++Y + + + E+ +L K A+L
Sbjct: 313 AIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTKEHKQLLKNAQL 372
Query: 183 SLKRSKQLDPYTVLGVPKSASEAEIKKGYRKRALLHHPDRHSHADEATRHAEEQKFKEVN 362
LK+SK+ D Y +LGV K+ASE EIKK YRKRAL+HHPDRHS A + EE+KFKEV
Sbjct: 373 ELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVG 432
Query: 363 TAYSVLSDPRKKQMYDSGADIDEVLXXXXXXXXXXXXXXDPMEVFQAFFSSGCGNAGF 536
A+++LSDP+KK YDSG D+DE DP +F+AFF G GF
Sbjct: 433 EAFTILSDPKKKTRYDSGQDLDE--------EGMNMGDFDPNNIFKAFFG---GPGGF 479
>sp|Q9QYI3|DNJC7_MOUSE DnaJ homolog subfamily C member 7 (Tetratricopeptide repeat protein
2) (TPR repeat protein 2) (MDj11)
Length = 494
Score = 146 bits (369), Expect = 4e-35
Identities = 82/189 (43%), Positives = 109/189 (57%), Gaps = 4/189 (2%)
Frame = +3
Query: 3 AFNDCNRALELDPQYIKAMGRRINCLMGLDRYXXXXXXXXXLQKKHPSDENSKLYKQAKL 182
A DC A++LD YIKA RR C M +++ + + + E+ +L K A+L
Sbjct: 313 AIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQFEEAVRDYEKVYQTEKTKEHKQLLKNAQL 372
Query: 183 SLKRSKQLDPYTVLGVPKSASEAEIKKGYRKRALLHHPDRHSHADEATRHAEEQKFKEVN 362
LK+SK+ D Y +LGV K+ASE EIKK YRKRAL+HHPDRHS A + EE+KFKEV
Sbjct: 373 ELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVG 432
Query: 363 TAYSVLSDPRKKQMYDSGADIDEVLXXXXXXXXXXXXXXDPMEVFQAFFSSGCGNAGFKM 542
A+++LSDP+KK YDSG D+DE D +F+AFF G G F+
Sbjct: 433 EAFTILSDPKKKTRYDSGQDLDE--------EGMNMGDFDANNIFKAFF-GGPGGFSFEA 483
Query: 543 ----NFHHQ 557
NF+ Q
Sbjct: 484 SGPGNFYFQ 492
>sp|Q8RH03|DNAJ_FUSNN Chaperone protein dnaJ
Length = 392
Score = 84.0 bits (206), Expect = 3e-16
Identities = 38/68 (55%), Positives = 51/68 (75%)
Frame = +3
Query: 207 DPYTVLGVPKSASEAEIKKGYRKRALLHHPDRHSHADEATRHAEEQKFKEVNTAYSVLSD 386
D Y VLG+ KSASE +IKK YRK A+ +HPD+ ++A +A + E+KFKE+N AY +LSD
Sbjct: 5 DYYEVLGIDKSASENDIKKAYRKAAMKYHPDKFANASDAEKKDAEEKFKEINEAYQILSD 64
Query: 387 PRKKQMYD 410
+KKQ YD
Sbjct: 65 SQKKQQYD 72
>sp|Q70WY6|DNAJ_FUSNP Chaperone protein dnaJ
Length = 394
Score = 82.4 bits (202), Expect = 1e-15
Identities = 39/68 (57%), Positives = 50/68 (73%)
Frame = +3
Query: 207 DPYTVLGVPKSASEAEIKKGYRKRALLHHPDRHSHADEATRHAEEQKFKEVNTAYSVLSD 386
D Y VLGV K+ASE +IKK YRK A+ +HPD+ ++A +A + E+KFKE+N AY VLSD
Sbjct: 5 DYYEVLGVDKNASENDIKKAYRKAAMKYHPDKFANATDAEKKDAEEKFKEINEAYQVLSD 64
Query: 387 PRKKQMYD 410
KKQ YD
Sbjct: 65 NEKKQQYD 72
>sp|P47265|DNAJ_MYCGE Chaperone protein dnaJ
Length = 389
Score = 80.5 bits (197), Expect = 4e-15
Identities = 36/68 (52%), Positives = 49/68 (72%)
Frame = +3
Query: 207 DPYTVLGVPKSASEAEIKKGYRKRALLHHPDRHSHADEATRHAEEQKFKEVNTAYSVLSD 386
D Y VLG+ K+AS +IK+ +RK A+ +HPDRH +E T+ E+KFKEVN AY VLSD
Sbjct: 7 DYYEVLGISKNASSQDIKRAFRKLAMQYHPDRHKAENETTQKQNEEKFKEVNEAYEVLSD 66
Query: 387 PRKKQMYD 410
K+++YD
Sbjct: 67 EEKRKLYD 74
>sp|Q892R1|DNAJ_CLOTE Chaperone protein dnaJ
Length = 375
Score = 79.3 bits (194), Expect = 8e-15
Identities = 45/109 (41%), Positives = 61/109 (55%)
Frame = +3
Query: 207 DPYTVLGVPKSASEAEIKKGYRKRALLHHPDRHSHADEATRHAEEQKFKEVNTAYSVLSD 386
D Y VLGV K A++AEIKK +RK AL +HPD+++ EA E++FKE+N AY VLSD
Sbjct: 5 DFYEVLGVEKGANDAEIKKAFRKLALKYHPDKNAGNKEA-----EERFKEINEAYQVLSD 59
Query: 387 PRKKQMYDSGADIDEVLXXXXXXXXXXXXXXDPMEVFQAFFSSGCGNAG 533
P+K+ YD D D ++F++FF G G G
Sbjct: 60 PQKRAQYDQFGTAD---FNGGGAGFSGFEDFDLGDIFESFFGGGFGGFG 105
>sp|Q9R0T3|DNJC3_RAT DnaJ homolog subfamily C member 3 (Interferon-induced,
double-stranded RNA-activated protein kinase inhibitor)
(Protein kinase inhibitor p58) (Protein kinase inhibitor
of 58 kDa)
Length = 504
Score = 77.4 bits (189), Expect = 3e-14
Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 1/184 (0%)
Frame = +3
Query: 3 AFNDCNRALELDPQYIKAMGRRINCLMGLDRYXXXXXXXXXLQKKHPSDENSKL-YKQAK 179
A C+ L+L+P + A+ R + + Y Q+++ +D+ + ++A+
Sbjct: 325 AIKICSEVLQLEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEQNENDQQIREGLEKAQ 384
Query: 180 LSLKRSKQLDPYTVLGVPKSASEAEIKKGYRKRALLHHPDRHSHADEATRHAEEQKFKEV 359
LK+S++ D Y +LGV ++A + EI K YRK AL HPD +E + E+KF ++
Sbjct: 385 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQSEEE--KKKAEKKFIDI 442
Query: 360 NTAYSVLSDPRKKQMYDSGADIDEVLXXXXXXXXXXXXXXDPMEVFQAFFSSGCGNAGFK 539
A VLSDP ++ +D G D + D + F F S G F+
Sbjct: 443 AAAKEVLSDPEMRRKFDDGEDPLDAETQQGGGSNPFHRSWDSWQGFNPFSSGG----PFR 498
Query: 540 MNFH 551
FH
Sbjct: 499 FKFH 502
>sp|Q8EUM4|DNAJ_MYCPE Chaperone protein dnaJ
Length = 388
Score = 77.0 bits (188), Expect = 4e-14
Identities = 48/123 (39%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Frame = +3
Query: 195 SKQLDPYTVLGVPKSASEAEIKKGYRKRALLHHPDRHSHADEATRHAEEQKFKEVNTAYS 374
S + D Y VLGV K A++ +IK +RK+A+ +HPDR+ D E+KFKEVN AY
Sbjct: 2 SSKRDYYEVLGVSKDATDDQIKSAFRKKAMQYHPDRNKEPD------AEEKFKEVNQAYE 55
Query: 375 VLSDPRKKQMYD----SGADIDEVLXXXXXXXXXXXXXXDPMEVFQAFFSSG-CGNAGFK 539
VLSDP K+ YD G D DP ++F FF G G A F+
Sbjct: 56 VLSDPDKRANYDRFGHEGVD----------GQFGGGAGFDPFDIFNQFFGGGRGGGAHFE 105
Query: 540 MNF 548
+F
Sbjct: 106 QSF 108
>sp|P78004|DNAJ_MYCPN Chaperone protein dnaJ
Length = 390
Score = 76.6 bits (187), Expect = 5e-14
Identities = 36/68 (52%), Positives = 46/68 (67%)
Frame = +3
Query: 207 DPYTVLGVPKSASEAEIKKGYRKRALLHHPDRHSHADEATRHAEEQKFKEVNTAYSVLSD 386
D Y VLGV +SA+ +IK+ +RK A+ +HPDRH E + E+KFKEVN AY VLSD
Sbjct: 7 DYYEVLGVSRSATAQDIKRAFRKLAMQYHPDRHKGEGETVQKQNEEKFKEVNEAYEVLSD 66
Query: 387 PRKKQMYD 410
K+ MYD
Sbjct: 67 TEKRGMYD 74
>sp|Q72GN6|DNAJ_THET2 Chaperone protein dnaJ
Length = 350
Score = 75.9 bits (185), Expect = 9e-14
Identities = 37/70 (52%), Positives = 49/70 (70%)
Frame = +3
Query: 207 DPYTVLGVPKSASEAEIKKGYRKRALLHHPDRHSHADEATRHAEEQKFKEVNTAYSVLSD 386
D Y +LGV + AS+ EIKK YR+ AL +HPDR+ EA E++FKE+N AY+VLSD
Sbjct: 3 DYYAILGVSREASQEEIKKAYRRLALKYHPDRNPGDKEA-----EERFKEINEAYAVLSD 57
Query: 387 PRKKQMYDSG 416
P+K+ YD G
Sbjct: 58 PKKRAAYDRG 67
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,266,759
Number of Sequences: 369166
Number of extensions: 1129048
Number of successful extensions: 4291
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3951
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)