Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_L01
(937 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ULK4|CRSP3_HUMAN CRSP complex subunit 3 (Cofactor requ... 31 4.4
sp|P24307|V143_NPVAC Helicase 30 9.8
sp|P44974|YA05_HAEIN Hypothetical UPF0141 protein HI1005 30 9.8
sp|Q37375|NU4M_ACACA NADH-ubiquinone oxidoreductase chain 4... 30 9.8
sp|Q8WHW9|YCF2_PSINU Protein ycf2 30 9.8
>sp|Q9ULK4|CRSP3_HUMAN CRSP complex subunit 3 (Cofactor required for Sp1 transcriptional
activation subunit 3) (Transcriptional coactivator
CRSP130) (Vitamin D3 receptor-interacting protein complex
130 kDa component) (DRIP130) (Activator-recruited
cofactor 130 kDa component) (ARC130)
Length = 1368
Score = 31.2 bits (69), Expect = 4.4
Identities = 24/102 (23%), Positives = 45/102 (44%)
Frame = -3
Query: 320 FLKKIFSTKNSGAELRPIFIIINQITTKYSYETFII*KLLITYCS*NFSYSIKNIGVKIP 141
FL FST G +L I+N + KY+ T + +L++ C S+ V
Sbjct: 829 FLVYEFSTSAGGQQLNKCIEILNDMVWKYNIVT--LDRLIL--CLAMRSHEGNEAQVCYF 884
Query: 140 IVKIYLNEDHHYVTKNDEYYRRNLLRKYFFNKWLNSCLKYHK 15
I+++ L + + + + ++ + N + N W + YHK
Sbjct: 885 IIQLLLLKPNDFRNRVSDFVKENSPEHWLQNDWHTKHMNYHK 926
>sp|P24307|V143_NPVAC Helicase
Length = 1221
Score = 30.0 bits (66), Expect = 9.8
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 904 MKTNTSIPKYEG*YNVNKFQFKQ*ISNNLRHRWKILSKTTIVIAMIIN 761
+KTNT+I Y G N + + ++N R W + + I +A+ +N
Sbjct: 620 LKTNTAIVNYMGNCNTCQADMRVALNNLFRDLWNLDDENLITLALYVN 667
>sp|P44974|YA05_HAEIN Hypothetical UPF0141 protein HI1005
Length = 519
Score = 30.0 bits (66), Expect = 9.8
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Frame = -3
Query: 323 IFLKKIFSTKNSG---AELRPI--FIIINQITTKYSYETFII*KLLIT--------YCS* 183
+FL IF+ G +E P+ + I+ IT Y T + ++LIT YCS
Sbjct: 19 LFLFSIFTNMGLGNVLSENIPVSDYAILFVITAISFYFTPWLGRILITVLFLSALFYCSA 78
Query: 182 NFSYSIKNIGVKIPIVKIYLNEDHHYVT 99
F Y I ++G+ + + +NE Y T
Sbjct: 79 GFFYGIPSLGIIASVYETNINETLEYYT 106
>sp|Q37375|NU4M_ACACA NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
4)
Length = 497
Score = 30.0 bits (66), Expect = 9.8
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = -3
Query: 362 NVFYNIFM*SINSIFLKKIFSTKNSGAELRPIFIIINQITTKYSYETFII*KLLITY 192
N Y I M +I+ +FL F L PI I+I+ + KY Y +FII + IT+
Sbjct: 84 NFHYVIGMDNISLLFLLLTFF-------LTPICILISWNSIKYRYNSFIICLIFITF 133
>sp|Q8WHW9|YCF2_PSINU Protein ycf2
Length = 2313
Score = 30.0 bits (66), Expect = 9.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -3
Query: 164 KNIGV--KIPIVKIYLNEDHHYVTKNDEYYRRNLLRKYFFNKW 42
+NIG+ K K++++E ND Y+ N + Y FNKW
Sbjct: 412 QNIGIITKNEDPKVFVSESSISNFTNDSYWSLNYYKYYLFNKW 454
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,697,646
Number of Sequences: 369166
Number of extensions: 1886266
Number of successful extensions: 3845
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3843
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9654860130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)