Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_I11
(873 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P17110|CH36_CERCA Chorion protein S36 34 0.61
sp|P35680|HNF1B_HUMAN Hepatocyte nuclear factor 1-beta (HNF... 31 3.9
sp|Q01056|TEGU_SHV21 Probable large tegument protein 31 5.1
sp|P50575|DLX5_RAT Homeobox protein DLX-5 (DLX-3) (RDLX) 30 6.7
sp|P70396|DLX5_MOUSE Homeobox protein DLX-5 30 6.7
sp|P56178|DLX5_HUMAN Homeobox protein DLX-5 30 6.7
sp|Q06096|COG4_YEAST Conserved oligomeric Golgi complex com... 30 6.7
sp|Q09838|PRZ1_SCHPO Transcriptional regulator prz1 (Pbp1-r... 30 8.8
sp|Q24648|ZEN_DROSU Zerknuellt protein 30 8.8
sp|Q80UG8|TTLL4_MOUSE Tubulin tyrosine ligase-like protein 4 30 8.8
>sp|P17110|CH36_CERCA Chorion protein S36
Length = 320
Score = 33.9 bits (76), Expect = 0.61
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Frame = +1
Query: 286 QAPANSGLYYAATTEPLNPAGA-SFSQLMYPHHQYANRPPRSIIPAANIKSQPSSVLDQA 462
QAP+ G Y+A PA A S+S + A P S PAA+ + PS+ D A
Sbjct: 232 QAPSYGGSSYSAPAASYEPAPAPSYSAAPAQSYNAAPAPSYSAAPAASYGAAPSASYDAA 291
Query: 463 AAVINGQ-----SPSSISTNHSVVNGNG 531
A G SP S S+ S +G
Sbjct: 292 PAASYGAESSYGSPQSSSSYGSAPPASG 319
>sp|P35680|HNF1B_HUMAN Hepatocyte nuclear factor 1-beta (HNF-1beta) (HNF-1B) (Variant
hepatic nuclear factor 1) (VHNF1) (Homeoprotein LFB3)
(Transcription factor 2) (TCF-2)
Length = 557
Score = 31.2 bits (69), Expect = 3.9
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Frame = +1
Query: 310 YYAATTEPLNPAGASFSQLMYPHHQYANRPP-------------RSIIPAANIKSQPSSV 450
Y + T LNP + S PHHQ ++ PP I ++ I +S
Sbjct: 318 YSSNQTHSLNPLLSHGS----PHHQPSSSPPNKLSGVRYSQQGNNEITSSSTISHHGNSA 373
Query: 451 LDQAAAVINGQSPSSISTNHSVVNGNGNLDS 543
+ + +V+ SP+S+ H++++ +G + S
Sbjct: 374 MVTSQSVLQQVSPASLDPGHNLLSPDGKMIS 404
>sp|Q01056|TEGU_SHV21 Probable large tegument protein
Length = 2469
Score = 30.8 bits (68), Expect = 5.1
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Frame = +1
Query: 286 QAPANSGLYYAATTEPLNPAGASFSQLMYPHHQYANRPPRSIIPAANIKSQPSSVLDQAA 465
+ P+N L+YA TEP N S ++P H I+P Q S
Sbjct: 2052 EMPSNIELHYAKVTEPFNKTVLSTMFNVFPTH---------ILPTQEEHDQSISSKSPTF 2102
Query: 466 AVINGQSPSSISTNH-SVVNGNGNLDSHQTNKM*SEDIDDE 585
+ + + +S+ NH + +N N HQ + + + D+
Sbjct: 2103 KIEHDYNTNSVYNNHINNINLTNNSTYHQYKDVLPQPLADK 2143
>sp|P50575|DLX5_RAT Homeobox protein DLX-5 (DLX-3) (RDLX)
Length = 289
Score = 30.4 bits (67), Expect = 6.7
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +1
Query: 340 PAGASFSQLMYPHHQYANRPPRSIIPAANIKSQPSSVLDQAAAVINGQSPSSISTNHSVV 519
P G+S S HH +A+ P + PA++ +S AA+ IN P S H +
Sbjct: 226 PQGSSRS---LSHHPHAHPPTSNQSPASSYLENSASWYPSAASSINSHLPPPGSLQHPLA 282
Query: 520 NGNGNL 537
+G L
Sbjct: 283 LASGTL 288
>sp|P70396|DLX5_MOUSE Homeobox protein DLX-5
Length = 289
Score = 30.4 bits (67), Expect = 6.7
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +1
Query: 340 PAGASFSQLMYPHHQYANRPPRSIIPAANIKSQPSSVLDQAAAVINGQSPSSISTNHSVV 519
P G+S S HH +A+ P + PA++ +S AA+ IN P S H +
Sbjct: 226 PQGSSRS---LSHHPHAHPPTSNQSPASSYLENSASWYPSAASSINSHLPPPGSLQHPLA 282
Query: 520 NGNGNL 537
+G L
Sbjct: 283 LASGTL 288
>sp|P56178|DLX5_HUMAN Homeobox protein DLX-5
Length = 289
Score = 30.4 bits (67), Expect = 6.7
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +1
Query: 340 PAGASFSQLMYPHHQYANRPPRSIIPAANIKSQPSSVLDQAAAVINGQSPSSISTNHSVV 519
P G+S S HH +A+ P + PA++ +S AA+ IN P S H +
Sbjct: 226 PQGSSRS---LSHHPHAHPPTSNQSPASSYLENSASWYTSAASSINSHLPPPGSLQHPLA 282
Query: 520 NGNGNL 537
+G L
Sbjct: 283 LASGTL 288
>sp|Q06096|COG4_YEAST Conserved oligomeric Golgi complex component 4 (Complexed with DOR1
protein 1) (SEC38 protein)
Length = 861
Score = 30.4 bits (67), Expect = 6.7
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = -3
Query: 697 TVEEII*QLSFNL--ILKLARSHSIFVFNLCLGNYYSQNTRHRYLQIT 560
T+E+ I L FN + KL R S+F+ N+C NY N R ++L++T
Sbjct: 768 TLEQRIWTLEFNELGVTKLDRELSLFIGNMCGLNY---NLREKFLKLT 812
>sp|Q09838|PRZ1_SCHPO Transcriptional regulator prz1 (Pbp1-responsive zinc finger protein
1)
Length = 681
Score = 30.0 bits (66), Expect = 8.8
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Frame = +1
Query: 328 EPLNPAGASFSQLMYPHHQYANRPPRSIIPAANIKSQP--------------SSVLDQAA 465
+P++P S S L Y + ++ P +++P++ KSQ S Q+A
Sbjct: 387 DPISPTALSNSVLNYDSNNFSGTPQINVVPSSPSKSQSGPSLPANPLLQTDISITYSQSA 446
Query: 466 AVINGQSPSSISTNHSVVNGN 528
+ ++GQ P+ ++ + N N
Sbjct: 447 SPVSGQ-PAMNENSYDLQNAN 466
>sp|Q24648|ZEN_DROSU Zerknuellt protein
Length = 373
Score = 30.0 bits (66), Expect = 8.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 298 NSGLYYAATTEPLNPAGASFSQLMYPHHQYANRPPRSI 411
+S ++Y P P +S L+Y HH AN P S+
Sbjct: 2 SSVMHYYPVHHPTAPPVVKYSDLLYGHHHSANLQPTSL 39
>sp|Q80UG8|TTLL4_MOUSE Tubulin tyrosine ligase-like protein 4
Length = 934
Score = 30.0 bits (66), Expect = 8.8
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +1
Query: 397 PPRSIIP--AANIKSQPSSV-LDQAAAVINGQSPSSISTNHSVVNGNGNLDSHQTNKM*S 567
PP S+ P A + ++ SSV LDQ G+ P +S G G+ Q N++
Sbjct: 190 PPSSLQPLGVAEVATRLSSVHLDQP-----GKEPEEAKDLNSCTKGGGSATDLQPNQVEP 244
Query: 568 EDIDDECFD 594
ED +DE D
Sbjct: 245 EDTEDELGD 253
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,462,434
Number of Sequences: 369166
Number of extensions: 2068954
Number of successful extensions: 5585
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5579
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)