Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_H20
(913 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24639|ANXA7_DICDI Annexin A7 (Annexin VII) (Synexin) 37 0.10
sp|Q92734|TFG_HUMAN Protein TFG (TRK-fused gene protein) 34 0.65
sp|Q15532|SSXT_HUMAN SSXT protein (Synovial sarcoma, transl... 33 1.4
sp|Q10172|YDC9_SCHPO Hypothetical protein C25G10.09c in chr... 32 3.2
sp|P04723|GDA3_WHEAT Alpha/beta-gliadin A-III precursor (Pr... 31 4.2
sp|P48614|WN10B_MOUSE Wnt-10b protein precursor (Wnt-12) 30 7.2
sp|Q62280|SSXT_MOUSE SSXT protein (SYT protein) (Synovial s... 30 7.2
sp|O00744|WN1B_HUMAN Wnt-10b protein precursor (Wnt-12) 30 7.2
sp|P49339|WNT11_CHICK Wnt-11 protein precursor 30 9.4
sp|P51891|WNT11_COTJA Wnt-11 protein precursor 30 9.4
>sp|P24639|ANXA7_DICDI Annexin A7 (Annexin VII) (Synexin)
Length = 462
Score = 36.6 bits (83), Expect = 0.10
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Frame = +3
Query: 417 GYPQNRPYAPQTPY--QAGQVQATNYPRQQGYTPGVSQPY----VAGTNYGQPVSYAAG 575
GYP + Y PQ Y Q G YP QQGY P P G G PV +A G
Sbjct: 87 GYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQGYPPQQGYPPVGVPVGVPVGFAPG 145
Score = 36.2 bits (82), Expect = 0.13
Identities = 23/61 (37%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = +3
Query: 417 GYPQNRPYAPQTPY--QAGQVQATNYPRQQGYTPGVSQPYVAGTNYGQPVSYAAGQPSQT 590
GYP + Y PQ Y Q G YP QQGY P P G Q G P Q
Sbjct: 63 GYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQG 122
Query: 591 Y 593
Y
Sbjct: 123 Y 123
Score = 35.0 bits (79), Expect = 0.29
Identities = 23/63 (36%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Frame = +3
Query: 405 ATYSGYPQNRPYAPQTPY--QAGQVQATNYPRQQGYTPGVSQPYVAGTNYGQPVSYAAGQ 578
A GYP + Y PQ Y Q G YP QQGY P P G Q G
Sbjct: 23 APQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGY 82
Query: 579 PSQ 587
P Q
Sbjct: 83 PPQ 85
Score = 34.3 bits (77), Expect = 0.50
Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +3
Query: 417 GYPQNRPYAPQTPY--QAGQVQATNYPRQQGYTPGVSQPYVAGTNYGQPVSYAAGQPSQ 587
GYP + Y PQ Y Q G YP QQGY P P G Q G P Q
Sbjct: 33 GYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQ 91
Score = 34.3 bits (77), Expect = 0.50
Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +3
Query: 417 GYPQNRPYAPQTPY--QAGQVQATNYPRQQGYTPGVSQPYVAGTNYGQPVSYAAGQPSQ 587
GYP + Y PQ Y Q G YP QQGY P P G Q G P Q
Sbjct: 39 GYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQ 97
Score = 34.3 bits (77), Expect = 0.50
Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +3
Query: 417 GYPQNRPYAPQTPY--QAGQVQATNYPRQQGYTPGVSQPYVAGTNYGQPVSYAAGQPSQ 587
GYP + Y PQ Y Q G YP QQGY P P G Q G P Q
Sbjct: 45 GYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQ 103
Score = 34.3 bits (77), Expect = 0.50
Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +3
Query: 417 GYPQNRPYAPQTPY--QAGQVQATNYPRQQGYTPGVSQPYVAGTNYGQPVSYAAGQPSQ 587
GYP + Y PQ Y Q G YP QQGY P P G Q G P Q
Sbjct: 51 GYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQ 109
Score = 34.3 bits (77), Expect = 0.50
Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +3
Query: 417 GYPQNRPYAPQTPY--QAGQVQATNYPRQQGYTPGVSQPYVAGTNYGQPVSYAAGQPSQ 587
GYP + Y PQ Y Q G YP QQGY P P G Q G P Q
Sbjct: 57 GYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQ 115
>sp|Q92734|TFG_HUMAN Protein TFG (TRK-fused gene protein)
Length = 400
Score = 33.9 bits (76), Expect = 0.65
Identities = 26/60 (43%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 411 YSGYPQNRPYAPQTPYQAGQVQATNYPRQQGYTPGVSQPYVAGTNYG-QPVSYAAGQPSQ 587
+SG PQ P P Y QA+NYP Q YT SQP TNY P S PSQ
Sbjct: 304 FSGQPQQLPAQPPQQY-----QASNYPAQT-YTAQTSQP----TNYTVAPASQPGMAPSQ 353
>sp|Q15532|SSXT_HUMAN SSXT protein (Synovial sarcoma, translocated to X chromosome) (SYT
protein)
Length = 418
Score = 32.7 bits (73), Expect = 1.4
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +3
Query: 411 YSGYPQNRPYAPQTPYQAGQVQATNYP-RQQGYTPGVSQPYVAGTNY--GQPVSYAAGQP 581
Y G P + Y PQ GQ YP +QQGY P P NY GQ Y +P
Sbjct: 336 YQGPPPQQGYPPQQQQYPGQ---QGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRP 392
Query: 582 SQ 587
+Q
Sbjct: 393 TQ 394
>sp|Q10172|YDC9_SCHPO Hypothetical protein C25G10.09c in chromosome I
Length = 1794
Score = 31.6 bits (70), Expect = 3.2
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +3
Query: 426 QNRPYAPQTPYQAGQ-----VQATNYPRQQGYTPGVSQPYVAGTNYGQPVSY-AAGQPS 584
++ PYAPQ P Q Q ATN Q ++P + N G P++ AAGQPS
Sbjct: 1557 RSSPYAPQEPVQKPQAINNIAPATNLGTSQSFSPRMGPV----NNSGSPLAMNAAGQPS 1611
>sp|P04723|GDA3_WHEAT Alpha/beta-gliadin A-III precursor (Prolamin)
Length = 282
Score = 31.2 bits (69), Expect = 4.2
Identities = 20/56 (35%), Positives = 24/56 (42%)
Frame = +3
Query: 420 YPQNRPYAPQTPYQAGQVQATNYPRQQGYTPGVSQPYVAGTNYGQPVSYAAGQPSQ 587
YPQ +P+ PQ PY Q +P QQ Y QP QP+S Q Q
Sbjct: 76 YPQPQPFPPQLPYP----QTQPFPPQQPY----PQPQPQYPQPQQPISQQQAQQQQ 123
>sp|P48614|WN10B_MOUSE Wnt-10b protein precursor (Wnt-12)
Length = 389
Score = 30.4 bits (67), Expect = 7.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 638 KRCHWNCRWCCYSLCSK 688
+RCH WCCY LC +
Sbjct: 362 ERCHCRFHWCCYVLCDE 378
>sp|Q62280|SSXT_MOUSE SSXT protein (SYT protein) (Synovial sarcoma associated Ss18-alpha)
Length = 418
Score = 30.4 bits (67), Expect = 7.2
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +3
Query: 411 YSGYPQNRPYAPQTPYQAGQVQATNYP-RQQGYTPGVSQPYVAGTNY--GQPVSYAAGQP 581
Y G P + Y PQ GQ YP +QQ Y P P NY GQ Y +P
Sbjct: 336 YQGPPPQQGYPPQQQQYPGQ---QGYPGQQQSYGPSQGGPGPQYPNYPQGQGQQYGGYRP 392
Query: 582 SQ 587
+Q
Sbjct: 393 TQ 394
>sp|O00744|WN1B_HUMAN Wnt-10b protein precursor (Wnt-12)
Length = 389
Score = 30.4 bits (67), Expect = 7.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 638 KRCHWNCRWCCYSLCSK 688
+RCH WCCY LC +
Sbjct: 362 ERCHCRFHWCCYVLCDE 378
>sp|P49339|WNT11_CHICK Wnt-11 protein precursor
Length = 354
Score = 30.0 bits (66), Expect = 9.4
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 638 KRCHWNCRWCCYSLCSK 688
+RCH WCCY C K
Sbjct: 327 ERCHCKYHWCCYVTCKK 343
>sp|P51891|WNT11_COTJA Wnt-11 protein precursor
Length = 354
Score = 30.0 bits (66), Expect = 9.4
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 638 KRCHWNCRWCCYSLCSK 688
+RCH WCCY C K
Sbjct: 327 ERCHCKYHWCCYVTCKK 343
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,889,302
Number of Sequences: 369166
Number of extensions: 1312710
Number of successful extensions: 4112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4071
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9270587090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)