Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_G21
(309 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y893|FOLE_CANAL Folylpolyglutamate synthase (Folylpoly... 33 0.27
sp|O13492|FOLE_NEUCR Folylpolyglutamate synthase (Folylpoly... 31 1.0
sp|Q8ZU30|KAD6_PYRAE Putative adenylate kinase (ATP-AMP tra... 31 1.0
sp|Q60393|BXG_CLOBO Botulinum neurotoxin type G precursor (... 30 1.3
sp|Q10419|MESE_LEUME Mesentericin Y105 secretion protein mesE 28 5.0
sp|O14678|ABCD4_HUMAN ATP-binding cassette sub-family D mem... 28 5.0
sp|O89016|ABCD4_MOUSE ATP-binding cassette sub-family D mem... 28 5.0
sp|Q8D2B3|SYK_WIGBR Lysyl-tRNA synthetase (Lysine--tRNA lig... 28 6.6
sp|Q83948|DPOL_NPVOP DNA polymerase 28 8.6
>sp|Q9Y893|FOLE_CANAL Folylpolyglutamate synthase (Folylpoly-gamma-glutamate synthetase)
(FPGS) (Tetrahydrofolate synthase)
(Tetrahydrofolylpolyglutamate synthase)
Length = 514
Score = 32.7 bits (73), Expect = 0.27
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = +2
Query: 56 WVELNQSISKNNYPCIAYFNCFSDI---VDWL-DESDESVQVLVVGSLHLAGCALVVL 217
W +L+ +SK + F+DI V++L D D+ +QV V GSLHL G LVVL
Sbjct: 460 WRKLDGGVSKRHV--------FADIETAVNYLKDLGDKDLQVFVCGSLHLVGGFLVVL 509
>sp|O13492|FOLE_NEUCR Folylpolyglutamate synthase (Folylpoly-gamma-glutamate synthetase)
(FPGS) (Tetrahydrofolylpolyglutamate synthase)
Length = 528
Score = 30.8 bits (68), Expect = 1.0
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 56 WVELNQSISKNNYPCIAY-FNCFSDIVDWLDESDESVQVLVVGSLHLAGCALVVLSQ 223
W L+ S + P I N +VD E ++ VQ L+ GSLHL G AL +L +
Sbjct: 469 WSTLDPSANVMLIPTIEEAINKARSLVD-TTEGEQKVQALITGSLHLVGGALGILEK 524
>sp|Q8ZU30|KAD6_PYRAE Putative adenylate kinase (ATP-AMP transphosphorylase)
Length = 194
Score = 30.8 bits (68), Expect = 1.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 98 CIAYFNCFSDIVDWLDESDES 160
C+A C SD+VDWL S+ES
Sbjct: 159 CVAGGRCHSDVVDWLGYSEES 179
>sp|Q60393|BXG_CLOBO Botulinum neurotoxin type G precursor (BoNT/G) (Bontoxilysin G)
[Contains: Botulinum neurotoxin G light chain; Botulinum
neurotoxin G heavy chain]
Length = 1297
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 308 KMSQNLFKNIMVSKSKKIVYKNVFDNFLIAITQLTHNQPNEDCQ 177
K++ + NI +SK +VY ++FDNF I T N D Q
Sbjct: 907 KLNNSENSNITAHQSKFVVYDSMFDNFSINFWVRTPKYNNNDIQ 950
>sp|Q10419|MESE_LEUME Mesentericin Y105 secretion protein mesE
Length = 457
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -2
Query: 251 YKNVFDNFLIAITQLTH--NQPNEDCQQPTLEHSHLIHPTNQQCQKNN 114
Y N+F+ ++ + LT NQ N D Q + +H I Q KNN
Sbjct: 139 YDNLFNGYMAQVDTLTSEFNQQNSDKQTADQQANHQIDVLKQGQSKNN 186
>sp|O14678|ABCD4_HUMAN ATP-binding cassette sub-family D member 4 (Peroxisomal membrane
protein 69) (PMP69) (Peroxisomal membrane protein
1-like) (PXMP1-L) (P70R)
Length = 606
Score = 28.5 bits (62), Expect = 5.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 62 ELNQSISKNNYPCIAYFNCFSDIVD 136
EL+ +SKN + CI +CF+ ++D
Sbjct: 305 ELSTLVSKNAFVCIYLISCFTQLID 329
>sp|O89016|ABCD4_MOUSE ATP-binding cassette sub-family D member 4 (Peroxisomal membrane
protein 69) (PMP69) (Peroxisomal membrane protein
1-like) (PXMP1-L) (P70R)
Length = 606
Score = 28.5 bits (62), Expect = 5.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 62 ELNQSISKNNYPCIAYFNCFSDIVD 136
EL+ +SKN + CI +CF+ ++D
Sbjct: 305 ELSTLVSKNAFVCIYLISCFTQLID 329
>sp|Q8D2B3|SYK_WIGBR Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 493
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -2
Query: 308 KMSQNLFK--NIMVSKSKKIVYKNVFDNFLIAITQLTHNQPNEDCQQPTLEH 159
K S+N FK +I+++ +K + K +NF+ T + HN P +P + H
Sbjct: 166 KKSRNTFKTRSIIINNIRKFMIK---ENFVEVETPMMHNIPGGGLSKPFITH 214
>sp|Q83948|DPOL_NPVOP DNA polymerase
Length = 985
Score = 27.7 bits (60), Expect = 8.6
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -2
Query: 287 KNIMVSKSKKIVYKNVFDNF---LIAITQLTHNQPNEDCQQPTLEHSHLIHPTNQQCQKN 117
KN+ + K I +K +F +A+ + HN Q P +E ++L Q+C+ N
Sbjct: 97 KNVYMDKINVIKFKRNGSSFGEKTMALDKFLHNANRVHMQTPVIEGTYLRFRRAQRCRNN 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,764,043
Number of Sequences: 369166
Number of extensions: 440829
Number of successful extensions: 1152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 68,354,980
effective HSP length: 71
effective length of database: 55,238,795
effective search space used: 1712402645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)