Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_I02
(877 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor 265 1e-70
sp|P61277|CATK_MACMU Cathepsin K precursor >gi|47117667|sp|... 246 6e-65
sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (C... 246 8e-65
sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein) 244 2e-64
sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine protei... 244 2e-64
sp|Q9GLE3|CATK_PIG Cathepsin K precursor 244 2e-64
sp|Q9JIA9|CATR_MOUSE Cathepsin R precursor 242 9e-64
sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted ... 240 3e-63
sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathe... 239 6e-63
sp|P55097|CATK_MOUSE Cathepsin K precursor 239 1e-62
>sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor
Length = 326
Score = 265 bits (678), Expect = 1e-70
Identities = 125/280 (44%), Positives = 175/280 (62%), Gaps = 2/280 (0%)
Frame = +3
Query: 39 WKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADLTNEEF 218
W +K ++ KEY D+ RR IWE+N+++IQ+HNL DLG T+TLGLNQF D+T EEF
Sbjct: 21 WHQWKRMYNKEYNGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEF 80
Query: 219 RSKYLSKNLMSRSQINSKFVMPYKT--KLNDDEVDWRKKGVVTPVKNQYGCNAGWAFAAT 392
++KYL++ MSR+ +PY+ + D++DWR+ G VT VK+Q C + WAF+ T
Sbjct: 81 KAKYLTE--MSRASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSCWAFSTT 138
Query: 393 GSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYYKPYGMNNEETYPYF 572
G+ EG+Y +SFSE+QL+DCS +GN+GC GG +N++ Y K +G+ E +YPY
Sbjct: 139 GTMEGQYMKNERTSISFSEQQLVDCSGPWGNNGCSGGLMENAYQYLKQFGLETESSYPYT 198
Query: 573 GIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLPSFQFYREGIY 752
++ +C+YN +A V + V +E+++ V A P +D F YR GIY
Sbjct: 199 AVEGQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGARRPAAVAVDVE-SDFMMYRSGIY 257
Query: 753 NDPTCSKTSPNHAVLIVGYGESEGEDYWIVKNSWGAMWGD 872
TCS NHAVL VGYG G DYWIVKNSWG WG+
Sbjct: 258 QSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGTYWGE 297
>sp|P61277|CATK_MACMU Cathepsin K precursor
sp|P61276|CATK_MACFA Cathepsin K precursor
Length = 329
Score = 246 bits (628), Expect = 6e-65
Identities = 124/285 (43%), Positives = 173/285 (60%), Gaps = 3/285 (1%)
Frame = +3
Query: 27 LNNEWKAFKLLFKKEYEP-IDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADL 203
L+ W+ +K +K+Y +DE+ RRLIWE+NL+YI HNLEA LG HT+ L +N D+
Sbjct: 22 LDTHWELWKKTHRKQYNSKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDM 81
Query: 204 TNEEFRSKYLSKNL-MSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCNAGWA 380
TNEE K + S S+ N +P D VD+RKKG VTPVKNQ C + WA
Sbjct: 82 TNEEVVQKMTGLKVPASHSRSNDTLYIPDWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWA 141
Query: 381 FAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYY-KPYGMNNEE 557
F++ G+ EG+ +TG L++ S + L+DC N GC GG N+F Y K G+++E+
Sbjct: 142 FSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSED 199
Query: 558 TYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLPSFQFY 737
YPY G ++ C YN A + ++ NE + AV+ GP++ IDASL SFQFY
Sbjct: 200 AYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 259
Query: 738 REGIYNDPTCSKTSPNHAVLIVGYGESEGEDYWIVKNSWGAMWGD 872
+G+Y D +C+ + NHAVL VGYG +G +WI+KNSWG WG+
Sbjct: 260 SKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGN 304
>sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (Cathepsin X) (Cathepsin O2)
Length = 329
Score = 246 bits (627), Expect = 8e-65
Identities = 123/285 (43%), Positives = 174/285 (61%), Gaps = 3/285 (1%)
Frame = +3
Query: 27 LNNEWKAFKLLFKKEYE-PIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADL 203
L+ W+ +K +K+Y +DE+ RRLIWE+NL+YI HNLEA LG HT+ L +N D+
Sbjct: 22 LDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDM 81
Query: 204 TNEEFRSKYLSKNL-MSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCNAGWA 380
T+EE K + +S S+ N +P D VD+RKKG VTPVKNQ C + WA
Sbjct: 82 TSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWA 141
Query: 381 FAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYY-KPYGMNNEE 557
F++ G+ EG+ +TG L++ S + L+DC N GC GG N+F Y K G+++E+
Sbjct: 142 FSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSED 199
Query: 558 TYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLPSFQFY 737
YPY G ++ C YN A + ++ NE + AV+ GP++ IDASL SFQFY
Sbjct: 200 AYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 259
Query: 738 REGIYNDPTCSKTSPNHAVLIVGYGESEGEDYWIVKNSWGAMWGD 872
+G+Y D +C+ + NHAVL VGYG +G +WI+KNSWG WG+
Sbjct: 260 SKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGN 304
>sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein)
Length = 329
Score = 244 bits (623), Expect = 2e-64
Identities = 122/285 (42%), Positives = 172/285 (60%), Gaps = 3/285 (1%)
Frame = +3
Query: 27 LNNEWKAFKLLFKKEYEP-IDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADL 203
L+ +W+ +K + K+Y +DE+ RRLIWE+NL++I HNLEA LG HT+ L +N D+
Sbjct: 22 LDTQWELWKKTYSKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDM 81
Query: 204 TNEEFRSKYLSKNLM-SRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCNAGWA 380
T+EE K + SRS N +P D +D+RKKG VTPVKNQ C + WA
Sbjct: 82 TSEEVVQKMTGLKVPPSRSHSNDTLYIPDWEGRTPDSIDYRKKGYVTPVKNQGQCGSCWA 141
Query: 381 FAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYY-KPYGMNNEE 557
F++ G+ EG+ +TG L++ S + L+DC N GC GG N+F Y + G+++E+
Sbjct: 142 FSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NYGCGGGYMTNAFQYVQRNRGIDSED 199
Query: 558 TYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLPSFQFY 737
YPY G + C YN A + ++ NE + AV+ GP++ IDASL SFQFY
Sbjct: 200 AYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 259
Query: 738 REGIYNDPTCSKTSPNHAVLIVGYGESEGEDYWIVKNSWGAMWGD 872
+G+Y D CS + NHAVL VGYG +G +WI+KNSWG WG+
Sbjct: 260 SKGVYYDENCSSDNVNHAVLAVGYGIQKGNKHWIIKNSWGESWGN 304
>sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine proteinase 1) [Contains: Cathepsin
L heavy chain; Cathepsin L light chain]
Length = 341
Score = 244 bits (623), Expect = 2e-64
Identities = 128/290 (44%), Positives = 175/290 (60%), Gaps = 11/290 (3%)
Frame = +3
Query: 36 EWKAFKLLFKKEYEP-IDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADLTNE 212
EW FKL +K Y+ +E R I+ EN I KHN GK +F L +N++ADL +
Sbjct: 28 EWHTFKLEHRKNYQDETEERFRLKIFNENKHKIAKHNQRFAEGKVSFKLAVNKYADLLHH 87
Query: 213 EFRSKYLSKNLMSRSQINSK--------FVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCN 368
EFR N Q+ + F+ P L VDWR KG VT VK+Q C
Sbjct: 88 EFRQLMNGFNYTLHKQLRAADESFKGVTFISPAHVTL-PKSVDWRTKGAVTAVKDQGHCG 146
Query: 369 AGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYYKPY-GM 545
+ WAF++TG+ EG++ ++GVL+S SE+ L+DCS YGN+GC GG DN+F Y K G+
Sbjct: 147 SCWAFSSTGALEGQHFRKSGVLVSLSEQNLVDCSTKYGNNGCNGGLMDNAFRYIKDNGGI 206
Query: 546 NNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLPS 725
+ E++YPY I D C +N +V A F D+ + +E ++A AV+ GP++ IDAS S
Sbjct: 207 DTEKSYPYEAIDDSCHFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHES 266
Query: 726 FQFYREGIYNDPTCSKTSPNHAVLIVGYGESE-GEDYWIVKNSWGAMWGD 872
FQFY EG+YN+P C + +H VL+VG+G E GEDYW+VKNSWG WGD
Sbjct: 267 FQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGD 316
>sp|Q9GLE3|CATK_PIG Cathepsin K precursor
Length = 330
Score = 244 bits (623), Expect = 2e-64
Identities = 121/285 (42%), Positives = 174/285 (61%), Gaps = 3/285 (1%)
Frame = +3
Query: 27 LNNEWKAFKLLFKKEYEP-IDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADL 203
L+ +W+ +K ++K+Y +DE+ RRLIWE+NL++I HNLEA LG HT+ L +N D+
Sbjct: 23 LDTQWELWKKTYRKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDM 82
Query: 204 TNEEFRSKYLSKNLM-SRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCNAGWA 380
T+EE K + S S+ N +P D +D+RKKG VTPVKNQ C + WA
Sbjct: 83 TSEEVVQKMTGLKVPPSHSRSNDTLYIPDWEGRTPDSIDYRKKGYVTPVKNQGQCGSCWA 142
Query: 381 FAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYY-KPYGMNNEE 557
F++ G+ EG+ +TG L++ S + L+DC N GC GG N+F Y K G+++E+
Sbjct: 143 FSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSED 200
Query: 558 TYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLPSFQFY 737
YPY G + C YN A + ++ NE + AV+ GP++ IDASL SFQFY
Sbjct: 201 AYPYVGQDENCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 260
Query: 738 REGIYNDPTCSKTSPNHAVLIVGYGESEGEDYWIVKNSWGAMWGD 872
+G+Y D C+ + NHAVL VGYG +G+ +WI+KNSWG WG+
Sbjct: 261 SKGVYYDENCNSDNLNHAVLAVGYGIQKGKKHWIIKNSWGENWGN 305
>sp|Q9JIA9|CATR_MOUSE Cathepsin R precursor
Length = 334
Score = 242 bits (618), Expect = 9e-64
Identities = 122/293 (41%), Positives = 181/293 (61%), Gaps = 6/293 (2%)
Frame = +3
Query: 9 PTINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLN 188
P +++ L+ EW+ +K+ + K Y +E ++R++WEE L+ I+ HN E LGK+ FT+ +N
Sbjct: 19 PVLDSSLDAEWQDWKIKYNKSYSLKEEKLKRVVWEEKLKMIKLHNRENSLGKNGFTMKMN 78
Query: 189 QFADLTNEEFRSKYLSKNLMSRSQINSKFVMPYKT-KLNDDEVDWRKKGVVTPVKNQYGC 365
+F D T+EEFR + ++ + + K +M + + VDWRKKG VTPV+ Q C
Sbjct: 79 EFGDQTDEEFRKMMIEISVWTHRE--GKSIMKREAGSILPKFVDWRKKGYVTPVRRQGDC 136
Query: 366 NAGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNY-YKPYG 542
+A WAFA TG+ E + QTG L S + L+DCS GN+GC GG N+F Y G
Sbjct: 137 DACWAFAVTGAIEAQAIWQTGKLTPLSVQNLVDCSKPQGNNGCLGGDTYNAFQYVLHNGG 196
Query: 543 MNNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLP 722
+ +E TYPY G C+YN + A + F+ + ++ +I + AAV+ GP+TA IDAS
Sbjct: 197 LESEATYPYEGKDGPCRYNPKNSKAEITGFVSLPQSEDI-LMAAVATIGPITAGIDASHE 255
Query: 723 SFQFYREGIYNDPTCSKTSPNHAVLIVGYG----ESEGEDYWIVKNSWGAMWG 869
SF+ Y+ GIY++P CS + H VL+VGYG E++G YW++KNSWG WG
Sbjct: 256 SFKNYKGGIYHEPNCSSDTVTHGVLVVGYGFKGIETDGNHYWLIKNSWGKRWG 308
>sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted protein) (MEP) [Contains:
Cathepsin L heavy chain; Cathepsin L light chain]
Length = 333
Score = 240 bits (613), Expect = 3e-63
Identities = 122/291 (41%), Positives = 172/291 (59%), Gaps = 5/291 (1%)
Frame = +3
Query: 12 TINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQ 191
T + L +W +K + + Y +E RR +WE+N++ I+ HN E GKH+FT+ +N
Sbjct: 20 TFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNA 79
Query: 192 FADLTNEEFRSKYLSKNLMSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCNA 371
F D+T+EEFR + +R K VDWR+KG VTPVKNQ C +
Sbjct: 80 FGDMTSEEFRQ--VMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGS 137
Query: 372 GWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYYKPY-GMN 548
WAF+ATG+ EG+ +TG L+S SE+ L+DCS GN GC GG D +F Y + G++
Sbjct: 138 CWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLD 197
Query: 549 NEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLPSF 728
+EE+YPY ++ CKYN +A+ F+D+ + E + AV+ GP++ IDA SF
Sbjct: 198 SEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESF 256
Query: 729 QFYREGIYNDPTCSKTSPNHAVLIVGYG----ESEGEDYWIVKNSWGAMWG 869
FY+EGIY +P CS +H VL+VGYG ES+ YW+VKNSWG WG
Sbjct: 257 LFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 307
>sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 333
Score = 239 bits (611), Expect = 6e-63
Identities = 128/293 (43%), Positives = 176/293 (60%), Gaps = 6/293 (2%)
Frame = +3
Query: 9 PTINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLN 188
P + LN +W +K ++ Y +E RR +WE+N++ I+ HN E GKH FT+ +N
Sbjct: 19 PKFDQSLNAQWYQWKATHRRLYGMNEEGWRRAVWEKNMKMIELHNREYSQGKHGFTMAMN 78
Query: 189 QFADLTNEEFRSKYLSKNLMSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCN 368
F D+TNEEFR + ++ + + F P ++ VDWR+KG VTPVKNQ C
Sbjct: 79 AFGDMTNEEFR-QVMNGFQNQKHKKGKMFQEPLFAEI-PKSVDWREKGYVTPVKNQGQCG 136
Query: 369 AGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYYKPY-GM 545
+ WAF+ATG+ EG+ +TG L+S SE+ L+DCS A GN GC GG DN+F Y K G+
Sbjct: 137 SCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNEGCNGGLMDNAFRYVKDNGGL 196
Query: 546 NNEETYPYFG-IKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLP 722
++EE+YPY G + C Y A+ F+D+ + E + AV+ GP++ IDA
Sbjct: 197 DSEESYPYLGRDTETCNYKPECSAANDTGFVDLPQ-REKALMKAVATLGPISVAIDAGHQ 255
Query: 723 SFQFYREGIYNDPTCSKTSPNHAVLIVGYGESEGED----YWIVKNSWGAMWG 869
SFQFY+ GIY DP CS +H VL+VGYG EG D +WIVKNSWG WG
Sbjct: 256 SFQFYKSGIYFDPDCSSKDLDHGVLVVGYG-FEGTDSNNKFWIVKNSWGPEWG 307
>sp|P55097|CATK_MOUSE Cathepsin K precursor
Length = 329
Score = 239 bits (609), Expect = 1e-62
Identities = 120/285 (42%), Positives = 170/285 (59%), Gaps = 3/285 (1%)
Frame = +3
Query: 27 LNNEWKAFKLLFKKEYEP-IDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADL 203
L+ +W+ +K +K+Y +DE+ RRLIWE+NL+ I HNLEA LG HT+ L +N D+
Sbjct: 22 LDTQWELWKKTHQKQYNSKVDEISRRLIWEKNLKQISAHNLEASLGVHTYELAMNHLGDM 81
Query: 204 TNEEFRSKYLSKNLM-SRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCNAGWA 380
T+EE K + SRS N P D +D+RKKG VTPVKNQ C + WA
Sbjct: 82 TSEEVVQKMTGLRIPPSRSYSNDTLYTPEWEGRVPDSIDYRKKGYVTPVKNQGQCGSCWA 141
Query: 381 FAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYYKPYG-MNNEE 557
F++ G+ EG+ +TG L++ S + L+DC N GC GG +F Y + G +++E+
Sbjct: 142 FSSAGALEGQLKKKTGKLLALSPQNLVDCVTE--NYGCGGGYMTTAFQYVQQNGGIDSED 199
Query: 558 TYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLPSFQFY 737
YPY G + C YN + A + ++ NE + AV+ GP++ IDASL SFQFY
Sbjct: 200 AYPYVGQDESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPISVSIDASLASFQFY 259
Query: 738 REGIYNDPTCSKTSPNHAVLIVGYGESEGEDYWIVKNSWGAMWGD 872
G+Y D C + + NHAVL+VGYG +G +WI+KNSWG WG+
Sbjct: 260 SRGVYYDENCDRDNVNHAVLVVGYGTQKGSKHWIIKNSWGESWGN 304
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,398,311
Number of Sequences: 369166
Number of extensions: 1877528
Number of successful extensions: 5845
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5321
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)