Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_I03
(238 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CQI6|COTL1_MOUSE Coactosin-like protein 49 3e-06
sp|Q14019|COTL1_HUMAN Coactosin-like protein 48 6e-06
sp|Q8VHQ7|SYTL4_RAT Synaptotagmin-like protein 4 (Exophilin... 29 3.9
sp|Q96C24|SYTL4_HUMAN Synaptotagmin-like protein 4 (Exophil... 28 6.6
sp|Q9R0Q1|SYTL4_MOUSE Synaptotagmin-like protein 4 (Exophil... 28 8.6
>sp|Q9CQI6|COTL1_MOUSE Coactosin-like protein
Length = 142
Score = 49.3 bits (116), Expect = 3e-06
Identities = 23/47 (48%), Positives = 33/47 (70%)
Frame = +1
Query: 1 KANLTVDKSLVKEVVASYAVDLFTSDKNEITESKLRAALEKAGGANY 141
+A DK+LVKEVV ++A + SD+ E+ E +R+ L+KAGGANY
Sbjct: 91 RAKTGTDKTLVKEVVQNFAKEFVISDRKELEEDFIRSELKKAGGANY 137
>sp|Q14019|COTL1_HUMAN Coactosin-like protein
Length = 142
Score = 48.1 bits (113), Expect = 6e-06
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = +1
Query: 1 KANLTVDKSLVKEVVASYAVDLFTSDKNEITESKLRAALEKAGGANY 141
+A DK+LVKEVV ++A + SD+ E+ E +++ L+KAGGANY
Sbjct: 91 RAKTGTDKTLVKEVVQNFAKEFVISDRKELEEDFIKSELKKAGGANY 137
>sp|Q8VHQ7|SYTL4_RAT Synaptotagmin-like protein 4 (Exophilin-2) (Granuphilin)
Length = 672
Score = 28.9 bits (63), Expect = 3.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 123 SWRC*LWISKINYK*FQNDYFYQNLINKFVF 215
SWRC + +I K D+FY +N+F +
Sbjct: 99 SWRCKVCSKEIELKKATGDWFYDQKVNRFAY 129
>sp|Q96C24|SYTL4_HUMAN Synaptotagmin-like protein 4 (Exophilin-2) (Granuphilin)
Length = 671
Score = 28.1 bits (61), Expect = 6.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 123 SWRC*LWISKINYK*FQNDYFYQNLINKFVF 215
+WRC + +I K D+FY +N+F +
Sbjct: 99 TWRCKVCAKEIELKKATGDWFYDQKVNRFAY 129
>sp|Q9R0Q1|SYTL4_MOUSE Synaptotagmin-like protein 4 (Exophilin-2) (Granuphilin)
Length = 673
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 123 SWRC*LWISKINYK*FQNDYFYQNLINKF 209
SWRC + +I K D+FY +N+F
Sbjct: 99 SWRCKVCSKEIELKKATGDWFYDQKVNRF 127
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,137,361
Number of Sequences: 369166
Number of extensions: 197606
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 68,354,980
effective HSP length: 49
effective length of database: 59,302,965
effective search space used: 1719785985
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)