Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_H22
(604 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9A0L9|ADCA_STRP1 Zinc-binding protein adcA precursor 33 0.56
sp|P37627|YHIJ_ECOLI Hypothetical protein yhiJ 33 0.73
sp|Q5XD15|ADCA_STRP6 Zinc-binding protein adcA precursor 30 6.2
sp|Q8P1N2|ADCA_STRP8 Zinc-binding protein adcA precursor 30 6.2
sp|P38851|YHV5_YEAST Hypothetical 143.6 kDa protein in SPO1... 29 8.0
sp|Q891U1|MUTS2_CLOTE MutS2 protein 29 8.0
sp|Q9U5N0|VATH_MANSE Vacuolar ATP synthase subunit H (V-ATP... 29 8.0
>sp|Q9A0L9|ADCA_STRP1 Zinc-binding protein adcA precursor
Length = 515
Score = 33.1 bits (74), Expect = 0.56
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 432 NFLCVTGSQTSQPHINSPDRYEHANHNNDTNNHSF 328
N L V G+ PH ++ ++EH H+ + +NH+F
Sbjct: 115 NMLLVAGAGHDHPHEDADKKHEHNKHSEEGHNHAF 149
>sp|P37627|YHIJ_ECOLI Hypothetical protein yhiJ
Length = 540
Score = 32.7 bits (73), Expect = 0.73
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 34 NNCSMLYILKCGTCNEEQNQIAETESIAKINEWK 135
N CS++Y+L T N+ N +A TES I WK
Sbjct: 127 NWCSIVYLLNNMTVNDNANDVAVTESYKPIWNWK 160
>sp|Q5XD15|ADCA_STRP6 Zinc-binding protein adcA precursor
Length = 515
Score = 29.6 bits (65), Expect = 6.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 432 NFLCVTGSQTSQPHINSPDRYEHANHNNDTNNHSF 328
N L V G+ H ++ ++EH H+ + +NH+F
Sbjct: 115 NMLLVAGAGHDHHHEDADKKHEHNKHSEEGHNHAF 149
>sp|Q8P1N2|ADCA_STRP8 Zinc-binding protein adcA precursor
Length = 515
Score = 29.6 bits (65), Expect = 6.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 432 NFLCVTGSQTSQPHINSPDRYEHANHNNDTNNHSF 328
N L V G+ H ++ ++EH H+ + +NH+F
Sbjct: 115 NMLLVAGAGHDHHHEDADKKHEHNKHSEEGHNHAF 149
>sp|P38851|YHV5_YEAST Hypothetical 143.6 kDa protein in SPO16-REC104 intergenic region
Length = 1228
Score = 29.3 bits (64), Expect = 8.0
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 14/106 (13%)
Frame = +1
Query: 34 NNCSMLYILKCGTCNEEQNQ----IAETESIAKINEWKKTCASSKRL--------DNFYQ 177
N C L I EE+N I + ESI ++ W T S KR+ D YQ
Sbjct: 376 NFCFKLRIQNPNCKTEEENTYIDIILQAESIDELKSWINTLTSHKRIALSIKEENDPRYQ 435
Query: 178 AINRKIIFQTDEMVPEIIFRAE--IHSFGSYMMTKLHKTNTAYLKE 309
+KI Q E + + SF S +T + + Y+ E
Sbjct: 436 LARKKIEPQFFEFASSSSTSTDKLLTSFSSKTLTLVEELKKNYMSE 481
>sp|Q891U1|MUTS2_CLOTE MutS2 protein
Length = 786
Score = 29.3 bits (64), Expect = 8.0
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 29 KVITALCFIFLNVEHVTRNRIKLPKRNQ*R--KLMSGKRHVLLQKDWIIFTKL*IGKSYS 202
KVI L FIF + + N LPK ++ ++ GK H L+ + ++ T + +GK ++
Sbjct: 268 KVIWELDFIFAKAKFASHNNCTLPKVSEDGIVDIIEGK-HPLIDTEKVVPTDIYLGKDFT 326
Query: 203 KL 208
L
Sbjct: 327 SL 328
>sp|Q9U5N0|VATH_MANSE Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit) (Vacuolar proton pump subunit
SFD)
Length = 475
Score = 29.3 bits (64), Expect = 8.0
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +1
Query: 124 NEWKKTCASSKRLDNFYQAINRKIIFQTDEMVPEIIFRAEIHSFGSYMMTKLHKTNTAYL 303
N W+ R D F Q + +II + P+++ ++++H + S++ +L N Y+
Sbjct: 126 NIWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKMNNNDYI 185
Query: 304 K 306
+
Sbjct: 186 Q 186
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,528,891
Number of Sequences: 369166
Number of extensions: 1109572
Number of successful extensions: 2494
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2472
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4650991475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)