Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_J09
(905 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8SX83|SPEN_DROME Split ends protein 47 7e-05
sp|Q07050|TOP1_CRIGR DNA topoisomerase I 42 0.002
sp|Q7YR26|TOP1_CERAE DNA topoisomerase I 42 0.002
sp|Q04750|TOP1_MOUSE DNA topoisomerase I 42 0.002
sp|Q9WUL0|TOP1_RAT DNA topoisomerase I 42 0.002
sp|P35662|CYL1_BOVIN Cylicin-1 (Cylicin I) (Multiple-band p... 41 0.004
sp|Q8WXA9|SFR12_HUMAN Splicing factor, arginine/serine-rich... 41 0.004
sp|P49756|RBM25_HUMAN Probable RNA-binding protein 25 (RNA-... 41 0.004
sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 ... 39 0.015
sp|Q5T200|K0853_HUMAN Protein KIAA0853 39 0.015
>sp|Q8SX83|SPEN_DROME Split ends protein
Length = 5560
Score = 47.0 bits (110), Expect = 7e-05
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Frame = +3
Query: 51 EYNKKDYVNDSVKDLRKERENIRDSRDAGKESRAREHREPMKENKDIDRRSKIVSDEKDG 230
E KK+ KDLRK+ E R A +E R +E R+ +E K+ +R K D +
Sbjct: 1924 EKEKKERQEKREKDLRKQVEREEKDRKAQQEEREKEDRKAKEEEKEREREKKAQEDREKK 1983
Query: 231 RQEQRDINKXXXXXXXXXXXXPKYNEREIR----RDPKESDRDLK----RDSKTNEKE 380
+E+R++ + + E+EIR R+ ++ +RD + RD EKE
Sbjct: 1984 EREERELREKEQRDK-------EQKEKEIREKDLREKEQRERDNREKELRDKDLREKE 2034
Score = 41.6 bits (96), Expect = 0.003
Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
Frame = +3
Query: 6 DMHRDLRRKDSYKDREYNKKDYVNDSVKDLRKERENIRDSRDAGKESRAREHREPM-KEN 182
D+ + + R++ + + +++ + K+ KERE + +++ +E + RE RE KE
Sbjct: 1937 DLRKQVEREEKDRKAQQEEREKEDRKAKEEEKEREREKKAQE-DREKKEREERELREKEQ 1995
Query: 183 KDIDRRSKIVSDEKDGRQEQRDINKXXXXXXXXXXXXPKYNEREIRRDPKESDRDLKRDS 362
+D +++ K + ++ +EQR+ + + E+E R +++L R+
Sbjct: 1996 RDKEQKEKEIREKDLREKEQRERDNREKELRDKDLREKEMREKEQR------EKELHREK 2049
Query: 363 KTNEKEH 383
E+EH
Sbjct: 2050 DQREREH 2056
Score = 30.4 bits (67), Expect = 7.1
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = +3
Query: 15 RDLRRKDSYKDREYNKKDYVNDSVKDLRKERENIRDSRDAG----KESRAREHREPMKEN 182
+DLR K+ ++R+ +K+ + KDLR++ ++ R+ K+ R REHRE
Sbjct: 2008 KDLREKEQ-RERDNREKELRD---KDLREKEMREKEQREKELHREKDQREREHRE----- 2058
Query: 183 KDIDRRSKIVSDEKDG 230
K+ RR+ V E G
Sbjct: 2059 KEQSRRAMDVEQEGRG 2074
Score = 30.0 bits (66), Expect = 9.3
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Frame = +3
Query: 84 VKDLRKERENIRDSRDAGKESRAREHREPMKENKDIDRRSKIVSDEKD--GRQEQRDINK 257
++D E ++ D A K R + ++ +E ++ D R ++ +EKD +QE+R+
Sbjct: 1903 IEDDSSEADDTADK--AEKNQRHEKEKKERQEKREKDLRKQVEREEKDRKAQQEERE--- 1957
Query: 258 XXXXXXXXXXXXPKYNEREIRRDPKESDRDLKRDSKTNEKE 380
+R+ + + KE +R+ K +KE
Sbjct: 1958 --------------KEDRKAKEEEKEREREKKAQEDREKKE 1984
>sp|Q07050|TOP1_CRIGR DNA topoisomerase I
Length = 767
Score = 42.4 bits (98), Expect = 0.002
Identities = 22/81 (27%), Positives = 43/81 (53%)
Frame = +3
Query: 3 NDMHRDLRRKDSYKDREYNKKDYVNDSVKDLRKERENIRDSRDAGKESRAREHREPMKEN 182
ND H+ KD +KDRE+ K++ D KD K + + + +D+ K+ + +E + K+
Sbjct: 19 NDSHK---HKDKHKDREHRHKEHKKDKEKDREKSKHSNSEHKDSEKKHKEKE-KTKHKDG 74
Query: 183 KDIDRRSKIVSDEKDGRQEQR 245
+ K +K+ R+E++
Sbjct: 75 SSEKHKDKHKDRDKEKRKEEK 95
>sp|Q7YR26|TOP1_CERAE DNA topoisomerase I
Length = 767
Score = 42.4 bits (98), Expect = 0.002
Identities = 22/81 (27%), Positives = 43/81 (53%)
Frame = +3
Query: 3 NDMHRDLRRKDSYKDREYNKKDYVNDSVKDLRKERENIRDSRDAGKESRAREHREPMKEN 182
ND H+ KD +KDRE+ K++ D KD K + + + +D+ K+ + +E + K+
Sbjct: 19 NDSHK---HKDKHKDREHRHKEHKKDKEKDREKSKHSNSEHKDSEKKHKEKE-KTKHKDG 74
Query: 183 KDIDRRSKIVSDEKDGRQEQR 245
+ K +K+ R+E++
Sbjct: 75 SSEKHKDKHKDRDKEKRKEEK 95
>sp|Q04750|TOP1_MOUSE DNA topoisomerase I
Length = 767
Score = 42.0 bits (97), Expect = 0.002
Identities = 22/81 (27%), Positives = 43/81 (53%)
Frame = +3
Query: 3 NDMHRDLRRKDSYKDREYNKKDYVNDSVKDLRKERENIRDSRDAGKESRAREHREPMKEN 182
ND H+ KD +KDRE+ K++ D KD K + + + +D+ K+ + +E + K+
Sbjct: 19 NDSHK---HKDKHKDREHRHKEHKKDKDKDREKSKHSNSEHKDSEKKHKEKE-KTKHKDG 74
Query: 183 KDIDRRSKIVSDEKDGRQEQR 245
+ K +K+ R+E++
Sbjct: 75 SSEKHKDKHKDRDKERRKEEK 95
>sp|Q9WUL0|TOP1_RAT DNA topoisomerase I
Length = 767
Score = 42.0 bits (97), Expect = 0.002
Identities = 22/81 (27%), Positives = 43/81 (53%)
Frame = +3
Query: 3 NDMHRDLRRKDSYKDREYNKKDYVNDSVKDLRKERENIRDSRDAGKESRAREHREPMKEN 182
ND H+ KD +KDRE+ K++ D KD K + + + +D+ K+ + +E + K+
Sbjct: 19 NDSHK---HKDKHKDREHRHKEHKKDKDKDREKSKHSNSEHKDSEKKHKEKE-KTKHKDG 74
Query: 183 KDIDRRSKIVSDEKDGRQEQR 245
+ K +K+ R+E++
Sbjct: 75 SSDKHKDKHKDRDKEKRKEEK 95
>sp|P35662|CYL1_BOVIN Cylicin-1 (Cylicin I) (Multiple-band polypeptide I)
Length = 667
Score = 41.2 bits (95), Expect = 0.004
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Frame = +3
Query: 30 KDSYKDREYNKKDYVNDS-VKDLRKERENI----RDSRDAGKESRAREHREPMKENKDID 194
KD+ KD + KKD D+ KD +K+ E+ DS+DA K+S+ + ++ K++K D
Sbjct: 367 KDAKKDSKKGKKDSKKDNKKKDAKKDAESTDAESGDSKDAKKDSK-KGKKDSKKDDKKKD 425
Query: 195 RRSKIVS------DEKDGRQEQRDINKXXXXXXXXXXXXPKYNEREIRRDPKESDRDLKR 356
+ S D K+ +++ + K + E D K+S +D K+
Sbjct: 426 AKKDAESTDAESGDSKNAKKDSKKGKKDDKKKDAKKDAVSTDADSESEGDAKKSKKDSKK 485
Query: 357 DSKTNEKE 380
D K +K+
Sbjct: 486 DKKDLKKD 493
Score = 39.7 bits (91), Expect = 0.012
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Frame = +3
Query: 30 KDSYKDREYNKKD-YVNDSVKDLRKERENI----RDSRDAGKESRAREHREPMKENK--- 185
KD+ KD + KKD +D KD +K+ E+ DS++A K+S+ + + K+ K
Sbjct: 404 KDAKKDSKKGKKDSKKDDKKKDAKKDAESTDAESGDSKNAKKDSKKGKKDDKKKDAKKDA 463
Query: 186 -----DIDRRSKIVSDEKDGRQEQRDINKXXXXXXXXXXXXPKYNEREIRRDPKESDRDL 350
D + +KD +++++D+ K + E E + K+ RD
Sbjct: 464 VSTDADSESEGDAKKSKKDSKKDKKDLKK--DDQKKPAMKSKESTETESDWESKKVKRDS 521
Query: 351 KRDSKTNEKE 380
K+D+K K+
Sbjct: 522 KKDTKKTAKK 531
Score = 36.2 bits (82), Expect = 0.13
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Frame = +3
Query: 30 KDSYKDREYNKKDYVNDSVKDLRKERENIRDSRDAG--KESRAREHREPMKENKDIDRRS 203
KD+ KD++ KD + KD DS+DA K+ ++ ++ K++ D S
Sbjct: 304 KDAKKDKKGATKDTKKGAKKDTESTDAESGDSKDAKKGKKESKKDKKKDAKKDAASDAES 363
Query: 204 KIVSD-EKDGRQEQRDINKXXXXXXXXXXXXPKYNEREIRRDPKESDRDLKRDSKTNEKE 380
D +KD ++ ++D K E +D K+ + K+DSK ++K+
Sbjct: 364 GDSKDAKKDSKKGKKDSKKDNKKKDAKKDAESTDAESGDSKDAKKDSKKGKKDSKKDDKK 423
>sp|Q8WXA9|SFR12_HUMAN Splicing factor, arginine/serine-rich 12 (Serine-arginine-rich
splicing regulatory protein 86) (SRrp86) (Splicing
regulatory protein 508) (SRrp508)
Length = 508
Score = 41.2 bits (95), Expect = 0.004
Identities = 28/120 (23%), Positives = 50/120 (41%)
Frame = +3
Query: 24 RRKDSYKDREYNKKDYVNDSVKDLRKERENIRDSRDAGKESRAREHREPMKENKDIDRRS 203
R KD KDRE ++ + KD KE+E +D ++ R++E E K++K
Sbjct: 309 REKDKEKDRERERE---KEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPP 365
Query: 204 KIVSDEKDGRQEQRDINKXXXXXXXXXXXXPKYNEREIRRDPKESDRDLKRDSKTNEKEH 383
+ + + R R+ + K +R+ R P R+ K + E++H
Sbjct: 366 RSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDH 425
Score = 40.4 bits (93), Expect = 0.007
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Frame = +3
Query: 24 RRKDSYKDREYNKKDYVNDSVKDLR---KERENIRDSRDAGKESRAREHREPMKE---NK 185
+R S + R+ + + D KD R KE+E +++ +D KE + RE KE NK
Sbjct: 241 KRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKE-KDREKEREREKEREKEKERGKNK 299
Query: 186 DID--RRSKIVSDEKDGRQEQRDINKXXXXXXXXXXXXPKYNEREIRRDPKESDRDLKRD 359
D D R D++ R+ +R+ K ERE R KE D K+D
Sbjct: 300 DRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRS-KEIDEKRKKD 358
Query: 360 SKT 368
K+
Sbjct: 359 KKS 361
Score = 38.1 bits (87), Expect = 0.034
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Frame = +3
Query: 24 RRKDSYKDREYNKKDYVNDSVKDLRKERENIRDSRDAGKESRAR-EHREPMKENKDIDRR 200
R + KDR +K + S R++ + SRD K++R + + +E +KE DR
Sbjct: 224 RSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEK---DRE 280
Query: 201 SKIVSDEKDGRQEQRDINKXXXXXXXXXXXXPKYNEREIRRDPK-ESDRDLKRDSKTNEK 377
+ +++ ++++R NK K +RE R+ + E DRD K K +K
Sbjct: 281 KEREREKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRD-KEKEKEQDK 339
Query: 378 E 380
E
Sbjct: 340 E 340
Score = 35.8 bits (81), Expect = 0.17
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 627 DKIRVRESDIKKDIGREMRESENKRREMNKDRKESKAVDKEFQKD 761
+K RV+E D +K+ RE + K R NKDR + + D+E K+
Sbjct: 270 EKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKE 314
Score = 34.7 bits (78), Expect = 0.38
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = +3
Query: 627 DKIRVRESDIKKDIGREMRESENKRREMNKDRKESKAVDKEFQKDTR 767
D+ R RE + +KD +E + ++K +E KDR SK +D++ +KD +
Sbjct: 316 DREREREKEHEKDRDKEKEKEQDKEKEREKDR--SKEIDEKRKKDKK 360
Score = 32.0 bits (71), Expect = 2.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 627 DKIRVRESDIKKDIGREMRESENKRREMNKDRKESKAVDKEFQKD 761
D+ + RE D +KD ++ K E ++D+++ K DKE +++
Sbjct: 300 DRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKERE 344
>sp|P49756|RBM25_HUMAN Probable RNA-binding protein 25 (RNA-binding motif protein 25)
(RNA-binding region containing protein 7) (Protein S164)
Length = 784
Score = 41.2 bits (95), Expect = 0.004
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 10/135 (7%)
Frame = +3
Query: 6 DMHRDLRRKDSYKDREYNKKDYVNDSVKDLRKERENIRD-----SRDAGKESRAREHREP 170
+ R R ++ ++RE +++ + ++ KE+E R+ RD KE R R+
Sbjct: 247 EKERRERERERERERERREREREREREREREKEKERERERERDRDRDRTKE-RDRDRDRE 305
Query: 171 MKENKDIDRRSKIVSDEKDGRQEQRDINKXXXXXXXXXXXXPKYNEREIRRD-----PKE 335
++D +R S D R++ RD + + ERE R+ +E
Sbjct: 306 RDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERERERERERERERE 365
Query: 336 SDRDLKRDSKTNEKE 380
++D KRD + +E++
Sbjct: 366 REKDKKRDREEDEED 380
Score = 35.4 bits (80), Expect = 0.22
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Frame = +3
Query: 30 KDSYK--DREYNKKDYVNDSVKDLRKERENIRDSRDAGKESRAREHREPMKENKDIDRRS 203
+D++K + E KK+ ++ R+ERE R+ R+ + R RE + K+ +R
Sbjct: 226 RDTHKKLEEEKGKKEKERQEIEKERRERERERE-RERERREREREREREREREKEKERER 284
Query: 204 KIVSDEKDGRQEQRDINKXXXXXXXXXXXXPKYNEREIRRDPKESDRDLKRDSKTNEK 377
+ D R ++RD ++ ER+ RD + S K S++ EK
Sbjct: 285 ERERDRDRDRTKERDRDRD--------------RERDRDRDRERSSDRNKDRSRSREK 328
Score = 34.7 bits (78), Expect = 0.38
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 1/121 (0%)
Frame = +3
Query: 6 DMHRDLRRK-DSYKDREYNKKDYVNDSVKDLRKERENIRDSRDAGKESRAREHREPMKEN 182
D RD R D KDR ++ D ++ +ERE R+ + R RE +
Sbjct: 307 DRDRDRERSSDRNKDRS-RSREKSRDRERERERERERERERERERERERERERERERERE 365
Query: 183 KDIDRRSKIVSDEKDGRQEQRDINKXXXXXXXXXXXXPKYNEREIRRDPKESDRDLKRDS 362
++ D++ DE+D + ++ K + RE R+ +E +++ +R+
Sbjct: 366 REKDKKRDREEDEEDAYERRKLERKLREKEAAYQERLKNWEIRE-RKKTREYEKEAEREE 424
Query: 363 K 365
+
Sbjct: 425 E 425
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
(snRNP70) (U1-70K)
Length = 427
Score = 39.3 bits (90), Expect = 0.015
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 12/135 (8%)
Frame = +3
Query: 15 RDLRRKDSY-KDREYNKKDYVNDSVKDLRKEREN---IRDSRDAGKESRAREHREPMKEN 182
RD R+D + +DR+ +D DS +D + R+ R RD G++ +R+H
Sbjct: 291 RDRpreDKHHRDRDQGGRDRDRDSRRDRDRTRDRGDRDRRDRDRGRDRTSRDHDRDRSRK 350
Query: 183 KDIDRRSKIVSDEKDGRQEQRDI------NKXXXXXXXXXXXXPKYNER--EIRRDPKES 338
K+ D E GR +RD + +Y+ R ++ D
Sbjct: 351 KERDYEGGEYEHEGGGRSRERDAEYRGEPEETRGYYEDDQGDTDRYSHRYDKMEEDDFRY 410
Query: 339 DRDLKRDSKTNEKEH 383
+R+ KR ++ +E+
Sbjct: 411 EREYKRSKRSESREY 425
>sp|Q5T200|K0853_HUMAN Protein KIAA0853
Length = 1668
Score = 39.3 bits (90), Expect = 0.015
Identities = 32/126 (25%), Positives = 62/126 (49%)
Frame = +3
Query: 3 NDMHRDLRRKDSYKDREYNKKDYVNDSVKDLRKERENIRDSRDAGKESRAREHREPMKEN 182
+++ RD RR++ DR +++D + ++ +ERE R+ + R RE RE +E
Sbjct: 652 DELERDERREERRVDRVDDRRD---ERARERDRERERDRERERERERERDRE-REKEREL 707
Query: 183 KDIDRRSKIVSDEKDGRQEQRDINKXXXXXXXXXXXXPKYNEREIRRDPKESDRDLKRDS 362
+ R + EK+ R +RD ++ + ERE R+ +E +R+ +R+
Sbjct: 708 ERERAREREREREKE-RDRERDRDRDHDRERERERERDREKEREREREERERERERERE- 765
Query: 363 KTNEKE 380
+ E+E
Sbjct: 766 RERERE 771
Score = 36.2 bits (82), Expect = 0.13
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 16/94 (17%)
Frame = +3
Query: 24 RRKDSYKDREYNK-----KDYVND----------SVKDLRKERENIRDSRDAGKESRARE 158
R KDS ++REY + +D+ +D +D R RE +RDSRD R+
Sbjct: 426 REKDSREEREYEQDQSSSRDHRDDREPRDGRDRRDARDTRDRRE-LRDSRDMRDSREMRD 484
Query: 159 HREPMKENKDIDRRSKIVSDEKDGR-QEQRDINK 257
+ KE++D R S+ D D R +E RD ++
Sbjct: 485 YSRDTKESRD-PRDSRSTRDAHDYRDREGRDTHR 517
Score = 36.2 bits (82), Expect = 0.13
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Frame = +3
Query: 15 RDLRRKDSYKDREYNKKDYVNDSVKDLRKERENIRDSRDAGKESRAREH-------REPM 173
RD R +D + ++ +D R+E + D D ++ RARE RE
Sbjct: 632 RDNRERDQRPSSPIRHQGRNDELERDERREERRV-DRVDDRRDERARERDRERERDRERE 690
Query: 174 KE---NKDIDRRSKIVSDEKDGRQEQRDINKXXXXXXXXXXXXPKYNEREIRRDPKESDR 344
+E +D +R + + + R+ +R+ K + ERE RD +E +R
Sbjct: 691 RERERERDREREKERELERERAREREREREKERDRERDRDRDHDRERERERERD-REKER 749
Query: 345 DLKRDSKTNEKE 380
+ +R+ + E+E
Sbjct: 750 EREREERERERE 761
Score = 36.2 bits (82), Expect = 0.13
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Frame = +3
Query: 24 RRKDSYKDREYNKKDYVNDSVKDLRKERENIRDSRDAGKESRAREHREPMKENKDIDRRS 203
R ++ +DRE K+ + ++ +ERE R+ + R R+H + ++ DR
Sbjct: 691 RERERERDREREKE---RELERERAREREREREKERDRERDRDRDHDRERERERERDREK 747
Query: 204 KIVSD-EKDGRQEQRDINKXXXXXXXXXXXXPKYNEREIRRDPKESDRDLKRDSKTNEKE 380
+ + E+ R+ +R+ + + ERE +RD D+D RD + ++E
Sbjct: 748 EREREREERERERERERERERERERERERARERDKERERQRD--WEDKDKGRDDRREKRE 805
Score = 34.7 bits (78), Expect = 0.38
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Frame = +3
Query: 3 NDMHRDLRRKDSYKDR----EYNKKDYVNDSVKDLRKERENIRDSRDAGKE-SRAREHR- 164
++ H + SY +R E + +D DS + R + RD+R+ + S H+
Sbjct: 590 SNYHDSWETRSSYPERDRYPERDNRDQARDSSFERRHGERDRRDNRERDQRPSSPIRHQG 649
Query: 165 ---EPMKENKDIDRRSKIVSDEKDGRQEQRDINKXXXXXXXXXXXXPKYNEREIRRD-PK 332
E ++ + +RR V D +D R +RD + + ERE RD +
Sbjct: 650 RNDELERDERREERRVDRVDDRRDERARERDRER--------ERDRERERERERERDRER 701
Query: 333 ESDRDLKRDSKTNEKE 380
E +R+L+R+ + E+E
Sbjct: 702 EKERELERE-RARERE 716
Score = 34.7 bits (78), Expect = 0.38
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 9/127 (7%)
Frame = +3
Query: 24 RRKDSYKDREYNKKDYVNDSVKDLRKERENIRDSRDAGKESRAREHREPMKENKDIDRRS 203
R +D K+RE +++ + ++ +ERE R+ RARE + + +D + +
Sbjct: 741 RERDREKEREREREERERERERERERERERERE------RERARERDKERERQRDWEDKD 794
Query: 204 KIVSDEKDGRQEQR---------DINKXXXXXXXXXXXXPKYNEREIRRDPKESDRDLKR 356
K D ++ R+E R D K P+ + + R +SD
Sbjct: 795 KGRDDRREKREEIREDRNPRDGHDERKSKKRYRNEGSPSPRQSPKRRREHSPDSDAYNSG 854
Query: 357 DSKTNEK 377
D K NEK
Sbjct: 855 DDK-NEK 860
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,728,923
Number of Sequences: 369166
Number of extensions: 824649
Number of successful extensions: 4523
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4384
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)