Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_H03
(944 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9C030|TRIM6_HUMAN Tripartite motif protein 6 (RING fing... 30 9.9
sp|Q9GZW8|MS4A7_HUMAN Membrane-spanning 4-domains subfamily... 30 9.9
>sp|Q9C030|TRIM6_HUMAN Tripartite motif protein 6 (RING finger protein 89)
Length = 488
Score = 30.0 bits (66), Expect = 9.9
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Frame = +1
Query: 424 VMGSPSSVDFRFFKGTYNSVIIKIIIELQRLGSVLNPKTITLDFE------YTAYNALKS 585
V+G + ++R ++ + S+++ + + +R+G L+ + T+ F + Y K
Sbjct: 403 VIGLQHNHEYRAYEDSSPSLLLSMTVPPRRVGVFLDYEAGTVSFYNVTNHGFPIYTFSKY 462
Query: 586 QFPTTYCKGFGVTFLIIRVVVTR 654
FPTT C F +I + + R
Sbjct: 463 YFPTTLCPYFNPCNCVIPMTLRR 485
>sp|Q9GZW8|MS4A7_HUMAN Membrane-spanning 4-domains subfamily A member 7
(CD20/FC-epsilon-RI-beta family member 4) (Four-span
transmembrane protein 2) (CD20 antigen-like 4)
Length = 240
Score = 30.0 bits (66), Expect = 9.9
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 96 IYDIDKSILLYFSFQSILIDLILFNAVKLLLGNY-DIFIFKRVY 224
IY+I +L S +L+ +++F ++LLL Y +F +K++Y
Sbjct: 168 IYEIKDCLLTSVSLTGVLVVMLIFTVLELLLAAYSSVFWWKQLY 211
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,643,380
Number of Sequences: 369166
Number of extensions: 1624045
Number of successful extensions: 3153
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3152
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9798962520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)