Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_K02-2
(565 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O35986|ZN265_RAT Zinc finger protein 265 (Zinc finger, s... 94 2e-19
sp|O95218|ZN265_HUMAN Zinc finger protein 265 (Zinc finger,... 94 2e-19
sp|Q9R020|ZN265_MOUSE Zinc finger protein 265 (Zinc finger,... 92 7e-19
sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor 38 0.015
sp|Q27294|CAZ_DROME RNA-binding protein cabeza (Sarcoma-ass... 33 0.49
sp|Q04931|SSRP_RAT Structure-specific recognition protein 1... 31 1.9
sp|Q59KF3|SPB1_CANAL AdoMet-dependent rRNA methyltransferas... 31 2.4
sp|Q08943|SSRP_MOUSE Structure-specific recognition protein... 30 3.2
sp|P31380|YAB9_YEAST Hypothetical 128.5 kDa helicase in ATS... 30 4.1
sp|Q58141|Y731_METJA Hypothetical protein MJ0731 30 5.4
>sp|O35986|ZN265_RAT Zinc finger protein 265 (Zinc finger, splicing)
Length = 332
Score = 94.0 bits (232), Expect = 2e-19
Identities = 43/62 (69%), Positives = 49/62 (79%)
Frame = +2
Query: 5 NINWARRTACNICNTSKVNTQGQRTGYGGGFYEREETVEYIDRNDSDDEYDEFGMKKKKY 184
N+NWARR+ CN+CNT K +RTGYGGGF ER E VEYI+R +SD EYDEFG KKKKY
Sbjct: 76 NVNWARRSECNMCNTPKYAKLEERTGYGGGFNER-ENVEYIEREESDGEYDEFGRKKKKY 134
Query: 185 RG 190
RG
Sbjct: 135 RG 136
>sp|O95218|ZN265_HUMAN Zinc finger protein 265 (Zinc finger, splicing)
Length = 337
Score = 94.0 bits (232), Expect = 2e-19
Identities = 43/62 (69%), Positives = 49/62 (79%)
Frame = +2
Query: 5 NINWARRTACNICNTSKVNTQGQRTGYGGGFYEREETVEYIDRNDSDDEYDEFGMKKKKY 184
N+NWARR+ CN+CNT K +RTGYGGGF ER E VEYI+R +SD EYDEFG KKKKY
Sbjct: 76 NVNWARRSECNMCNTPKYAKLEERTGYGGGFNER-ENVEYIEREESDGEYDEFGRKKKKY 134
Query: 185 RG 190
RG
Sbjct: 135 RG 136
>sp|Q9R020|ZN265_MOUSE Zinc finger protein 265 (Zinc finger, splicing)
Length = 326
Score = 92.4 bits (228), Expect = 7e-19
Identities = 42/62 (67%), Positives = 50/62 (80%)
Frame = +2
Query: 5 NINWARRTACNICNTSKVNTQGQRTGYGGGFYEREETVEYIDRNDSDDEYDEFGMKKKKY 184
N+NWARR+ C++CNT K +RTGYGGGF ER E+VEYI+R +SD EYDEFG KKKKY
Sbjct: 76 NVNWARRSECDMCNTPKYAKLEERTGYGGGFNER-ESVEYIEREESDGEYDEFGRKKKKY 134
Query: 185 RG 190
RG
Sbjct: 135 RG 136
>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor
Length = 351
Score = 38.1 bits (87), Expect = 0.015
Identities = 18/77 (23%), Positives = 28/77 (36%)
Frame = -3
Query: 377 YHHSHRLPKDHI*TNLHHHYPLRVHQHXXXXXXXXXXXX*NQHPNLFRLNHHFYYFHYLE 198
+HH H P H + HHH P H H + H + HH ++ H+ +
Sbjct: 197 HHHHHHAPHHH---HHHHHAPHHHHHHHHGHHHHHHHHHGHHHHHHHHHGHHHHHHHHHD 253
Query: 197 SNGHDIFSFSCQTHRIH 147
++ H H H
Sbjct: 254 AHHHHHHHHDAHHHHHH 270
Score = 35.4 bits (80), Expect = 0.098
Identities = 19/83 (22%), Positives = 29/83 (34%)
Frame = -3
Query: 377 YHHSHRLPKDHI*TNLHHHYPLRVHQHXXXXXXXXXXXX*NQHPNLFRLNHHFYYFHYLE 198
+HH H P H HH+ H H + P+ +HH ++ H+
Sbjct: 177 HHHHHHAPHHH------HHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHGHHHHHHH 230
Query: 197 SNGHDIFSFSCQTHRIHRLNHCD 129
+GH H H +H D
Sbjct: 231 HHGHHHHHHHHHGHHHHHHHHHD 253
Score = 34.7 bits (78), Expect = 0.17
Identities = 22/99 (22%), Positives = 31/99 (31%)
Frame = -3
Query: 377 YHHSHRLPKDHI*TNLHHHYPLRVHQHXXXXXXXXXXXX*NQHPNLFRLNHHFYYFHYLE 198
+HH H P H HHH+ H H + H +HH + H
Sbjct: 102 HHHHHHPPHHHHHLGHHHHHHHAAHHHHHEEHHHHHHAAHHHHHEEHHHHHHAAHHHPWF 161
Query: 197 SNGHDIFSFSCQTHRIHRLNHCDQCIQPFLPFHKIHLHN 81
+ H + H H +H P H H H+
Sbjct: 162 HHHHLGYHHHHAPHHHHHHHHA--------PHHHHHHHH 192
Score = 33.1 bits (74), Expect = 0.49
Identities = 18/81 (22%), Positives = 28/81 (34%)
Frame = -3
Query: 377 YHHSHRLPKDHI*TNLHHHYPLRVHQHXXXXXXXXXXXX*NQHPNLFRLNHHFYYFHYLE 198
+HH H H + HHH+ H H + P+ +HH + H+
Sbjct: 161 FHHHHLGYHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHH 220
Query: 197 SNGHDIFSFSCQTHRIHRLNH 135
+GH H H +H
Sbjct: 221 HHGHHHHHHHHHGHHHHHHHH 241
Score = 30.8 bits (68), Expect = 2.4
Identities = 20/99 (20%), Positives = 30/99 (30%)
Frame = -3
Query: 377 YHHSHRLPKDHI*TNLHHHYPLRVHQHXXXXXXXXXXXX*NQHPNLFRLNHHFYYFHYLE 198
+HH H H HHH+ H + H + +HH + H+
Sbjct: 224 HHHHHHHHHGH-----HHHHHHHHGHHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHH 278
Query: 197 SNGHDIFSFSCQTHRIHRLNHCDQCIQPFLPFHKIHLHN 81
+ HD H H +H H H H+
Sbjct: 279 HHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHDAHHHH 317
Score = 30.8 bits (68), Expect = 2.4
Identities = 21/99 (21%), Positives = 32/99 (32%)
Frame = -3
Query: 377 YHHSHRLPKDHI*TNLHHHYPLRVHQHXXXXXXXXXXXX*NQHPNLFRLNHHFYYFHYLE 198
+HH H H + HHH+ H H + H + +HH + H+
Sbjct: 245 HHHHHH----HHDAHHHHHHHHDAHHH------------HHHHHDAHHHHHHHHDAHHHH 288
Query: 197 SNGHDIFSFSCQTHRIHRLNHCDQCIQPFLPFHKIHLHN 81
+ HD H H +H H H H+
Sbjct: 289 HHHHDAHHHHHHHHDAHHHHHHHDAHHHHHHHHDAHHHH 327
Score = 30.4 bits (67), Expect = 3.2
Identities = 18/81 (22%), Positives = 27/81 (33%)
Frame = -3
Query: 377 YHHSHRLPKDHI*TNLHHHYPLRVHQHXXXXXXXXXXXX*NQHPNLFRLNHHFYYFHYLE 198
+HH H H HHH+ H H + H + +HH + H+
Sbjct: 278 HHHHHDAHHHH-----HHHHDAHHHHH-----HHHDAHHHHHHHDAHHHHHHHHDAHHHH 327
Query: 197 SNGHDIFSFSCQTHRIHRLNH 135
+ HD H H +H
Sbjct: 328 HHHHDAHHHHHHHHDAHHHHH 348
Score = 30.0 bits (66), Expect = 4.1
Identities = 18/81 (22%), Positives = 27/81 (33%)
Frame = -3
Query: 377 YHHSHRLPKDHI*TNLHHHYPLRVHQHXXXXXXXXXXXX*NQHPNLFRLNHHFYYFHYLE 198
+HH H H + HHH+ H H + H +HH + H+
Sbjct: 266 HHHHHHHDAHH---HHHHHHDAHHHHHHHHDAHHHHHHHHDAHH-----HHHHHDAHHHH 317
Query: 197 SNGHDIFSFSCQTHRIHRLNH 135
+ HD H H +H
Sbjct: 318 HHHHDAHHHHHHHHDAHHHHH 338
Score = 29.6 bits (65), Expect = 5.4
Identities = 18/81 (22%), Positives = 27/81 (33%)
Frame = -3
Query: 377 YHHSHRLPKDHI*TNLHHHYPLRVHQHXXXXXXXXXXXX*NQHPNLFRLNHHFYYFHYLE 198
+HH H H + HHH+ H H H + +HH + H+
Sbjct: 206 HHHHHHHAPHH---HHHHHHGHHHHHHHHHGHHHHHHHHHGHHHH----HHHHHDAHHHH 258
Query: 197 SNGHDIFSFSCQTHRIHRLNH 135
+ HD H H +H
Sbjct: 259 HHHHDAHHHHHHHHDAHHHHH 279
Score = 29.3 bits (64), Expect = 7.0
Identities = 20/99 (20%), Positives = 32/99 (32%)
Frame = -3
Query: 377 YHHSHRLPKDHI*TNLHHHYPLRVHQHXXXXXXXXXXXX*NQHPNLFRLNHHFYYFHYLE 198
+HH + H + HHH H H + H HH + H+ E
Sbjct: 79 HHHPEEHHEPHHEEHHHHHPHPHHHHHHHPPHHHHHLGHHHHH-------HHAAHHHHHE 131
Query: 197 SNGHDIFSFSCQTHRIHRLNHCDQCIQPFLPFHKIHLHN 81
+ H + H H +H P+ H + H+
Sbjct: 132 EHHHHHHAAHHHHHEEHHHHHHAAHHHPWFHHHHLGYHH 170
Score = 29.3 bits (64), Expect = 7.0
Identities = 18/81 (22%), Positives = 27/81 (33%)
Frame = -3
Query: 377 YHHSHRLPKDHI*TNLHHHYPLRVHQHXXXXXXXXXXXX*NQHPNLFRLNHHFYYFHYLE 198
+HH H H HHH+ H H + H + +HH + H+
Sbjct: 215 HHHHHHHHGHH-----HHHHHHHGHHHHHHHHHGHHHHHHHHH-DAHHHHHHHHDAHHHH 268
Query: 197 SNGHDIFSFSCQTHRIHRLNH 135
+ HD H H +H
Sbjct: 269 HHHHDAHHHHHHHHDAHHHHH 289
>sp|Q27294|CAZ_DROME RNA-binding protein cabeza (Sarcoma-associated RNA-binding fly
homolog) (P19)
Length = 399
Score = 33.1 bits (74), Expect = 0.49
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 5 NINWARRTACNICNTSKVNTQGQRTGYGGGFY 100
N N+A R CN C T K + +G G GGG Y
Sbjct: 286 NTNFAWRNECNRCKTPKGDDEGSSGGGGGGGY 317
>sp|Q04931|SSRP_RAT Structure-specific recognition protein 1 (SSRP1) (Recombination
signal sequence recognition protein) (T160)
Length = 561
Score = 31.2 bits (69), Expect = 1.9
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 24/99 (24%)
Frame = +2
Query: 8 INWARRTACNICNTSKVNTQGQRTGYGGGFYEREETVE---------------------- 121
+N+AR T S++ T+ Q T Y EREE +
Sbjct: 229 VNFARATTTTRSFDSEIETK-QGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGIN 287
Query: 122 --YIDRNDSDDEYDEFGMKKKKYRGHLTQDNENNKNDDS 232
Y D DSD++ + +++ K G + ++N N+ +DDS
Sbjct: 288 PGYDDYADSDEDQHDAYLERMKEEGKIREENANDSSDDS 326
>sp|Q59KF3|SPB1_CANAL AdoMet-dependent rRNA methyltransferase SPB1 (2'-O-ribose RNA
methyltransferase) (S-adenosyl-L-methionine-dependent
methyltransferase)
Length = 845
Score = 30.8 bits (68), Expect = 2.4
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 38 ICNTSKVNTQGQRTGYGGGFYEREETVEYIDRNDSDDEYDEFGMKKKKYRGHLTQDNENN 217
I N K ++Q QR GY G Y T+ +D DD ++ G K+ +D++N+
Sbjct: 236 IFNPEKFSSQRQRQGYQEGDYTLFHTMPIMDFIKQDDPINQLG-SLNKFDLPAPKDDDND 294
Query: 218 KND 226
+D
Sbjct: 295 DDD 297
>sp|Q08943|SSRP_MOUSE Structure-specific recognition protein 1 (SSRP1) (Recombination
signal sequence recognition protein) (T160)
Length = 708
Score = 30.4 bits (67), Expect = 3.2
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 122 YIDRNDSDDEYDEFGMKKKKYRGHLTQDNENNKNDDS 232
Y D DSD++ + +++ K G + ++N N+ +DDS
Sbjct: 438 YDDYADSDEDQHDAYLERMKEEGKIREENANDSSDDS 474
>sp|P31380|YAB9_YEAST Hypothetical 128.5 kDa helicase in ATS1-TPD3 intergenic region
Length = 1131
Score = 30.0 bits (66), Expect = 4.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 95 FYEREETVEYIDRNDSDDEYDEFGMKKK 178
+ + EE VEY D +D DD+ DEF +K
Sbjct: 512 YNDEEEDVEYDDGDDDDDDDDEFVATRK 539
>sp|Q58141|Y731_METJA Hypothetical protein MJ0731
Length = 198
Score = 29.6 bits (65), Expect = 5.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 218 YYFHYLESNGHDIFSFSCQTHRIHRLNHCDQCIQ 117
Y +YL+ G ++ FS +I+ HCD CI+
Sbjct: 21 YALNYLKEKGAEVRYFSVSRKKINFCLHCDYCIK 54
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,268,460
Number of Sequences: 369166
Number of extensions: 677463
Number of successful extensions: 3030
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2949
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4078830820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)