Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_K01
(313 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49962|SRP09_MOUSE Signal recognition particle 9 kDa pro... 99 3e-21
sp|P49458|SRP09_HUMAN Signal recognition particle 9 kDa pro... 99 4e-21
sp|P21262|SRP09_CANFA Signal recognition particle 9 kDa pro... 99 4e-21
sp|P34642|SRP09_CAEEL Signal recognition particle 9 kDa pro... 94 7e-20
sp|Q9VSC1|SRP09_DROME Signal recognition particle 9 kDa pro... 79 3e-15
sp|O04438|SRP09_MAIZE Signal recognition particle 9 kDa pro... 79 4e-15
sp|Q9SMU7|SRP09_ARATH Signal recognition particle 9 kDa pro... 77 9e-15
sp|O51830|TRME_BUCMP Probable tRNA modification GTPase trmE 30 2.3
sp|Q58436|COAD_METJA Phosphopantetheine adenylyltransferase... 29 3.8
sp|O13804|YE07_SCHPO Hypothetical protein C17H9.07 in chrom... 28 5.0
>sp|P49962|SRP09_MOUSE Signal recognition particle 9 kDa protein (SRP9)
Length = 86
Score = 99.0 bits (245), Expect = 3e-21
Identities = 50/76 (65%), Positives = 56/76 (73%)
Frame = +3
Query: 3 MTYLNSWEEFEKAAEKLYLADPSKCRVCTKYRHLDGVLVIKVTDDSVALKYKTELAQDVK 182
M +WEEF +AAEKLYLADP K RV KYRH+DG L IKVTDD V L Y+T+ AQDVK
Sbjct: 1 MPQFQTWEEFSRAAEKLYLADPMKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVK 60
Query: 183 KIEKLSSLLMRHMASK 230
KIEK S LMR M +K
Sbjct: 61 KIEKFHSQLMRLMVAK 76
>sp|P49458|SRP09_HUMAN Signal recognition particle 9 kDa protein (SRP9)
Length = 86
Score = 98.6 bits (244), Expect = 4e-21
Identities = 50/76 (65%), Positives = 55/76 (72%)
Frame = +3
Query: 3 MTYLNSWEEFEKAAEKLYLADPSKCRVCTKYRHLDGVLVIKVTDDSVALKYKTELAQDVK 182
M +WEEF +AAEKLYLADP K RV KYRH DG L +KVTDD V L YKT+ AQDVK
Sbjct: 1 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVK 60
Query: 183 KIEKLSSLLMRHMASK 230
KIEK S LMR M +K
Sbjct: 61 KIEKFHSQLMRLMVAK 76
>sp|P21262|SRP09_CANFA Signal recognition particle 9 kDa protein (SRP9)
Length = 86
Score = 98.6 bits (244), Expect = 4e-21
Identities = 50/76 (65%), Positives = 55/76 (72%)
Frame = +3
Query: 3 MTYLNSWEEFEKAAEKLYLADPSKCRVCTKYRHLDGVLVIKVTDDSVALKYKTELAQDVK 182
M +WEEF +AAEKLYLADP K RV KYRH DG L IKVTDD V L Y+T+ AQDVK
Sbjct: 1 MAQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGSLCIKVTDDLVCLVYRTDQAQDVK 60
Query: 183 KIEKLSSLLMRHMASK 230
KIEK S LMR M +K
Sbjct: 61 KIEKFHSQLMRLMVAK 76
>sp|P34642|SRP09_CAEEL Signal recognition particle 9 kDa protein homolog (SRP9)
Length = 76
Score = 94.4 bits (233), Expect = 7e-20
Identities = 44/76 (57%), Positives = 56/76 (73%)
Frame = +3
Query: 3 MTYLNSWEEFEKAAEKLYLADPSKCRVCTKYRHLDGVLVIKVTDDSVALKYKTELAQDVK 182
MTY SW+EF KAAE+L+ A+P KCR TKY H G LV+K+TDD V L+Y T QDVK
Sbjct: 1 MTYFTSWDEFAKAAERLHSANPEKCRFVTKYNHTKGQLVLKLTDDVVCLQYSTNQLQDVK 60
Query: 183 KIEKLSSLLMRHMASK 230
K+EKLSS L+R + ++
Sbjct: 61 KLEKLSSTLLRGIVTQ 76
>sp|Q9VSC1|SRP09_DROME Signal recognition particle 9 kDa protein homolog (SRP9)
Length = 77
Score = 79.0 bits (193), Expect = 3e-15
Identities = 34/76 (44%), Positives = 54/76 (71%)
Frame = +3
Query: 3 MTYLNSWEEFEKAAEKLYLADPSKCRVCTKYRHLDGVLVIKVTDDSVALKYKTELAQDVK 182
M ++ +W++FE A E +YLA+P CR+ KY H G +++K+TD+ ++YK E D++
Sbjct: 1 MVFVKNWDDFEIAVENMYLANPQNCRLTMKYAHSKGHILLKMTDNVKCVQYKAENMPDLR 60
Query: 183 KIEKLSSLLMRHMASK 230
KIEK++S L+ HMASK
Sbjct: 61 KIEKITSNLVGHMASK 76
>sp|O04438|SRP09_MAIZE Signal recognition particle 9 kDa protein (SRP9)
Length = 103
Score = 78.6 bits (192), Expect = 4e-15
Identities = 36/73 (49%), Positives = 51/73 (69%)
Frame = +3
Query: 3 MTYLNSWEEFEKAAEKLYLADPSKCRVCTKYRHLDGVLVIKVTDDSVALKYKTELAQDVK 182
M Y++SWEEF + + +L+ DP+ R KYRH +G LV+KVTDD LK+KT+ AQD K
Sbjct: 1 MVYVDSWEEFVERSVQLFRGDPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAK 60
Query: 183 KIEKLSSLLMRHM 221
K+EKL+++ M
Sbjct: 61 KMEKLNNIFFALM 73
>sp|Q9SMU7|SRP09_ARATH Signal recognition particle 9 kDa protein (SRP9)
Length = 103
Score = 77.4 bits (189), Expect = 9e-15
Identities = 36/74 (48%), Positives = 50/74 (67%)
Frame = +3
Query: 3 MTYLNSWEEFEKAAEKLYLADPSKCRVCTKYRHLDGVLVIKVTDDSVALKYKTELAQDVK 182
M Y+ SW+EF + +L+ ADP R KYRH DG LV+KVTD+ LK+KT+ AQ+ K
Sbjct: 1 MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60
Query: 183 KIEKLSSLLMRHMA 224
K+EKL+++ MA
Sbjct: 61 KMEKLNNIFFTLMA 74
>sp|O51830|TRME_BUCMP Probable tRNA modification GTPase trmE
Length = 453
Score = 29.6 bits (65), Expect = 2.3
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +3
Query: 18 SWEEFEKAAEKLYLADPS-----KCRVCTKYRHLDGVLVIKVTDDSVALKYKTELAQDVK 182
+WE +KA L++ D + + ++C ++ V I++T + K +L QD
Sbjct: 289 AWEVIKKADHVLFVIDKTTKQSEQKKICNEFIQNISVNNIQIT----FILNKNDLVQDKF 344
Query: 183 KIEKLSSLLMRHMASKT 233
EK+ SLL +++++T
Sbjct: 345 NTEKIESLLFINISART 361
>sp|Q58436|COAD_METJA Phosphopantetheine adenylyltransferase (Pantetheine-phosphate
adenylyltransferase) (PPAT) (Dephospho-CoA
pyrophosphorylase)
Length = 147
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 108 GVLVIKVTDDSVALKYKTELAQDVK-KIEKLSSLL 209
G L I +T D A KYKT D+K +IE L L
Sbjct: 27 GKLTIGITSDEFAKKYKTHKINDLKTRIENLKKFL 61
>sp|O13804|YE07_SCHPO Hypothetical protein C17H9.07 in chromosome I
Length = 120
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +3
Query: 3 MTYLNSWEEFEKAAEKLYLADPSKCRVCTKYR---HLDGVLVIKVTDDS--VALKYKTEL 167
M YL + EF ++ L A P ++ KYR L+ K + + + LKY+T+
Sbjct: 1 MVYLQTVNEFFTQSKSLTEAYPKTTKLSIKYRTNEQSQNYLIAKAFESASGICLKYRTDK 60
Query: 168 AQDVKKIEKLSSLL 209
A ++ ++ +++ L
Sbjct: 61 AAELGRLLLIANKL 74
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,639,782
Number of Sequences: 369166
Number of extensions: 497833
Number of successful extensions: 1367
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 68,354,980
effective HSP length: 72
effective length of database: 55,054,060
effective search space used: 1706675860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)