Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_K17
(265 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62255|UB2G1_RAT Ubiquitin-conjugating enzyme E2 G1 (Ubi... 67 1e-11
sp|P34477|UBC7_CAEEL Probable ubiquitin-conjugating enzyme ... 67 1e-11
sp|Q42541|UBCD_ARATH Ubiquitin-conjugating enzyme E2 13 (Ub... 65 5e-11
sp|P42747|UBC14_ARATH Ubiquitin-conjugating enzyme E2 14 (U... 65 6e-11
sp|Q42540|UBC7_ARATH Ubiquitin-conjugating enzyme E2 7 (Ubi... 64 1e-10
sp|Q9Y818|UBC15_SCHPO Ubiquitin-conjugating enzyme E2 15 (U... 63 2e-10
sp|P25868|UBC7_WHEAT Ubiquitin-conjugating enzyme E2 7 (Ubi... 62 4e-10
sp|P14682|UBC3_YEAST Ubiquitin-conjugating enzyme E2-34 kDa... 50 2e-06
sp|P25869|UBC_ASFM2 Ubiquitin-conjugating enzyme E2-21 kDa ... 46 3e-05
sp|P27949|UBC_ASFB7 Ubiquitin-conjugating enzyme E2-21 kDa ... 46 3e-05
>sp|P62255|UB2G1_RAT Ubiquitin-conjugating enzyme E2 G1 (Ubiquitin-protein ligase G1)
(Ubiquitin carrier protein G1) (E217K) (UBC7)
sp|P62254|UB2G1_MOUSE Ubiquitin-conjugating enzyme E2 G1 (Ubiquitin-protein ligase G1)
(Ubiquitin carrier protein G1) (E217K) (UBC7)
sp|P62253|UB2G1_HUMAN Ubiquitin-conjugating enzyme E2 G1 (Ubiquitin-protein ligase G1)
(Ubiquitin carrier protein G1) (E217K) (UBC7)
Length = 170
Score = 67.0 bits (162), Expect = 1e-11
Identities = 34/44 (77%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Frame = +2
Query: 2 SVISMLAEPNADSPANVDAAKDFRENFS-EFKRKVQRCVRRSQE 130
SVISMLA+PN DSPANVDAAK++RE+ + EFKRKV RCVR+SQE
Sbjct: 123 SVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166
>sp|P34477|UBC7_CAEEL Probable ubiquitin-conjugating enzyme E2 7 (Ubiquitin-protein
ligase 7) (Ubiquitin carrier protein 7)
Length = 164
Score = 67.0 bits (162), Expect = 1e-11
Identities = 32/43 (74%), Positives = 38/43 (88%)
Frame = +2
Query: 2 SVISMLAEPNADSPANVDAAKDFRENFSEFKRKVQRCVRRSQE 130
SVISML +PN +SPANVDAAK REN++EFK+KV +CVRRSQE
Sbjct: 121 SVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQE 163
>sp|Q42541|UBCD_ARATH Ubiquitin-conjugating enzyme E2 13 (Ubiquitin-protein ligase 13)
(Ubiquitin carrier protein 13)
Length = 166
Score = 65.1 bits (157), Expect = 5e-11
Identities = 30/45 (66%), Positives = 38/45 (84%)
Frame = +2
Query: 2 SVISMLAEPNADSPANVDAAKDFRENFSEFKRKVQRCVRRSQECF 136
S+ISML+ PN +SPANV+AAK++RE EFK+KV RCVR+SQE F
Sbjct: 122 SIISMLSGPNDESPANVEAAKEWREKRDEFKKKVSRCVRKSQEMF 166
>sp|P42747|UBC14_ARATH Ubiquitin-conjugating enzyme E2 14 (Ubiquitin-protein ligase 14)
(Ubiquitin carrier protein 14) (TAYO29)
Length = 167
Score = 64.7 bits (156), Expect = 6e-11
Identities = 29/43 (67%), Positives = 39/43 (90%)
Frame = +2
Query: 2 SVISMLAEPNADSPANVDAAKDFRENFSEFKRKVQRCVRRSQE 130
S+ISML+ PN +SPANV+AAK++R+N +EF++KV RCVRRSQE
Sbjct: 123 SIISMLSGPNDESPANVEAAKEWRDNRAEFRKKVSRCVRRSQE 165
>sp|Q42540|UBC7_ARATH Ubiquitin-conjugating enzyme E2 7 (Ubiquitin-protein ligase 7)
(Ubiquitin carrier protein 7)
Length = 166
Score = 63.9 bits (154), Expect = 1e-10
Identities = 29/45 (64%), Positives = 38/45 (84%)
Frame = +2
Query: 2 SVISMLAEPNADSPANVDAAKDFRENFSEFKRKVQRCVRRSQECF 136
S+ISML+ PN +SPANV+AAK++R+ EFK+KV RCVR+SQE F
Sbjct: 122 SIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCVRKSQEMF 166
>sp|Q9Y818|UBC15_SCHPO Ubiquitin-conjugating enzyme E2 15 (Ubiquitin-protein ligase 15)
(Ubiquitin carrier protein 15)
Length = 167
Score = 62.8 bits (151), Expect = 2e-10
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +2
Query: 2 SVISMLAEPNADSPANVDAAKDFRENFSEFKRKVQRCVRRSQE 130
SVISML+ PN +SPAN+DAAK+FREN EFK++V+R VRRS E
Sbjct: 123 SVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRSIE 165
>sp|P25868|UBC7_WHEAT Ubiquitin-conjugating enzyme E2 7 (Ubiquitin-protein ligase 7)
(Ubiquitin carrier protein 7)
Length = 168
Score = 62.0 bits (149), Expect = 4e-10
Identities = 28/43 (65%), Positives = 37/43 (86%)
Frame = +2
Query: 2 SVISMLAEPNADSPANVDAAKDFRENFSEFKRKVQRCVRRSQE 130
S+ISML+ PN +SPAN++AAKD+RE EFK+KV+R VR+SQE
Sbjct: 124 SIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRKSQE 166
>sp|P14682|UBC3_YEAST Ubiquitin-conjugating enzyme E2-34 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein) (Cell division control
protein 34)
Length = 295
Score = 49.7 bits (117), Expect = 2e-06
Identities = 21/43 (48%), Positives = 35/43 (81%)
Frame = +2
Query: 2 SVISMLAEPNADSPANVDAAKDFRENFSEFKRKVQRCVRRSQE 130
S++S+L +PN +SPANVDAA D+R+N ++K++V+ V RS++
Sbjct: 127 SIVSLLEDPNINSPANVDAAVDYRKNPEQYKQRVKMEVERSKQ 169
>sp|P25869|UBC_ASFM2 Ubiquitin-conjugating enzyme E2-21 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 213
Score = 45.8 bits (107), Expect = 3e-05
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 6/50 (12%)
Frame = +2
Query: 2 SVISMLAEPNADSPANVDAAKDFR-----ENFSEFKRKVQRCVRRS-QEC 133
SVIS+L EPN DSPANVDAAK +R E+ + +V++ V++S EC
Sbjct: 113 SVISLLNEPNPDSPANVDAAKSYRKYLYKEDLESYPMEVKKTVKKSLDEC 162
>sp|P27949|UBC_ASFB7 Ubiquitin-conjugating enzyme E2-21 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 215
Score = 45.8 bits (107), Expect = 3e-05
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 6/50 (12%)
Frame = +2
Query: 2 SVISMLAEPNADSPANVDAAKDFR-----ENFSEFKRKVQRCVRRS-QEC 133
SVIS+L EPN DSPANVDAAK +R E+ + +V++ V++S EC
Sbjct: 113 SVISLLNEPNPDSPANVDAAKSYRKYVYKEDLESYPMEVKKTVKKSLDEC 162
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,845,639
Number of Sequences: 369166
Number of extensions: 312382
Number of successful extensions: 1089
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1671570150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)