Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_K09
(367 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O35587|TMEDA_MESAU Transmembrane protein Tmp21 precursor... 52 6e-07
sp|Q9D1D4|TMEDA_MOUSE Transmembrane emp24 domain containing... 51 7e-07
sp|P49755|TMEDA_HUMAN Transmembrane emp24 domain containing... 51 7e-07
sp|Q5RE32|TMEDA_PONPY Transmembrane emp24 domain containing... 51 7e-07
sp|Q63584|TMEDA_RAT Transmembrane emp24 domain containing p... 51 7e-07
sp|Q28735|TMEDA_RABIT Transmembrane emp24 domain containing... 51 7e-07
sp|Q90515|TMEDA_FUGRU Transmembrane emp24 domain containing... 51 7e-07
sp|Q5E971|TMEDA_BOVIN Transmembrane emp24 domain containing... 51 7e-07
sp|P54837|ERV25_YEAST Protein ERV25 precursor 31 0.78
sp|P41846|WBS14_CAEEL WBSCR14 protein homolog (Mlx interactor) 28 5.1
>sp|O35587|TMEDA_MESAU Transmembrane protein Tmp21 precursor (21 kDa transmembrane
trafficking protein) (Integral membrane protein p23)
Length = 219
Score = 51.6 bits (122), Expect = 6e-07
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 3 LFSMACLMGLAIWQVLYLRRYFKSKKLIE 89
+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 191 IFSMLCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q9D1D4|TMEDA_MOUSE Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein)
Length = 219
Score = 51.2 bits (121), Expect = 7e-07
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 3 LFSMACLMGLAIWQVLYLRRYFKSKKLIE 89
+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 191 IFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|P49755|TMEDA_HUMAN Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein) (p24delta) (S31III125) (S31I125)
(Tmp-21-I)
Length = 219
Score = 51.2 bits (121), Expect = 7e-07
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 3 LFSMACLMGLAIWQVLYLRRYFKSKKLIE 89
+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 191 IFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q5RE32|TMEDA_PONPY Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein)
Length = 219
Score = 51.2 bits (121), Expect = 7e-07
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 3 LFSMACLMGLAIWQVLYLRRYFKSKKLIE 89
+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 191 IFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q63584|TMEDA_RAT Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein)
Length = 219
Score = 51.2 bits (121), Expect = 7e-07
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 3 LFSMACLMGLAIWQVLYLRRYFKSKKLIE 89
+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 191 IFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q28735|TMEDA_RABIT Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein) (Integral membrane protein p23)
Length = 219
Score = 51.2 bits (121), Expect = 7e-07
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 3 LFSMACLMGLAIWQVLYLRRYFKSKKLIE 89
+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 191 IFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q90515|TMEDA_FUGRU Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (S31III125)
Length = 213
Score = 51.2 bits (121), Expect = 7e-07
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 3 LFSMACLMGLAIWQVLYLRRYFKSKKLIE 89
+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 185 IFSMFCLIGLATWQVFYLRRFFKAKKLIE 213
>sp|Q5E971|TMEDA_BOVIN Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein)
Length = 219
Score = 51.2 bits (121), Expect = 7e-07
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 3 LFSMACLMGLAIWQVLYLRRYFKSKKLIE 89
+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 191 IFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|P54837|ERV25_YEAST Protein ERV25 precursor
Length = 211
Score = 31.2 bits (69), Expect = 0.78
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 21 LMGLAIWQVLYLRRYFKSKKLI 86
L L +WQV YL+ YFK+K +I
Sbjct: 190 LSSLGVWQVNYLKNYFKTKHII 211
>sp|P41846|WBS14_CAEEL WBSCR14 protein homolog (Mlx interactor)
Length = 1009
Score = 28.5 bits (62), Expect = 5.1
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = -1
Query: 220 NTKRSQLQF----NYRTSFSFYPIKNTHNNKTHTLVHTS 116
+T SQ Q+ +Y T+ SF PI+NT N+ H L HTS
Sbjct: 423 STLSSQPQYATSTHYSTNNSFLPIRNTMTNQ-HHLGHTS 460
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,076,022
Number of Sequences: 369166
Number of extensions: 620257
Number of successful extensions: 1962
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1953
length of database: 68,354,980
effective HSP length: 88
effective length of database: 52,098,300
effective search space used: 1719243900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)