Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_H12
(465 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P16889|H2BN_STRPU Late histone H2B.L3 169 2e-42
sp|Q7M4G7|H2B_ASTPE Histone H2B 169 2e-42
sp|P21897|H2B_CHITH Histone H2B 169 3e-42
sp|P02286|H2B_ASTRU Histone H2B, gonadal 168 5e-42
sp|P02285|H2B_MARGL Histone H2B, sperm 168 5e-42
sp|P07794|H2B3_PSAMI Late histone H2B.2.1 168 5e-42
sp|P35068|H2B1_TIGCA Histone H2B.1/H2B.2 168 5e-42
sp|P35069|H2B3_TIGCA Histone H2B.3 168 5e-42
sp|Q76FD7|H2B_DROSE Histone H2B >gi|122053|sp|P17271|H2B_DR... 168 6e-42
sp|P02283|H2B_DROME Histone H2B >gi|51701476|sp|Q76FF3|H2B_... 168 6e-42
>sp|P16889|H2BN_STRPU Late histone H2B.L3
Length = 123
Score = 169 bits (429), Expect = 2e-42
Identities = 85/94 (90%), Positives = 90/94 (95%)
Frame = +3
Query: 75 KRKESYGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIATEASKLASYNKKSTITS 254
KRKESYGIYIYKVL+QVHPDTGIS +AMSIMNSFVNDVFERIA EAS+LA YNKKSTITS
Sbjct: 30 KRKESYGIYIYKVLKQVHPDTGISSRAMSIMNSFVNDVFERIAAEASRLAHYNKKSTITS 89
Query: 255 REIQTAVRLILPGELAKHAVSEGTKAVTKYTGSK 356
RE+QTAVRL+LPGELAKHAVSEGTKAVTKYT SK
Sbjct: 90 REVQTAVRLLLPGELAKHAVSEGTKAVTKYTTSK 123
>sp|Q7M4G7|H2B_ASTPE Histone H2B
Length = 121
Score = 169 bits (429), Expect = 2e-42
Identities = 84/94 (89%), Positives = 90/94 (95%)
Frame = +3
Query: 75 KRKESYGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIATEASKLASYNKKSTITS 254
KRKESYGIYIYKV++QVHPDTGIS KAMSIMNSFVND+FERIA EAS+LA YNKKSTITS
Sbjct: 28 KRKESYGIYIYKVMKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKKSTITS 87
Query: 255 REIQTAVRLILPGELAKHAVSEGTKAVTKYTGSK 356
RE+QTAVRL+LPGELAKHAVSEGTKAVTKYT SK
Sbjct: 88 REVQTAVRLLLPGELAKHAVSEGTKAVTKYTTSK 121
>sp|P21897|H2B_CHITH Histone H2B
Length = 125
Score = 169 bits (428), Expect = 3e-42
Identities = 83/95 (87%), Positives = 90/95 (94%)
Frame = +3
Query: 72 HKRKESYGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIATEASKLASYNKKSTIT 251
HKRKESY IYI+KVL+QVHPDTG+S KAMSIMNSFVND+FERIA EAS+LA YNK+STIT
Sbjct: 31 HKRKESYAIYIFKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTIT 90
Query: 252 SREIQTAVRLILPGELAKHAVSEGTKAVTKYTGSK 356
SREIQTAVRL+LPGELAKHAVSEGTKAVTKYT SK
Sbjct: 91 SREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 125
>sp|P02286|H2B_ASTRU Histone H2B, gonadal
Length = 121
Score = 168 bits (426), Expect = 5e-42
Identities = 83/94 (88%), Positives = 90/94 (95%)
Frame = +3
Query: 75 KRKESYGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIATEASKLASYNKKSTITS 254
KRKESYGIYIYKV++QVHPDTGIS +AMSIMNSFVND+FERIA EAS+LA YNKKSTITS
Sbjct: 28 KRKESYGIYIYKVMKQVHPDTGISSRAMSIMNSFVNDIFERIAAEASRLAHYNKKSTITS 87
Query: 255 REIQTAVRLILPGELAKHAVSEGTKAVTKYTGSK 356
RE+QTAVRL+LPGELAKHAVSEGTKAVTKYT SK
Sbjct: 88 REVQTAVRLLLPGELAKHAVSEGTKAVTKYTTSK 121
>sp|P02285|H2B_MARGL Histone H2B, sperm
Length = 120
Score = 168 bits (426), Expect = 5e-42
Identities = 83/94 (88%), Positives = 90/94 (95%)
Frame = +3
Query: 75 KRKESYGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIATEASKLASYNKKSTITS 254
KRKESYGIYIYKV++QVHPDTGIS +AMSIMNSFVND+FERIA EAS+LA YNKKSTITS
Sbjct: 27 KRKESYGIYIYKVMKQVHPDTGISSRAMSIMNSFVNDIFERIAAEASRLAHYNKKSTITS 86
Query: 255 REIQTAVRLILPGELAKHAVSEGTKAVTKYTGSK 356
RE+QTAVRL+LPGELAKHAVSEGTKAVTKYT SK
Sbjct: 87 REVQTAVRLLLPGELAKHAVSEGTKAVTKYTTSK 120
>sp|P07794|H2B3_PSAMI Late histone H2B.2.1
Length = 124
Score = 168 bits (426), Expect = 5e-42
Identities = 85/94 (90%), Positives = 90/94 (95%)
Frame = +3
Query: 75 KRKESYGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIATEASKLASYNKKSTITS 254
KRKESYGIYIYKVL+QVHPDTGIS KAMSIMNSFVNDVFERIA EAS+LA YNKKSTI+S
Sbjct: 31 KRKESYGIYIYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKKSTISS 90
Query: 255 REIQTAVRLILPGELAKHAVSEGTKAVTKYTGSK 356
RE+QTAVRL+LPGELAKHAVSEGTKAVTKYT SK
Sbjct: 91 REVQTAVRLLLPGELAKHAVSEGTKAVTKYTTSK 124
>sp|P35068|H2B1_TIGCA Histone H2B.1/H2B.2
Length = 123
Score = 168 bits (426), Expect = 5e-42
Identities = 84/94 (89%), Positives = 90/94 (95%)
Frame = +3
Query: 75 KRKESYGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIATEASKLASYNKKSTITS 254
KRKESY IYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIA+EAS+LA YNK+STITS
Sbjct: 30 KRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITS 89
Query: 255 REIQTAVRLILPGELAKHAVSEGTKAVTKYTGSK 356
REIQTAVRL+LPGELAKHAVSEGTKAVTKYT SK
Sbjct: 90 REIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P35069|H2B3_TIGCA Histone H2B.3
Length = 123
Score = 168 bits (426), Expect = 5e-42
Identities = 84/94 (89%), Positives = 90/94 (95%)
Frame = +3
Query: 75 KRKESYGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIATEASKLASYNKKSTITS 254
KRKESY IYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIA+EAS+LA YNK+STITS
Sbjct: 30 KRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITS 89
Query: 255 REIQTAVRLILPGELAKHAVSEGTKAVTKYTGSK 356
REIQTAVRL+LPGELAKHAVSEGTKAVTKYT SK
Sbjct: 90 REIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|Q76FD7|H2B_DROSE Histone H2B
sp|P17271|H2B_DROHY Histone H2B
Length = 123
Score = 168 bits (425), Expect = 6e-42
Identities = 84/94 (89%), Positives = 89/94 (94%)
Frame = +3
Query: 75 KRKESYGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIATEASKLASYNKKSTITS 254
KRKESY IYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIA EAS+LA YNK+STITS
Sbjct: 30 KRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITS 89
Query: 255 REIQTAVRLILPGELAKHAVSEGTKAVTKYTGSK 356
REIQTAVRL+LPGELAKHAVSEGTKAVTKYT SK
Sbjct: 90 REIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P02283|H2B_DROME Histone H2B
sp|Q76FF3|H2B_DROTE Histone H2B
sp|P59782|H2B_DROSI Histone H2B
sp|Q76FE9|H2B_DROOR Histone H2B
sp|Q76FE5|H2B_DROMA Histone H2B
sp|P59781|H2B_DROER Histone H2B
Length = 123
Score = 168 bits (425), Expect = 6e-42
Identities = 84/94 (89%), Positives = 89/94 (94%)
Frame = +3
Query: 75 KRKESYGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIATEASKLASYNKKSTITS 254
KRKESY IYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIA EAS+LA YNK+STITS
Sbjct: 30 KRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITS 89
Query: 255 REIQTAVRLILPGELAKHAVSEGTKAVTKYTGSK 356
REIQTAVRL+LPGELAKHAVSEGTKAVTKYT SK
Sbjct: 90 REIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,389,968
Number of Sequences: 369166
Number of extensions: 752665
Number of successful extensions: 1875
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1873
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2633927485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)