Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_J02
(257 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 93 2e-19
sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1) >gi|... 92 3e-19
sp|O48649|ARF1_SALBA ADP-ribosylation factor 1 92 4e-19
sp|P36397|ARF1_ARATH ADP-ribosylation factor 1 92 4e-19
sp|P51823|ARF_ORYSA ADP-ribosylation factor 92 4e-19
sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regener... 92 5e-19
sp|P84082|ARF2_RAT ADP-ribosylation factor 2 >gi|51316991|s... 92 5e-19
sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1 >gi|51316981... 92 5e-19
sp|P51643|ARF1_XENLA ADP-ribosylation factor 1 92 5e-19
sp|Q9SRC3|ARF2_ARATH ADP-ribosylation factor 1-like 91 6e-19
>sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1
Length = 181
Score = 92.8 bits (229), Expect = 2e-19
Identities = 43/55 (78%), Positives = 46/55 (83%)
Frame = +3
Query: 3 NKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 167
NKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN L K
Sbjct: 126 NKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180
>sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1)
sp|P61209|ARF1_DROME ADP-ribosylation factor 1
Length = 182
Score = 92.4 bits (228), Expect = 3e-19
Identities = 42/52 (80%), Positives = 46/52 (88%)
Frame = +3
Query: 3 NKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNEL 158
NKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN+L
Sbjct: 126 NKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQL 177
>sp|O48649|ARF1_SALBA ADP-ribosylation factor 1
Length = 181
Score = 92.0 bits (227), Expect = 4e-19
Identities = 42/55 (76%), Positives = 46/55 (83%)
Frame = +3
Query: 3 NKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 167
NKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN + K
Sbjct: 126 NKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSK 180
>sp|P36397|ARF1_ARATH ADP-ribosylation factor 1
Length = 181
Score = 92.0 bits (227), Expect = 4e-19
Identities = 42/55 (76%), Positives = 46/55 (83%)
Frame = +3
Query: 3 NKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 167
NKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN + K
Sbjct: 126 NKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
>sp|P51823|ARF_ORYSA ADP-ribosylation factor
Length = 181
Score = 92.0 bits (227), Expect = 4e-19
Identities = 42/55 (76%), Positives = 46/55 (83%)
Frame = +3
Query: 3 NKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 167
NKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN + K
Sbjct: 126 NKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
>sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regeneration-related protein
LRRG202)
sp|P61205|ARF3_MOUSE ADP-ribosylation factor 3
sp|P61207|ARF3_FUGRU ADP-ribosylation factor 3
sp|Q5R5P7|ARF3_PONPY ADP-ribosylation factor 3
sp|P61204|ARF3_HUMAN ADP-ribosylation factor 3
Length = 181
Score = 91.7 bits (226), Expect = 5e-19
Identities = 42/55 (76%), Positives = 47/55 (85%)
Frame = +3
Query: 3 NKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 167
NKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWL+N+L K
Sbjct: 126 NKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>sp|P84082|ARF2_RAT ADP-ribosylation factor 2
sp|Q8BSL7|ARF2_MOUSE ADP-ribosylation factor 2
sp|P84081|ARF2_BOVIN ADP-ribosylation factor 2
Length = 181
Score = 91.7 bits (226), Expect = 5e-19
Identities = 42/52 (80%), Positives = 46/52 (88%)
Frame = +3
Query: 3 NKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNEL 158
NKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN+L
Sbjct: 126 NKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQL 177
>sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1
sp|P84079|ARF1_RAT ADP-ribosylation factor 1
sp|P84078|ARF1_MOUSE ADP-ribosylation factor 1
sp|P84077|ARF1_HUMAN ADP-ribosylation factor 1
sp|P84080|ARF1_BOVIN ADP-ribosylation factor 1
Length = 181
Score = 91.7 bits (226), Expect = 5e-19
Identities = 42/52 (80%), Positives = 46/52 (88%)
Frame = +3
Query: 3 NKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNEL 158
NKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN+L
Sbjct: 126 NKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 177
>sp|P51643|ARF1_XENLA ADP-ribosylation factor 1
Length = 181
Score = 91.7 bits (226), Expect = 5e-19
Identities = 42/52 (80%), Positives = 46/52 (88%)
Frame = +3
Query: 3 NKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNEL 158
NKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN+L
Sbjct: 126 NKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 177
>sp|Q9SRC3|ARF2_ARATH ADP-ribosylation factor 1-like
Length = 181
Score = 91.3 bits (225), Expect = 6e-19
Identities = 42/55 (76%), Positives = 46/55 (83%)
Frame = +3
Query: 3 NKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 167
NKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN + K
Sbjct: 126 NKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,221,086
Number of Sequences: 369166
Number of extensions: 529720
Number of successful extensions: 1341
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)