Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_H01
(774 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9HCC0|MCCC2_HUMAN Methylcrotonoyl-CoA carboxylase beta ... 129 7e-30
sp|Q9V9A7|PCCB_DROME Putative propionyl-CoA carboxylase bet... 108 2e-23
sp|P34385|YLPC_CAEEL Hypothetical protein F02A9.4a in chrom... 103 4e-22
sp|Q9LDD8|MCCB_ARATH Methylcrotonoyl-CoA carboxylase beta c... 66 9e-11
sp|Q06700|GCDA_ACIFE Glutaconyl-CoA decarboxylase alpha sub... 56 1e-07
sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 1... 39 0.012
sp|P53003|PCCB_SACER Propionyl-CoA carboxylase beta chain (... 35 0.30
sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, ... 33 0.86
sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mi... 33 1.1
sp|Q06101|PCCB_RHOER Propionyl-CoA carboxylase beta chain (... 30 5.6
>sp|Q9HCC0|MCCC2_HUMAN Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor
(3-Methylcrotonyl-CoA carboxylase 2) (MCCase beta
subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
beta subunit) (3-Methylcrotonyl-CoA carboxylase
non-biotin-containing subunit)
Length = 563
Score = 129 bits (325), Expect = 7e-30
Identities = 58/93 (62%), Positives = 76/93 (81%)
Frame = +2
Query: 494 CRRSGVTDHYAMNDKDAIHITRSIVRNLNRHKRMSVAFEKPEQPRYPADELYGIVGANLK 673
CR+SGV+DH+A++D A+H+TR +VRNLN K++ V E E+P +PADELYGIVGANLK
Sbjct: 267 CRKSGVSDHWALDDHHALHLTRKVVRNLNYQKKLDVTIEPSEEPLFPADELYGIVGANLK 326
Query: 674 RTFNMYEVIARIVDGSKMQEFKPLYGETLICGF 772
R+F++ EVIARIVDGS+ EFK YG+TL+ GF
Sbjct: 327 RSFDVREVIARIVDGSRFTEFKAFYGDTLVTGF 359
>sp|Q9V9A7|PCCB_DROME Putative propionyl-CoA carboxylase beta chain, mitochondrial
precursor (PCCase beta subunit) (Propanoyl-CoA:carbon
dioxide ligase beta subunit)
Length = 578
Score = 108 bits (269), Expect = 2e-23
Identities = 57/109 (52%), Positives = 73/109 (66%), Gaps = 16/109 (14%)
Frame = +2
Query: 494 CRRSGVTDHYAMNDKDAIHITRSIVRNLNRHKRMS----------VAFEKP------EQP 625
C+ SGVTDHYA++D+ A+++ R IV NLN S V F+ E+P
Sbjct: 266 CKTSGVTDHYALDDEHALYLARQIVSNLNLSATNSYNDQLMHSSQVNFQTATPPSAVEEP 325
Query: 626 RYPADELYGIVGANLKRTFNMYEVIARIVDGSKMQEFKPLYGETLICGF 772
RY A+ELYGIVG NL ++F++ EVIARIVDGS+ EFK LYGETL+CGF
Sbjct: 326 RYDAEELYGIVGPNLTKSFDVREVIARIVDGSRFTEFKKLYGETLVCGF 374
>sp|P34385|YLPC_CAEEL Hypothetical protein F02A9.4a in chromosome III
Length = 608
Score = 103 bits (258), Expect = 4e-22
Identities = 49/93 (52%), Positives = 66/93 (70%)
Frame = +2
Query: 494 CRRSGVTDHYAMNDKDAIHITRSIVRNLNRHKRMSVAFEKPEQPRYPADELYGIVGANLK 673
C SGVTD+YA NDK A+++ RS + L + ++P YPA+E+YGIVG+NLK
Sbjct: 312 CGESGVTDYYAHNDKHALYLARSCIAGLPPVEEHMTFNPNADEPLYPAEEIYGIVGSNLK 371
Query: 674 RTFNMYEVIARIVDGSKMQEFKPLYGETLICGF 772
+T+++ EVIARIVDGS+ EFK YGETL+ GF
Sbjct: 372 KTYDVREVIARIVDGSRFHEFKERYGETLVTGF 404
>sp|Q9LDD8|MCCB_ARATH Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor
(3-Methylcrotonyl-CoA carboxylase 2) (MCCase beta
subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
beta subunit)
Length = 587
Score = 66.2 bits (160), Expect = 9e-11
Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 6/99 (6%)
Frame = +2
Query: 494 CRRSGVTDHYAMNDKDAIHITRSIVRNLNRHKR--MSVAFEKP----EQPRYPADELYGI 655
C SGV+D++A ++ + I R+IV+NL+ + M F ++P Y +EL I
Sbjct: 285 CTVSGVSDYFAQDELHGLAIGRNIVKNLHMAAKQGMEGTFGSKNLVYKEPLYDINELRSI 344
Query: 656 VGANLKRTFNMYEVIARIVDGSKMQEFKPLYGETLICGF 772
+ K+ F++ +IARIVDGS+ EFK YG TL+ GF
Sbjct: 345 APVDHKQQFDVRSIIARIVDGSEFDEFKKQYGTTLVTGF 383
>sp|Q06700|GCDA_ACIFE Glutaconyl-CoA decarboxylase alpha subunit (Carboxyltransferase)
Length = 587
Score = 55.8 bits (133), Expect = 1e-07
Identities = 23/54 (42%), Positives = 37/54 (68%)
Frame = +2
Query: 608 EKPEQPRYPADELYGIVGANLKRTFNMYEVIARIVDGSKMQEFKPLYGETLICG 769
+ P+ P +PAD+LY +V N KR +++Y VIAR+ D S++ E+K YG ++ G
Sbjct: 297 DDPKAPAFPADDLYSMVPLNDKRAYDIYNVIARLFDNSELHEYKKGYGPEMVTG 350
>sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 12S subunit (Transcarboxylase
12S subunit)
Length = 611
Score = 39.3 bits (90), Expect = 0.012
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +2
Query: 518 HYAMNDKDAIH-ITRSIVRNLNRHKRMSVAFEKPEQPRYPADELYGIVGANLKRTFNMYE 694
H+ D DA I + ++ L ++ +F P P EL IV + K+ +++ +
Sbjct: 236 HFVAEDDDAAELIAKKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRD 295
Query: 695 VIARIVDGSKMQEFKPLYGETLICGF 772
VIA+IVD E K Y L+ F
Sbjct: 296 VIAKIVDWGDYLEVKAGYATNLVTAF 321
>sp|P53003|PCCB_SACER Propionyl-CoA carboxylase beta chain (PCCase) (Propanoyl-CoA:carbon
dioxide ligase)
Length = 546
Score = 34.7 bits (78), Expect = 0.30
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Frame = +2
Query: 500 RSGVTDHYAMNDKDAIHITRSIVRNL-NRHKRMSVAFEKPE-QPRYPAD-------ELYG 652
RSG + A ++ DAI + ++ L + + S F E + AD EL
Sbjct: 240 RSGNAHYLATDEDDAISYVKELLSFLPSNNLSSSPVFPGAEVEEGSVADGVGDADLELDA 299
Query: 653 IVGANLKRTFNMYEVIARIVDGSKMQEFKPLYGETLICGF 772
+V + + ++M EVI R+VD + E L+ ++CGF
Sbjct: 300 LVPDSPNQPYDMREVITRLVDEGEFLEVSALFAPNMLCGF 339
>sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 539
Score = 33.1 bits (74), Expect = 0.86
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Frame = +2
Query: 503 SGVTDHYAMNDKDAIHITRSIVRNLNRHKRMSVAFEKPEQPRYP-ADELYGIVGANLKRT 679
SGV ND DA+ R L + + + P EL IV +
Sbjct: 254 SGVAHRAFENDVDALCNLRDFFNYLPLSSQDPASVRECHDPSDRLVPELDTIVPLESTKA 313
Query: 680 FNMYEVIARIVDGSKMQEFKPLYGETLICGF 772
+NM ++I +VD + E P Y + +I GF
Sbjct: 314 YNMVDIIHSVVDEREFFEIMPNYAKNIIVGF 344
>sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 541
Score = 32.7 bits (73), Expect = 1.1
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = +2
Query: 503 SGVTDHYAMNDKDAIHITRSIVRNLNRHKRMSVAFEKPEQPRYP-ADELYGIVGANLKRT 679
SGV ND DA+ R + L + + + P EL +V +
Sbjct: 256 SGVAHRAFDNDVDALCNLREFLNFLPLSNQDPASIRECHDPSDRLVPELDTVVPLESSKA 315
Query: 680 FNMYEVIARIVDGSKMQEFKPLYGETLICGF 772
+NM ++I ++D + E P Y + ++ GF
Sbjct: 316 YNMLDIIHAVIDEREFFEIMPNYAKNIVIGF 346
>sp|Q06101|PCCB_RHOER Propionyl-CoA carboxylase beta chain (PCCase) (Propanoyl-CoA:carbon
dioxide ligase)
Length = 476
Score = 30.4 bits (67), Expect = 5.6
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Frame = +2
Query: 497 RRSGVTDHYAMNDKDAIHITRSIVRNLNRHKRMSVAFEKPEQPRYPAD----ELYGIVGA 664
++SGV A ++ DA+H R +V S+ E+ E + A+ +L ++ A
Sbjct: 187 KKSGVAHIAAHDEADALHRARRLV---------SMMCEQGEFDQRAAELGDSDLRAMMPA 237
Query: 665 NLKRTFNMYEVIARIVDG----SKMQEFKPLYGETLICGF 772
+ KR +++ ++ ++D S +E + Y +++ GF
Sbjct: 238 SAKRAYDVRPIVHEMLDNVEGESSFEELQGNYARSIVTGF 277
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,757,057
Number of Sequences: 369166
Number of extensions: 1612019
Number of successful extensions: 3624
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3620
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7212136400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)