Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_K03
(278 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (He... 65 6e-11
sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (He... 65 6e-11
sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (He... 65 6e-11
sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HS... 60 1e-09
sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein (He... 59 3e-09
sp|P47773|HSP7C_ICTPU Heat shock cognate 71 kDa protein 59 5e-09
sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (He... 58 6e-09
sp|Q05944|HSP70_HYDMA Heat shock 70 kDa protein 58 8e-09
sp|Q9I8F9|HSP71_ORYLA Heat shock 70 kDa protein 1 (HSP70-1) 57 1e-08
sp|P54652|HSP72_HUMAN Heat shock-related 70 kDa protein 2 (... 56 2e-08
>sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|Q71U34|HSP7C_SAGOE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
(Intracellular vitamin D binding protein 1)
Length = 646
Score = 64.7 bits (156), Expect = 6e-11
Identities = 31/67 (46%), Positives = 37/67 (55%)
Frame = +2
Query: 2 WLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQG 181
WLDKNQ A K+EF++ KELEKVCNPI+TK+YQ G
Sbjct: 580 WLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSG 639
Query: 182 PTVEEVD 202
PT+EEVD
Sbjct: 640 PTIEEVD 646
>sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|P63018|HSP7C_RAT Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 64.7 bits (156), Expect = 6e-11
Identities = 31/67 (46%), Positives = 37/67 (55%)
Frame = +2
Query: 2 WLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQG 181
WLDKNQ A K+EF++ KELEKVCNPI+TK+YQ G
Sbjct: 580 WLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSG 639
Query: 182 PTVEEVD 202
PT+EEVD
Sbjct: 640 PTIEEVD 646
>sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 64.7 bits (156), Expect = 6e-11
Identities = 31/67 (46%), Positives = 37/67 (55%)
Frame = +2
Query: 2 WLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQG 181
WLDKNQ A K+EF++ KELEKVCNPI+TK+YQ G
Sbjct: 580 WLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSG 639
Query: 182 PTVEEVD 202
PT+EEVD
Sbjct: 640 PTIEEVD 646
>sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HSP70)
Length = 651
Score = 60.5 bits (145), Expect = 1e-09
Identities = 31/72 (43%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = +2
Query: 2 WLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ-----XXXXXXXXXXXXXXXXXXXXXX 166
WLDKNQ A K+E+++H KELEKVCNPI+TK+YQ
Sbjct: 580 WLDKNQTAEKEEYEHHQKELEKVCNPIITKLYQGAGGMPGGMPEGMAGGFPGAGGAAPGG 639
Query: 167 XXKQGPTVEEVD 202
GPT+EEVD
Sbjct: 640 GGSSGPTIEEVD 651
>sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 650
Score = 58.9 bits (141), Expect = 3e-09
Identities = 31/71 (43%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +2
Query: 2 WLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ----XXXXXXXXXXXXXXXXXXXXXXX 169
WLDKNQ A K+EF++ KELEKVCNPI+TK+YQ
Sbjct: 580 WLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGMPGGFPGGGAPPSGG 639
Query: 170 XKQGPTVEEVD 202
GPT+EEVD
Sbjct: 640 ASSGPTIEEVD 650
>sp|P47773|HSP7C_ICTPU Heat shock cognate 71 kDa protein
Length = 649
Score = 58.5 bits (140), Expect = 5e-09
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 2 WLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ---XXXXXXXXXXXXXXXXXXXXXXXX 172
WLDKNQ A KDE+++ K+LEKVCNPI+TK+YQ
Sbjct: 580 WLDKNQTAEKDEYEHQQKDLEKVCNPIITKLYQSDGGMPGGMPDGMPGGFQELGAAPGGG 639
Query: 173 KQGPTVEEVD 202
GPT+EEVD
Sbjct: 640 SSGPTIEEVD 649
>sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 649
Score = 58.2 bits (139), Expect = 6e-09
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 2 WLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ---XXXXXXXXXXXXXXXXXXXXXXXX 172
WLDKNQ A ++EF++ KELEKVCNPI+TK+YQ
Sbjct: 580 WLDKNQTAEREEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPEGMPGGFPGAGAAPGGG 639
Query: 173 KQGPTVEEVD 202
GPT+EEVD
Sbjct: 640 SSGPTIEEVD 649
>sp|Q05944|HSP70_HYDMA Heat shock 70 kDa protein
Length = 654
Score = 57.8 bits (138), Expect = 8e-09
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +2
Query: 2 WLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQ- 178
W+DKNQ A KD++++ KELEKVCNPI+TK+YQ
Sbjct: 587 WVDKNQTAEKDQYEHKQKELEKVCNPIITKLYQAGGGMPGGMPGGMPGGMPGSGSKASSG 646
Query: 179 GPTVEEVD 202
GPT+EEVD
Sbjct: 647 GPTIEEVD 654
>sp|Q9I8F9|HSP71_ORYLA Heat shock 70 kDa protein 1 (HSP70-1)
Length = 639
Score = 57.0 bits (136), Expect = 1e-08
Identities = 30/67 (44%), Positives = 36/67 (53%)
Frame = +2
Query: 2 WLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQG 181
WL+ NQ A KDEF + KELEKVCNPI++K+YQ QG
Sbjct: 582 WLENNQLADKDEFQHKQKELEKVCNPIISKLYQ---------GGMPSGSCREQARADSQG 632
Query: 182 PTVEEVD 202
PT+EEVD
Sbjct: 633 PTIEEVD 639
>sp|P54652|HSP72_HUMAN Heat shock-related 70 kDa protein 2 (Heat shock 70 kDa protein 2)
Length = 639
Score = 56.2 bits (134), Expect = 2e-08
Identities = 28/67 (41%), Positives = 37/67 (55%)
Frame = +2
Query: 2 WLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQG 181
WLD+NQ A KDE+++ KELE+VCNPI++K+YQ G
Sbjct: 583 WLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ----------GGPGGGSGGGGSGASGG 632
Query: 182 PTVEEVD 202
PT+EEVD
Sbjct: 633 PTIEEVD 639
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,322,546
Number of Sequences: 369166
Number of extensions: 114660
Number of successful extensions: 534
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 68,354,980
effective HSP length: 62
effective length of database: 56,901,410
effective search space used: 1707042300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)