Planarian EST Database


Dr_sW_018_K10

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_018_K10
         (818 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P18298|METK_RAT  S-adenosylmethionine synthetase gamma fo...   368   e-101
sp|P31153|METK_HUMAN  S-adenosylmethionine synthetase gamma ...   366   e-101
sp|P13444|METL_RAT  S-adenosylmethionine synthetase alpha an...   358   1e-98
sp|Q00266|METL_HUMAN  S-adenosylmethionine synthetase alpha ...   355   8e-98
sp|P50305|METK_CAEEL  Probable S-adenosylmethionine syntheta...   339   6e-93
sp|P50306|METL_CAEEL  Probable S-adenosylmethionine syntheta...   336   5e-92
sp|P40320|METK_DROME  S-adenosylmethionine synthetase (Methi...   332   7e-91
sp|Q27522|METN_CAEEL  Probable S-adenosylmethionine syntheta...   330   2e-90
sp|O17680|METM_CAEEL  Probable S-adenosylmethionine syntheta...   329   5e-90
sp|P48466|METK_NEUCR  S-adenosylmethionine synthetase (Methi...   323   5e-88
>sp|P18298|METK_RAT S-adenosylmethionine synthetase gamma form (Methionine
           adenosyltransferase) (AdoMet synthetase) (MAT-II)
          Length = 395

 Score =  368 bits (944), Expect = e-101
 Identities = 181/259 (69%), Positives = 206/259 (79%)
 Frame = +3

Query: 3   LMFGYATDETEELMPLTVVLAHGLNMKLAECRRNGTLPYLRPDTKTQVTVLYKSVQGACV 182
           LMFGYATDETEE MPLT+VLAH LN KLAE RRNGTLP+LRPD+KTQVTV Y   +GA +
Sbjct: 137 LMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAVI 196

Query: 183 PIRVHTVVISTQHDENVSIDQLREDLMCHVVKTVIPEIYLDANTIYHLNPSGRFVIGGPQ 362
           PIRVHT+VIS QHDE V +D++R+ L   ++K V+P  YLD +TIYHL PSGRFVIGGPQ
Sbjct: 197 PIRVHTIVISVQHDEEVCLDEMRDALKEKLIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQ 256

Query: 363 GDAGLTGRKIIVDTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAGLCKRVLV 542
           GDAGLTGRKIIVDTY             KDYTKVDRS AYAARWVAKSLVK GLC+RVLV
Sbjct: 257 GDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLV 316

Query: 543 QLSYAIGIAAPLSIFVDSYGTSSMPDSKLLEIINNNFDLRPGHIEKDLDLRKPIYRRTAC 722
           Q+SYAIG++ PLSI +  YGTS   + +LLEI+ NNFDLRPG I +DLDL+KPIY+RTA 
Sbjct: 317 QVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKNNFDLRPGVIVRDLDLKKPIYQRTAA 376

Query: 723 YGHFGRSEFTWEQPKLLKY 779
           YGHFGR  F WE PK LKY
Sbjct: 377 YGHFGRDSFPWEVPKKLKY 395
>sp|P31153|METK_HUMAN S-adenosylmethionine synthetase gamma form (Methionine
           adenosyltransferase) (AdoMet synthetase) (MAT-II)
          Length = 395

 Score =  366 bits (939), Expect = e-101
 Identities = 181/259 (69%), Positives = 205/259 (79%)
 Frame = +3

Query: 3   LMFGYATDETEELMPLTVVLAHGLNMKLAECRRNGTLPYLRPDTKTQVTVLYKSVQGACV 182
           LMFGYATDETEE MPLT+VLAH LN KLAE RRNGTLP+LRPD+KTQVTV Y   +GA +
Sbjct: 137 LMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAVL 196

Query: 183 PIRVHTVVISTQHDENVSIDQLREDLMCHVVKTVIPEIYLDANTIYHLNPSGRFVIGGPQ 362
           PIRVHT+VIS QHDE V +D++R+ L   V+K V+P  YLD +TIYHL PSGRFVIGGPQ
Sbjct: 197 PIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQ 256

Query: 363 GDAGLTGRKIIVDTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAGLCKRVLV 542
           GDAGLTGRKIIVDTY             KDYTKVDRS AYAARWVAKSLVK GLC+RVLV
Sbjct: 257 GDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLV 316

Query: 543 QLSYAIGIAAPLSIFVDSYGTSSMPDSKLLEIINNNFDLRPGHIEKDLDLRKPIYRRTAC 722
           Q+SYAIG++ PLSI +  YGTS   + +LLEI+  NFDLRPG I +DLDL+KPIY+RTA 
Sbjct: 317 QVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIYQRTAA 376

Query: 723 YGHFGRSEFTWEQPKLLKY 779
           YGHFGR  F WE PK LKY
Sbjct: 377 YGHFGRDSFPWEVPKKLKY 395
>sp|P13444|METL_RAT S-adenosylmethionine synthetase alpha and beta forms (Methionine
           adenosyltransferase) (AdoMet synthetase) (MAT-I/III)
          Length = 397

 Score =  358 bits (919), Expect = 1e-98
 Identities = 174/260 (66%), Positives = 209/260 (80%), Gaps = 1/260 (0%)
 Frame = +3

Query: 3   LMFGYATDETEELMPLTVVLAHGLNMKLAECRRNGTLPYLRPDTKTQVTVLYKSVQGACV 182
           LMFGYATDETEE MPLT+VLAH LN ++A+ RR+G LP+LRPD+KTQVTV Y    GA +
Sbjct: 138 LMFGYATDETEECMPLTIVLAHKLNTRMADLRRSGVLPWLRPDSKTQVTVQYVQDNGAVI 197

Query: 183 PIRVHTVVISTQHDENVSIDQLREDLMCHVVKTVIPEIYLDANTIYHLNPSGRFVIGGPQ 362
           P+RVHT+VIS QH+E+++++ +RE L   V+K V+P  YLD +TIYHL PSGRFVIGGPQ
Sbjct: 198 PVRVHTIVISVQHNEDITLEAMREALKEQVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQ 257

Query: 363 GDAGLTGRKIIVDTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAGLCKRVLV 542
           GDAG+TGRKIIVDTY             KDYTKVDRS AYAARWVAKSLVKAGLC+RVLV
Sbjct: 258 GDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLV 317

Query: 543 QLSYAIGIAAPLSIFVDSYGTSSMPD-SKLLEIINNNFDLRPGHIEKDLDLRKPIYRRTA 719
           Q+SYAIG+A PLSI + +YGTS   +  +LLE++N NFDLRPG I +DLDL+KPIY++TA
Sbjct: 318 QVSYAIGVAEPLSISIFTYGTSKKTERDELLEVVNKNFDLRPGVIVRDLDLKKPIYQKTA 377

Query: 720 CYGHFGRSEFTWEQPKLLKY 779
           CYGHFGRSEF WE PK L +
Sbjct: 378 CYGHFGRSEFPWEVPKKLVF 397
>sp|Q00266|METL_HUMAN S-adenosylmethionine synthetase alpha and beta forms (Methionine
           adenosyltransferase) (AdoMet synthetase) (MAT-I/III)
          Length = 395

 Score =  355 bits (911), Expect = 8e-98
 Identities = 166/259 (64%), Positives = 209/259 (80%)
 Frame = +3

Query: 3   LMFGYATDETEELMPLTVVLAHGLNMKLAECRRNGTLPYLRPDTKTQVTVLYKSVQGACV 182
           LMFGYATDETEE MPLT++LAH LN ++A+ RR+G LP+LRPD+KTQVTV Y    GA +
Sbjct: 137 LMFGYATDETEECMPLTIILAHKLNARMADLRRSGLLPWLRPDSKTQVTVQYMQDNGAVI 196

Query: 183 PIRVHTVVISTQHDENVSIDQLREDLMCHVVKTVIPEIYLDANTIYHLNPSGRFVIGGPQ 362
           P+R+HT+VIS QH+E+++++++R  L   V++ V+P  YLD +T+YHL PSGRFVIGGPQ
Sbjct: 197 PVRIHTIVISVQHNEDITLEEMRRALKEQVIRAVVPAKYLDEDTVYHLQPSGRFVIGGPQ 256

Query: 363 GDAGLTGRKIIVDTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAGLCKRVLV 542
           GDAG+TGRKIIVDTY             KDYTKVDRS AYAARWVAKSLVKAGLC+RVLV
Sbjct: 257 GDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLV 316

Query: 543 QLSYAIGIAAPLSIFVDSYGTSSMPDSKLLEIINNNFDLRPGHIEKDLDLRKPIYRRTAC 722
           Q+SYAIG+A PLSI + +YGTS   + +LL++++ NFDLRPG I +DLDL+KPIY++TAC
Sbjct: 317 QVSYAIGVAEPLSISIFTYGTSQKTERELLDVVHKNFDLRPGVIVRDLDLKKPIYQKTAC 376

Query: 723 YGHFGRSEFTWEQPKLLKY 779
           YGHFGRSEF WE P+ L +
Sbjct: 377 YGHFGRSEFPWEVPRKLVF 395
>sp|P50305|METK_CAEEL Probable S-adenosylmethionine synthetase C06E7.1 (Methionine
           adenosyltransferase) (AdoMet synthetase)
          Length = 404

 Score =  339 bits (869), Expect = 6e-93
 Identities = 167/258 (64%), Positives = 203/258 (78%)
 Frame = +3

Query: 3   LMFGYATDETEELMPLTVVLAHGLNMKLAECRRNGTLPYLRPDTKTQVTVLYKSVQGACV 182
           +MFGYATDETEE MPLT++L+H LN KL E RR+G L ++RPD+KTQVT+ Y S  GACV
Sbjct: 125 IMFGYATDETEEAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKTQVTIEYASEGGACV 184

Query: 183 PIRVHTVVISTQHDENVSIDQLREDLMCHVVKTVIPEIYLDANTIYHLNPSGRFVIGGPQ 362
           P+RVHTVVISTQH  ++S+D LR++L+  V+K VIP   +D  TIYHLNP G F+IGGP 
Sbjct: 185 PLRVHTVVISTQHSPDISLDDLRKELIEKVIKAVIPANLIDDKTIYHLNPCGSFIIGGPM 244

Query: 363 GDAGLTGRKIIVDTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAGLCKRVLV 542
           GDAGLTGRKIIVDTY             KD TKVDRS AYAARWVAKSLVK+GLC+R LV
Sbjct: 245 GDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKSGLCRRCLV 304

Query: 543 QLSYAIGIAAPLSIFVDSYGTSSMPDSKLLEIINNNFDLRPGHIEKDLDLRKPIYRRTAC 722
           Q+SYAIG+A PLS+ V S+GTS++ + +LL+I+N+NFDLRPG I KDLDL+KPIY  TA 
Sbjct: 305 QVSYAIGVAKPLSVMVFSFGTSALNEGELLKIVNDNFDLRPGMIIKDLDLKKPIYEPTAE 364

Query: 723 YGHFGRSEFTWEQPKLLK 776
            GHFG +EF WEQP+ L+
Sbjct: 365 NGHFGHNEFPWEQPRHLQ 382
>sp|P50306|METL_CAEEL Probable S-adenosylmethionine synthetase C06E7.3 (Methionine
           adenosyltransferase) (AdoMet synthetase)
          Length = 404

 Score =  336 bits (861), Expect = 5e-92
 Identities = 166/258 (64%), Positives = 200/258 (77%)
 Frame = +3

Query: 3   LMFGYATDETEELMPLTVVLAHGLNMKLAECRRNGTLPYLRPDTKTQVTVLYKSVQGACV 182
           +MFGYATDETEE MPLT++L+H LN KL E RR+G L ++RPD+KTQVT+ Y S  GACV
Sbjct: 125 IMFGYATDETEEAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKTQVTIEYASEGGACV 184

Query: 183 PIRVHTVVISTQHDENVSIDQLREDLMCHVVKTVIPEIYLDANTIYHLNPSGRFVIGGPQ 362
           P+RVHTVVISTQH  ++S+D LR++L+  V+K VIP   +D  TIYHLNP G F+IGGP 
Sbjct: 185 PLRVHTVVISTQHSPDISLDDLRKELIEKVIKAVIPANLIDDKTIYHLNPCGSFIIGGPM 244

Query: 363 GDAGLTGRKIIVDTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAGLCKRVLV 542
           GDAGLTGRKIIVDTY             KD TKVDRS AYAARWVAKSLVKAGLC+R LV
Sbjct: 245 GDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKAGLCRRCLV 304

Query: 543 QLSYAIGIAAPLSIFVDSYGTSSMPDSKLLEIINNNFDLRPGHIEKDLDLRKPIYRRTAC 722
           Q+SYAIG+A PLS+ V S+GTS++ +  LL I+N+NFDLRPG I K+LDL++PIY  TA 
Sbjct: 305 QVSYAIGVAKPLSVMVFSFGTSALSEEDLLTIVNDNFDLRPGKIIKNLDLKRPIYEPTAE 364

Query: 723 YGHFGRSEFTWEQPKLLK 776
            GHFG + F WEQP+ LK
Sbjct: 365 NGHFGHNNFPWEQPRNLK 382
>sp|P40320|METK_DROME S-adenosylmethionine synthetase (Methionine adenosyltransferase)
           (AdoMet synthetase)
          Length = 408

 Score =  332 bits (851), Expect = 7e-91
 Identities = 168/258 (65%), Positives = 196/258 (75%)
 Frame = +3

Query: 3   LMFGYATDETEELMPLTVVLAHGLNMKLAECRRNGTLPYLRPDTKTQVTVLYKSVQGACV 182
           +MFGYATDETEE MPLTVVLAH LN K+AE RR+    + RPD+KTQVT  Y   QG+ V
Sbjct: 148 IMFGYATDETEECMPLTVVLAHKLNEKIAELRRSDVFWWARPDSKTQVTCEYLFNQGSAV 207

Query: 183 PIRVHTVVISTQHDENVSIDQLREDLMCHVVKTVIPEIYLDANTIYHLNPSGRFVIGGPQ 362
           P RVHT+V+S QH E +S++ LR ++M  VVK VIP  Y+DANTI H+NP G FVIGGP 
Sbjct: 208 PKRVHTIVVSMQHSEKISLETLRSEVMEKVVKVVIPAKYIDANTIVHINPCGLFVIGGPM 267

Query: 363 GDAGLTGRKIIVDTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAGLCKRVLV 542
           GDAGLTGRKIIVDTY             KD+TKVDRS AYAARWVAKSLVKAGLCKR LV
Sbjct: 268 GDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCKRCLV 327

Query: 543 QLSYAIGIAAPLSIFVDSYGTSSMPDSKLLEIINNNFDLRPGHIEKDLDLRKPIYRRTAC 722
           Q+SYAIG+A PLSI V  YGTS     +LL+II  NFDLRPG I KDL+LR+PIY+RT+ 
Sbjct: 328 QVSYAIGLAEPLSITVFDYGTSHKSQKELLDIIRRNFDLRPGKIVKDLNLRQPIYQRTST 387

Query: 723 YGHFGRSEFTWEQPKLLK 776
           YGHFGR+ F+WE+ K L+
Sbjct: 388 YGHFGRAGFSWEEAKPLE 405
>sp|Q27522|METN_CAEEL Probable S-adenosylmethionine synthetase T13A10.11 (Methionine
           adenosyltransferase) (AdoMet synthetase)
          Length = 404

 Score =  330 bits (847), Expect = 2e-90
 Identities = 162/258 (62%), Positives = 203/258 (78%)
 Frame = +3

Query: 3   LMFGYATDETEELMPLTVVLAHGLNMKLAECRRNGTLPYLRPDTKTQVTVLYKSVQGACV 182
           +MFGYATDETEE MPLT++L+H LN KL E RR+G L ++RPD+KTQVT+ Y S  GACV
Sbjct: 125 IMFGYATDETEEAMPLTLLLSHKLNYKLHELRRSGELEWVRPDSKTQVTIEYSSEGGACV 184

Query: 183 PIRVHTVVISTQHDENVSIDQLREDLMCHVVKTVIPEIYLDANTIYHLNPSGRFVIGGPQ 362
           P+RVHTVVISTQH  ++S++ LR++L+  V+K VIP   +D +T+YHLNP G FV+GGP 
Sbjct: 185 PLRVHTVVISTQHSPDISLEDLRKELIEKVIKVVIPGNLIDNDTVYHLNPCGSFVVGGPM 244

Query: 363 GDAGLTGRKIIVDTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAGLCKRVLV 542
           GDAGLTGRKIIVDTY             KD TKVDRS AYAARWVAKSLVKAGLC+R LV
Sbjct: 245 GDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKAGLCRRCLV 304

Query: 543 QLSYAIGIAAPLSIFVDSYGTSSMPDSKLLEIINNNFDLRPGHIEKDLDLRKPIYRRTAC 722
           Q+SYAIG+A PLS+ V S+GTS++ +++LL+I+N+NFDLRPG I K+LDL++ IY  TA 
Sbjct: 305 QVSYAIGVAKPLSVMVFSFGTSALNEAELLKIVNDNFDLRPGMIIKNLDLKRAIYEPTAE 364

Query: 723 YGHFGRSEFTWEQPKLLK 776
            GHFG ++F WEQ + LK
Sbjct: 365 NGHFGHNDFPWEQARKLK 382
>sp|O17680|METM_CAEEL Probable S-adenosylmethionine synthetase C49F5.1 (Methionine
           adenosyltransferase) (AdoMet synthetase)
          Length = 403

 Score =  329 bits (844), Expect = 5e-90
 Identities = 157/258 (60%), Positives = 202/258 (78%)
 Frame = +3

Query: 3   LMFGYATDETEELMPLTVVLAHGLNMKLAECRRNGTLPYLRPDTKTQVTVLYKSVQGACV 182
           +MFGYATDETEE MPLT++L+H +N +L + RRNGTLP++RPD+K+QVT+ Y+S  GA +
Sbjct: 124 IMFGYATDETEETMPLTLILSHKINAELHKLRRNGTLPWVRPDSKSQVTIEYESRHGATI 183

Query: 183 PIRVHTVVISTQHDENVSIDQLREDLMCHVVKTVIPEIYLDANTIYHLNPSGRFVIGGPQ 362
           P+RVHTVV+STQH  +V++++LRE ++  V+K VIP   LD +T++H+NP G F++GGP 
Sbjct: 184 PLRVHTVVVSTQHSPDVTLEKLRETILADVIKKVIPASLLDESTVFHINPCGTFIVGGPM 243

Query: 363 GDAGLTGRKIIVDTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAGLCKRVLV 542
           GDAG+TGRKIIVDTY             KD TKVDRS AYAARWVA SLVKAGL KRVLV
Sbjct: 244 GDAGVTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVATSLVKAGLAKRVLV 303

Query: 543 QLSYAIGIAAPLSIFVDSYGTSSMPDSKLLEIINNNFDLRPGHIEKDLDLRKPIYRRTAC 722
           QLSYAIGIA P+S+ V ++GTS + D +L +I+ ++FDL PG I K+LDL++PIY +TA 
Sbjct: 304 QLSYAIGIAKPISVLVYAFGTSPLTDEELHQIVEDSFDLTPGKIIKELDLKRPIYEKTAE 363

Query: 723 YGHFGRSEFTWEQPKLLK 776
            GHFG SEF WEQPK LK
Sbjct: 364 NGHFGHSEFPWEQPKALK 381
>sp|P48466|METK_NEUCR S-adenosylmethionine synthetase (Methionine adenosyltransferase)
           (AdoMet synthetase)
          Length = 395

 Score =  323 bits (827), Expect = 5e-88
 Identities = 157/260 (60%), Positives = 197/260 (75%), Gaps = 1/260 (0%)
 Frame = +3

Query: 3   LMFGYATDETEELMPLTVVLAHGLNMKLAECRRNGTLPYLRPDTKTQVTVLYKSVQGACV 182
           +MFGYATDET EL PLT++ AH LN  ++  RR+G+LP+LRPDTKTQVT+ YK   GA V
Sbjct: 136 IMFGYATDETPELFPLTLLFAHKLNAAMSAARRDGSLPWLRPDTKTQVTIEYKHDNGAVV 195

Query: 183 PIRVHTVVISTQHDENVSIDQLREDLMCHVVKTVIPEIYLDANTIYHLNPSGRFVIGGPQ 362
           P+RV TVV+S QH   ++ ++LR++++  ++KT IP  YLD  T+YH+ PSG FVIGGPQ
Sbjct: 196 PLRVDTVVVSAQHAPEITTEELRKEILEKIIKTTIPAKYLDEKTVYHIQPSGLFVIGGPQ 255

Query: 363 GDAGLTGRKIIVDTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAGLCKRVLV 542
           GDAGLTGRKIIVDTY             KD++KVDRS AY  RW+AKSLV AGL +R LV
Sbjct: 256 GDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFSKVDRSAAYVGRWIAKSLVAAGLARRALV 315

Query: 543 QLSYAIGIAAPLSIFVDSYGTSSMPDSKLLEIINNNFDLRPGHIEKDLDLRKPIYRRTAC 722
           QLSYAIG+A PLSI+VD+YGTS     +L++II NNFDLRPG I K+LDL KPIY +TA 
Sbjct: 316 QLSYAIGVAEPLSIYVDTYGTSDKTSEELVQIIRNNFDLRPGVIVKELDLAKPIYLQTAK 375

Query: 723 YGHFGRSE-FTWEQPKLLKY 779
            GHFG ++ F+WE+PK LK+
Sbjct: 376 NGHFGTNQSFSWEKPKALKF 395
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,417,944
Number of Sequences: 369166
Number of extensions: 2051189
Number of successful extensions: 5156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4912
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7859674995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)