Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_I19
(754 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9W6I0|BZFB_XENLA Basic FGF-repressed Zic-binding protei... 96 1e-19
sp|Q9CWU6|BZFB_MOUSE Basic FGF-repressed Zic-binding protei... 96 1e-19
sp|Q9NVA1|BZFB_HUMAN Basic FGF-repressed Zic-binding protei... 94 5e-19
sp|P21560|CBP3_YEAST Protein CBP3, mitochondrial precursor 65 1e-10
sp|Q9USK6|CBP3_SCHPO CBP3-like protein 62 2e-09
sp|Q7VQW8|HIS7_BLOFL Histidine biosynthesis bifunctional pr... 31 3.1
sp|O32101|YUEB_BACSU Bacteriophage SPP1 adsorption protein ... 31 4.1
sp|Q91829|RAG1_XENLA V(D)J recombination-activating protein... 30 5.3
sp|Q25417|ALDH2_LEITA Aldehyde dehydrogenase, mitochondrial... 30 9.1
>sp|Q9W6I0|BZFB_XENLA Basic FGF-repressed Zic-binding protein homolog (Zic3-binding
protein)
Length = 200
Score = 95.9 bits (237), Expect = 1e-19
Identities = 54/182 (29%), Positives = 97/182 (53%), Gaps = 6/182 (3%)
Frame = +1
Query: 127 LRYSERNIEITGCKLYAVAAEYPDINSFIEYFNLPDTFQTWFNMMCIHTWLLALRLEHEG 306
L+Y++ I+I ++Y E D + F E +LPDT +WF + +H W+ +R++ EG
Sbjct: 7 LKYNKWKIKIAALRMYTCCVERIDYDEFFEKCSLPDTLNSWFLVTQLHVWMCLVRMKQEG 66
Query: 307 VEGRIGKSKMMNIAYQDIEKRAKKMG------GKVSKKMIKFFYGEMIYLMASFDEALLR 468
G+ +++ ++D+E+R K MG + M + FY + +DE ++
Sbjct: 67 RAGKYMCRYIVHSMWEDVEQRGKVMGIDSVTLKNSMRSMTEIFYAAIF----GYDEGII- 121
Query: 469 QSDYLLADTLWCNVMNQFYPPADNDLERLEKMIAYIWKQIPHLNSLSSERFLSTGEVPFL 648
D +LA LW N++N+ +D +LE ++ Y+ KQ+ L++L E L TGEV +
Sbjct: 122 SDDRILAAALWRNLLNK----QCDDPRKLELLVEYVRKQVQFLDTLDGEDLLLTGEVVWR 177
Query: 649 PI 654
P+
Sbjct: 178 PL 179
>sp|Q9CWU6|BZFB_MOUSE Basic FGF-repressed Zic-binding protein (mbFZb)
Length = 295
Score = 95.5 bits (236), Expect = 1e-19
Identities = 53/178 (29%), Positives = 92/178 (51%), Gaps = 2/178 (1%)
Frame = +1
Query: 127 LRYSERNIEITGCKLYAVAAEYPDINSFIEYFNLPDTFQTWFNMMCIHTWLLALRLEHEG 306
L+YS+ I+I ++Y E D F +PDTF +WF + +H W+ +R++ EG
Sbjct: 102 LKYSKWKIKIAALRMYTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEG 161
Query: 307 VEGRIGKSKMMNIAYQDIEKRAKKMG--GKVSKKMIKFFYGEMIYLMASFDEALLRQSDY 480
G+ +++ ++D+E+R + MG + KK + + +DE +L D+
Sbjct: 162 RTGKYMCRIIVHFMWEDVEQRGRVMGVNSYILKKNMALMTNNFYAAILGYDEGIL-SDDH 220
Query: 481 LLADTLWCNVMNQFYPPADNDLERLEKMIAYIWKQIPHLNSLSSERFLSTGEVPFLPI 654
LA LW NQ D +LE ++ Y+ KQ+ +L+S++ E L TGEV + P+
Sbjct: 221 GLAAALWRTFFNQ----KCEDPRQLELLVEYVRKQMQYLDSMNGEDLLLTGEVRWRPL 274
>sp|Q9NVA1|BZFB_HUMAN Basic FGF-repressed Zic-binding protein (bFZb)
Length = 299
Score = 93.6 bits (231), Expect = 5e-19
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Frame = +1
Query: 127 LRYSERNIEITGCKLYAVAAEYPDINSFIEYFNLPDTFQTWFNMMCIHTWLLALRLEHEG 306
L+YS+ I+I ++Y E D F +PDTF +WF + +H W+ +R++ EG
Sbjct: 106 LKYSKWKIKIAALRMYTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEG 165
Query: 307 VEGRIGKSKMMNIAYQDIEKRAKKMGGK--VSKKMIKFFYGEMIYLMASFDEALLRQSDY 480
G+ +++ ++D+++R + MG + KK + + +DE +L D+
Sbjct: 166 RSGKYMCRIIVHFMWEDVQQRGRVMGVNPYILKKNMILMTNHFYAAILGYDEGIL-SDDH 224
Query: 481 LLADTLWCNVMNQFYPPADNDLERLEKMIAYIWKQIPHLNSLSSERFLSTGEVPFLPI 654
LA LW F+ D LE ++ Y+ KQI +L+S++ E L TGEV + P+
Sbjct: 225 GLAAALW----RTFFNRKCEDPRHLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPL 278
>sp|P21560|CBP3_YEAST Protein CBP3, mitochondrial precursor
Length = 335
Score = 65.5 bits (158), Expect = 1e-10
Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 5/153 (3%)
Frame = +1
Query: 208 FIEYFNLPDTFQTWFNMMCIHTWLLALRLEHEGVE-GRIGKSKMMNIAYQDIEKR----A 372
F E LP TF WF + +H W+L +R+ + GR + K+++ + DIE R
Sbjct: 143 FYEDLKLPRTFSQWFQITVLHEWILFVRMRAMPFKYGRNYQQKLVDRTFSDIELRLFEEM 202
Query: 373 KKMGGKVSKKMIKFFYGEMIYLMASFDEALLRQSDYLLADTLWCNVMNQFYPPADNDLER 552
K G+++ + +K F ++ + ++DE D LA +W N+ F + D+
Sbjct: 203 KVNSGRIADQYLKDFNTQLRGAIFAYDEG-FATDDGTLATAVWRNL---FGGRKNIDMVH 258
Query: 553 LEKMIAYIWKQIPHLNSLSSERFLSTGEVPFLP 651
LE ++ YI+ Q+ L+ LS F +TG+ F+P
Sbjct: 259 LESVVRYIYSQLYVLSRLSDREF-ATGKFKFVP 290
>sp|Q9USK6|CBP3_SCHPO CBP3-like protein
Length = 283
Score = 61.6 bits (148), Expect = 2e-09
Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 5/219 (2%)
Frame = +1
Query: 10 KISKYERVFISSVKNIHFQLHKGPLSYSERWQLITGSLRLRYSERNIEITGCKLYAVAAE 189
KIS + +IS +N++++ TG+ R Y E + T K A E
Sbjct: 79 KISLIYQKYISPKQNLYYEA--------------TGTARYMYFEAARQATPEKNSLGAFE 124
Query: 190 YPDINSFIEYFNLPDTFQTWFNMMCIHTWLLALRLEHEGVEGRIGKSKMMNIA-YQDIEK 366
+ + + +P TFQ+WF + +H W+L R+ ++ S+ + ++D+E
Sbjct: 125 F-----WYQKCEIPMTFQSWFQITQLHLWILHTRIRGLPKNEKVAFSQALTTRFFEDMEL 179
Query: 367 RAKK----MGGKVSKKMIKFFYGEMIYLMASFDEALLRQSDYLLADTLWCNVMNQFYPPA 534
R K ++S +K + + + +D+ +L SD +LA ++W N+ F
Sbjct: 180 RIHKDYRINSNRISGMYLKDLFQQQTGAIFGYDQGML-GSDAVLATSVWRNL---FVGRP 235
Query: 535 DNDLERLEKMIAYIWKQIPHLNSLSSERFLSTGEVPFLP 651
D DL LE ++ +I + L+ LS++ F++ V F+P
Sbjct: 236 DVDLVILETIVKFIRLNVYRLSCLSTDDFINGKGVHFVP 274
>sp|Q7VQW8|HIS7_BLOFL Histidine biosynthesis bifunctional protein hisB [Includes:
Histidinol-phosphatase ; Imidazoleglycerol-phosphate
dehydratase (IGPD)]
Length = 357
Score = 31.2 bits (69), Expect = 3.1
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Frame = -2
Query: 498 ERVGQQIVGLSQKRFVETR-----HQIDHFSIEKFDHFLRNFATHLFCPL-LDILVSNIH 337
E + Q I+ LS + + + + +I +FS +HF R+ ++ + C L L ++ +N H
Sbjct: 265 ESIAQCILDLSGRTYFDYQAEYSLQKIGNFSTHMIEHFFRSLSSKMHCTLHLKVIGNNDH 324
Query: 336 H 334
H
Sbjct: 325 H 325
>sp|O32101|YUEB_BACSU Bacteriophage SPP1 adsorption protein yueB (Bacteriophage SPP1
receptor protein yueB)
Length = 1076
Score = 30.8 bits (68), Expect = 4.1
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +1
Query: 352 QDIEKRAKKMGGKVSKKMIKFFYGEMIYLMASFDEALLRQSDYLLADTLWCNVMNQFYPP 531
+++E K M K+S F ++ + FD+ + ++S++ NVM FY P
Sbjct: 147 RELEDAQKTMNKKMSALYWNFVSQKVDNIRGEFDKIVNKESEFQ-------NVMYNFYKP 199
Query: 532 ADNDL 546
+ NDL
Sbjct: 200 SSNDL 204
>sp|Q91829|RAG1_XENLA V(D)J recombination-activating protein 1 (RAG-1)
Length = 1045
Score = 30.4 bits (67), Expect = 5.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 513 HHVAPERVGQQIVGLSQKRFVETRHQID--HFSIEKFDHFLRNF 388
HH +P+ + ++ G+S K F+ET ID H I F R F
Sbjct: 771 HHESPDELRDRVKGVSAKPFIETLPSIDALHCDIGNAAEFYRIF 814
>sp|Q25417|ALDH2_LEITA Aldehyde dehydrogenase, mitochondrial precursor (ALDH class 2)
(P51)
Length = 498
Score = 29.6 bits (65), Expect = 9.1
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 349 YQDIEKRAKKMGGKVSKKMIKFFYGEMIYLMASFDEALLRQSDYLLADTLWCNVMNQFYP 528
Y+D+++ K+ + YG + + LR S YL A T+W N N F P
Sbjct: 407 YKDMDEVVKRANDSI--------YGLAAGICTRSMDTALRYSTYLNAGTVWVNTWNNFCP 458
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,681,775
Number of Sequences: 369166
Number of extensions: 1567214
Number of successful extensions: 4329
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4327
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)