Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_H05-2
(134 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22) 97 1e-20
sp|P18445|RL27A_RAT 60S ribosomal protein L27a 97 1e-20
sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29) 97 1e-20
sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a >gi|117301... 95 6e-20
sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a 95 6e-20
sp|Q27021|RL27A_TENMO 60S ribosomal protein L27a 93 2e-19
sp|P41092|RL27A_DROME 60S ribosomal protein L27a 92 3e-19
sp|P49637|RL27C_ARATH 60S ribosomal protein L27a-3 91 6e-19
sp|Q9LR33|RL27A_ARATH 60S ribosomal protein L27a-2 91 6e-19
sp|P08978|RL28_NEUCR 60S ribosomal protein L28 (L27A) (L29)... 90 1e-18
>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22)
Length = 148
Score = 96.7 bits (239), Expect = 1e-20
Identities = 38/42 (90%), Positives = 41/42 (97%)
Frame = +1
Query: 7 RVGKHRKHPGGRGNAGGQHHHRIHFDKFHPGYFGKVGMRHYH 132
R+GKHRKHPGGRGNAGG HHHRI+FDK+HPGYFGKVGMRHYH
Sbjct: 21 RIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYH 62
>sp|P18445|RL27A_RAT 60S ribosomal protein L27a
Length = 148
Score = 96.7 bits (239), Expect = 1e-20
Identities = 38/42 (90%), Positives = 41/42 (97%)
Frame = +1
Query: 7 RVGKHRKHPGGRGNAGGQHHHRIHFDKFHPGYFGKVGMRHYH 132
R+GKHRKHPGGRGNAGG HHHRI+FDK+HPGYFGKVGMRHYH
Sbjct: 21 RIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYH 62
>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29)
Length = 148
Score = 96.7 bits (239), Expect = 1e-20
Identities = 38/42 (90%), Positives = 41/42 (97%)
Frame = +1
Query: 7 RVGKHRKHPGGRGNAGGQHHHRIHFDKFHPGYFGKVGMRHYH 132
R+GKHRKHPGGRGNAGG HHHRI+FDK+HPGYFGKVGMRHYH
Sbjct: 21 RIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYH 62
>sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a
sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a
Length = 148
Score = 94.7 bits (234), Expect = 6e-20
Identities = 37/42 (88%), Positives = 41/42 (97%)
Frame = +1
Query: 7 RVGKHRKHPGGRGNAGGQHHHRIHFDKFHPGYFGKVGMRHYH 132
R+GKHRKHPGGRGNAGG HHHRI+FDK+HPGYFGKVGM+HYH
Sbjct: 21 RIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYH 62
>sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a
Length = 148
Score = 94.7 bits (234), Expect = 6e-20
Identities = 37/42 (88%), Positives = 41/42 (97%)
Frame = +1
Query: 7 RVGKHRKHPGGRGNAGGQHHHRIHFDKFHPGYFGKVGMRHYH 132
R+GKHRKHPGGRGNAGG HHHRI+FDK+HPGYFGKVGM+HYH
Sbjct: 21 RIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYH 62
>sp|Q27021|RL27A_TENMO 60S ribosomal protein L27a
Length = 148
Score = 92.8 bits (229), Expect = 2e-19
Identities = 36/42 (85%), Positives = 41/42 (97%)
Frame = +1
Query: 7 RVGKHRKHPGGRGNAGGQHHHRIHFDKFHPGYFGKVGMRHYH 132
R+GKHRKHPGGRGNAGG HHHRI+FDK+HPGYFGK+GMR+YH
Sbjct: 21 RIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNYH 62
>sp|P41092|RL27A_DROME 60S ribosomal protein L27a
Length = 149
Score = 92.4 bits (228), Expect = 3e-19
Identities = 36/42 (85%), Positives = 41/42 (97%)
Frame = +1
Query: 7 RVGKHRKHPGGRGNAGGQHHHRIHFDKFHPGYFGKVGMRHYH 132
R+GKHRKHPGGRGNAGG HHHRI+FDK+HPGYFGKVGMR++H
Sbjct: 22 RIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFH 63
>sp|P49637|RL27C_ARATH 60S ribosomal protein L27a-3
Length = 146
Score = 91.3 bits (225), Expect = 6e-19
Identities = 36/42 (85%), Positives = 40/42 (95%)
Frame = +1
Query: 7 RVGKHRKHPGGRGNAGGQHHHRIHFDKFHPGYFGKVGMRHYH 132
R+GKHRKHPGGRGNAGG HHHRI FDK+HPGYFGKVGMR++H
Sbjct: 21 RIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
>sp|Q9LR33|RL27A_ARATH 60S ribosomal protein L27a-2
Length = 146
Score = 91.3 bits (225), Expect = 6e-19
Identities = 36/42 (85%), Positives = 40/42 (95%)
Frame = +1
Query: 7 RVGKHRKHPGGRGNAGGQHHHRIHFDKFHPGYFGKVGMRHYH 132
R+GKHRKHPGGRGNAGG HHHRI FDK+HPGYFGKVGMR++H
Sbjct: 21 RIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
>sp|P08978|RL28_NEUCR 60S ribosomal protein L28 (L27A) (L29) (CRP1)
Length = 149
Score = 90.1 bits (222), Expect = 1e-18
Identities = 36/42 (85%), Positives = 39/42 (92%)
Frame = +1
Query: 7 RVGKHRKHPGGRGNAGGQHHHRIHFDKFHPGYFGKVGMRHYH 132
RVGKHRKHPGGRG AGGQHHHR + DK+HPGYFGKVGMRH+H
Sbjct: 21 RVGKHRKHPGGRGMAGGQHHHRTNLDKYHPGYFGKVGMRHFH 62
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,071,441
Number of Sequences: 369166
Number of extensions: 195860
Number of successful extensions: 955
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 68,354,980
effective HSP length: 18
effective length of database: 65,029,750
effective search space used: 1690773500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)