Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_J10
(624 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolip... 42 0.001
sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolip... 41 0.002
sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolip... 41 0.002
sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolip... 41 0.002
sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolip... 39 0.008
sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolip... 39 0.011
sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid... 39 0.011
sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolip... 39 0.011
sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolip... 39 0.011
sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolip... 37 0.041
>sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolipid subunit (Ductin) (VHA16K)
Length = 159
Score = 42.0 bits (97), Expect = 0.001
Identities = 35/85 (41%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
Frame = +2
Query: 107 MKSLIPVVMAGIIAIYWYNL------PYENPLR--------HLEAGLRLP-*WIASWFCN 241
MKS+IPVVMAGIIAIY + E P + HL AGL + +A+ F
Sbjct: 55 MKSIIPVVMAGIIAIYGLVVAVLIAGALEEPSKYSLYRGFIHLGAGLAVGFSGLAAGFAI 114
Query: 242 RICW*CWCSGTAPHPRLFAGLFLFL 316
I GTA PRLF G+ L L
Sbjct: 115 GIVGDAGVRGTAQQPRLFVGMILIL 139
Score = 35.4 bits (80), Expect = 0.12
Identities = 17/24 (70%), Positives = 17/24 (70%)
Frame = +3
Query: 216 SGLPAGFAIGFVGDAGVRELPHTP 287
SGL AGFAIG VGDAGVR P
Sbjct: 106 SGLAAGFAIGIVGDAGVRGTAQQP 129
>sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 41.2 bits (95), Expect = 0.002
Identities = 34/86 (39%), Positives = 39/86 (45%), Gaps = 16/86 (18%)
Frame = +2
Query: 107 MKSLIPVVMAGIIAIYWY---------------NLPYENPLRHLEAGLRLP-*WIASWFC 238
MKS+IPVVMAGIIAIY N HL AGL + +A+ F
Sbjct: 50 MKSIIPVVMAGIIAIYGLVVAVLIAGSLDSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFA 109
Query: 239 NRICW*CWCSGTAPHPRLFAGLFLFL 316
I GTA PRLF G+ L L
Sbjct: 110 IGIVGDAGVRGTAQQPRLFVGMILIL 135
Score = 35.4 bits (80), Expect = 0.12
Identities = 17/24 (70%), Positives = 17/24 (70%)
Frame = +3
Query: 216 SGLPAGFAIGFVGDAGVRELPHTP 287
SGL AGFAIG VGDAGVR P
Sbjct: 102 SGLAAGFAIGIVGDAGVRGTAQQP 125
>sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 41.2 bits (95), Expect = 0.002
Identities = 34/86 (39%), Positives = 39/86 (45%), Gaps = 16/86 (18%)
Frame = +2
Query: 107 MKSLIPVVMAGIIAIYWY---------------NLPYENPLRHLEAGLRLP-*WIASWFC 238
MKS+IPVVMAGIIAIY N HL AGL + +A+ F
Sbjct: 50 MKSIIPVVMAGIIAIYGLVVAVLIAGSLDAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFA 109
Query: 239 NRICW*CWCSGTAPHPRLFAGLFLFL 316
I GTA PRLF G+ L L
Sbjct: 110 IGIVGDAGVRGTAQQPRLFVGMILIL 135
Score = 35.4 bits (80), Expect = 0.12
Identities = 17/24 (70%), Positives = 17/24 (70%)
Frame = +3
Query: 216 SGLPAGFAIGFVGDAGVRELPHTP 287
SGL AGFAIG VGDAGVR P
Sbjct: 102 SGLAAGFAIGIVGDAGVRGTAQQP 125
>sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolipid subunit (V-ATPase
C-subunit)
Length = 157
Score = 41.2 bits (95), Expect = 0.002
Identities = 34/85 (40%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
Frame = +2
Query: 107 MKSLIPVVMAGIIAIYWYNL------PYENPLR--------HLEAGLRLP-*WIASWFCN 241
MKS+IPVVMAGIIAIY + + P + HL AGL + +A+ F
Sbjct: 53 MKSIIPVVMAGIIAIYGLVVAVLIAGSLDTPTKYSLYKGFIHLGAGLAVGISGLAAGFAI 112
Query: 242 RICW*CWCSGTAPHPRLFAGLFLFL 316
I GTA PRLF G+ L L
Sbjct: 113 GIVGDAGVRGTAQQPRLFVGMILIL 137
Score = 36.2 bits (82), Expect = 0.070
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = +3
Query: 213 LSGLPAGFAIGFVGDAGVRELPHTP 287
+SGL AGFAIG VGDAGVR P
Sbjct: 103 ISGLAAGFAIGIVGDAGVRGTAQQP 127
>sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 39.3 bits (90), Expect = 0.008
Identities = 32/83 (38%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Frame = +2
Query: 107 MKSLIPVVMAGIIAIYWY------------NLPYENPLRHLEAGLRLP-*WIASWFCNRI 247
MKS+IPVVMAGIIAIY ++ L AGL + +A+ F I
Sbjct: 53 MKSIIPVVMAGIIAIYGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGI 112
Query: 248 CW*CWCSGTAPHPRLFAGLFLFL 316
GTA PRLF G+ L L
Sbjct: 113 VGDAGVRGTAQQPRLFVGMILIL 135
Score = 37.0 bits (84), Expect = 0.041
Identities = 18/25 (72%), Positives = 18/25 (72%)
Frame = +3
Query: 213 LSGLPAGFAIGFVGDAGVRELPHTP 287
LSGL AGFAIG VGDAGVR P
Sbjct: 101 LSGLAAGFAIGIVGDAGVRGTAQQP 125
>sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolipid subunit (15 kDa
mediatophore protein)
Length = 154
Score = 38.9 bits (89), Expect = 0.011
Identities = 32/83 (38%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Frame = +2
Query: 107 MKSLIPVVMAGIIAIYWY------------NLPYENPLRHLEAGLRLP-*WIASWFCNRI 247
MKS+IPVVMAGIIAIY ++ L AGL + +A+ F I
Sbjct: 52 MKSIIPVVMAGIIAIYGLVVAVLIANSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGI 111
Query: 248 CW*CWCSGTAPHPRLFAGLFLFL 316
GTA PRLF G+ L L
Sbjct: 112 VGDAGVRGTAQQPRLFVGMILIL 134
Score = 37.0 bits (84), Expect = 0.041
Identities = 18/25 (72%), Positives = 18/25 (72%)
Frame = +3
Query: 213 LSGLPAGFAIGFVGDAGVRELPHTP 287
LSGL AGFAIG VGDAGVR P
Sbjct: 100 LSGLAAGFAIGIVGDAGVRGTAQQP 124
>sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P63082|VATL_MOUSE Vacuolar ATP synthase 16 kDa proteolipid subunit (PL16)
Length = 155
Score = 38.9 bits (89), Expect = 0.011
Identities = 32/83 (38%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Frame = +2
Query: 107 MKSLIPVVMAGIIAIYWY------------NLPYENPLRHLEAGLRLP-*WIASWFCNRI 247
MKS+IPVVMAGIIAIY + L AGL + +A+ F I
Sbjct: 53 MKSIIPVVMAGIIAIYGLVVAVLIANSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGI 112
Query: 248 CW*CWCSGTAPHPRLFAGLFLFL 316
GTA PRLF G+ L L
Sbjct: 113 VGDAGVRGTAQQPRLFVGMILIL 135
Score = 37.0 bits (84), Expect = 0.041
Identities = 18/25 (72%), Positives = 18/25 (72%)
Frame = +3
Query: 213 LSGLPAGFAIGFVGDAGVRELPHTP 287
LSGL AGFAIG VGDAGVR P
Sbjct: 101 LSGLAAGFAIGIVGDAGVRGTAQQP 125
>sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 38.9 bits (89), Expect = 0.011
Identities = 32/83 (38%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Frame = +2
Query: 107 MKSLIPVVMAGIIAIYWY------------NLPYENPLRHLEAGLRLP-*WIASWFCNRI 247
MKS+IPVVMAGIIAIY + L AGL + +A+ F I
Sbjct: 53 MKSIIPVVMAGIIAIYGLVVAVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGI 112
Query: 248 CW*CWCSGTAPHPRLFAGLFLFL 316
GTA PRLF G+ L L
Sbjct: 113 VGDAGVRGTAQQPRLFVGMILIL 135
Score = 37.0 bits (84), Expect = 0.041
Identities = 18/25 (72%), Positives = 18/25 (72%)
Frame = +3
Query: 213 LSGLPAGFAIGFVGDAGVRELPHTP 287
LSGL AGFAIG VGDAGVR P
Sbjct: 101 LSGLAAGFAIGIVGDAGVRGTAQQP 125
>sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 38.9 bits (89), Expect = 0.011
Identities = 32/83 (38%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Frame = +2
Query: 107 MKSLIPVVMAGIIAIYWY------------NLPYENPLRHLEAGLRLP-*WIASWFCNRI 247
MKS+IPVVMAGIIAIY + L AGL + +A+ F I
Sbjct: 53 MKSIIPVVMAGIIAIYGLVVAVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGI 112
Query: 248 CW*CWCSGTAPHPRLFAGLFLFL 316
GTA PRLF G+ L L
Sbjct: 113 VGDAGVRGTAQQPRLFVGMILIL 135
Score = 37.0 bits (84), Expect = 0.041
Identities = 18/25 (72%), Positives = 18/25 (72%)
Frame = +3
Query: 213 LSGLPAGFAIGFVGDAGVRELPHTP 287
LSGL AGFAIG VGDAGVR P
Sbjct: 101 LSGLAAGFAIGIVGDAGVRGTAQQP 125
>sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 159
Score = 37.0 bits (84), Expect = 0.041
Identities = 18/25 (72%), Positives = 18/25 (72%)
Frame = +3
Query: 213 LSGLPAGFAIGFVGDAGVRELPHTP 287
LSGL AGFAIG VGDAGVR P
Sbjct: 102 LSGLAAGFAIGIVGDAGVRGTAQQP 126
Score = 36.2 bits (82), Expect = 0.070
Identities = 33/87 (37%), Positives = 41/87 (47%), Gaps = 17/87 (19%)
Frame = +2
Query: 107 MKSLIPVVMAGIIAIY----------------WYNLPYENPLRHLEAGLRLP-*WIASWF 235
MK +IPVVMAGIIAIY Y L Y+ H+ AGL + +A+ F
Sbjct: 52 MKCIIPVVMAGIIAIYGLVVAVLIAGKLDEAPTYTL-YQG-FVHMGAGLSVGLSGLAAGF 109
Query: 236 CNRICW*CWCSGTAPHPRLFAGLFLFL 316
I GTA PRL+ G+ L L
Sbjct: 110 AIGIVGDAGVRGTAQQPRLYVGMILIL 136
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,826,167
Number of Sequences: 369166
Number of extensions: 1739576
Number of successful extensions: 4465
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4442
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4926080070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)