Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_I17
(416 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24788|CD2L1_MOUSE PITSLRE serine/threonine-protein kina... 32 0.68
sp|Q9UQ88|CD2L2_HUMAN PITSLRE serine/threonine-protein kina... 30 2.0
sp|P21127|CD2L1_HUMAN PITSLRE serine/threonine-protein kina... 29 3.4
>sp|P24788|CD2L1_MOUSE PITSLRE serine/threonine-protein kinase CDC2L1
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 1)
Length = 784
Score = 31.6 bits (70), Expect = 0.68
Identities = 20/78 (25%), Positives = 35/78 (44%)
Frame = +3
Query: 15 KKQRLSDLNDIKDSEEKAQNGDDAEEDQXXXXXXXXXXXXXXXXXXXSEKGTEEHVKEKD 194
++ LSDL DI DSE K + + + + SE+ EE +E++
Sbjct: 259 ERDLLSDLQDISDSERKTSSAESSSAES----------------GSGSEEEEEEEEEEEE 302
Query: 195 CNGSSAKVTENGDSAENE 248
GS+++ +E + E E
Sbjct: 303 EEGSTSEESEEEEEEEEE 320
>sp|Q9UQ88|CD2L2_HUMAN PITSLRE serine/threonine-protein kinase CDC2L2
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 2)
(CDK11)
Length = 780
Score = 30.0 bits (66), Expect = 2.0
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Frame = +3
Query: 15 KKQRLSDLNDIKDSEEK--------AQNGDDAEEDQXXXXXXXXXXXXXXXXXXXSEKGT 170
++ LSDL DI DSE K A++G +EE++ SE+
Sbjct: 260 ERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEE-------EEEEEEEEEGSTSEESE 312
Query: 171 EEHVKEKDCNGSSAKVTENGDSAENEVNA*CHIECQLSVQLNDRDVKHLVFVISS 335
EE +E++ GS+++ E + + EV+ E ++S + HL+ V S
Sbjct: 313 EEEEEEEEETGSNSE--EASEQSAEEVS-----EEEMSEDEERENENHLLVVPES 360
>sp|P21127|CD2L1_HUMAN PITSLRE serine/threonine-protein kinase CDC2L1
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 1)
(CLK-1) (CDK11) (p58 CLK-1)
Length = 795
Score = 29.3 bits (64), Expect = 3.4
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Frame = +3
Query: 15 KKQRLSDLNDIKDSEEK--------AQNGDDAEEDQXXXXXXXXXXXXXXXXXXXSEKGT 170
++ LSDL DI DSE K A++G +EE++ SE+
Sbjct: 272 ERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEE----EEEEEEEEEGSTSEESEEEE 327
Query: 171 EEHVKEKDCNGSSAKVTENGDSAENEVNA*CHIECQLSVQLNDRDVKHLVFVISS 335
EE +E++ GS+++ E + + EV+ E ++S + HL+ V S
Sbjct: 328 EEEEEEEEETGSNSE--EASEQSAEEVS-----EEEMSEDEERENENHLLVVPES 375
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,723,945
Number of Sequences: 369166
Number of extensions: 450423
Number of successful extensions: 1220
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)