Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_G20
(658 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q06916|GUFA_MYXXA Protein gufA 112 8e-25
sp|Q8DRY7|ZUPT_STRMU Zinc transporter zupT 83 7e-16
sp|Q8FTK0|ZUPT_COREF Zinc transporter zupT 77 5e-14
sp|Q9PIN2|ZUPT_CAMJE Zinc transporter zupT 76 9e-14
sp|Q8XMG8|ZUPT_CLOPE Zinc transporter zupT 75 1e-13
sp|Q9JX23|ZUPT_NEIMA Zinc transporter zupT 75 2e-13
sp|Q9K1H6|ZUPT_NEIMB Zinc transporter zupT 74 3e-13
sp|Q8ENQ1|ZUPT_OCEIH Zinc transporter zupT 71 2e-12
sp|Q8NQK0|ZUPT_CORGL Zinc transporter zupT 71 3e-12
sp|P67471|ZUPT_SALTI Zinc transporter zupT >gi|54042978|sp|... 70 6e-12
>sp|Q06916|GUFA_MYXXA Protein gufA
Length = 254
Score = 112 bits (280), Expect = 8e-25
Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 3/170 (1%)
Frame = +3
Query: 45 DYKDNQHIAPNRKGNVSHR---LLLMMIAITIHNIPEGLXXXXXXXXXXQSKTATLSKAR 215
D ++H +G+ + LL ++A+T+HN PEGL
Sbjct: 90 DLMPHEHALKGHEGHGGTKWNSALLFVLAMTLHNFPEGLAVGVSFAAPQPEL------GL 143
Query: 216 NLALGIGIQNFPEGLAVSLPLKAAGMSLGRSVWYGQLSGLVEPLSGIFGCLAVQMISPIL 395
++ALGIG QN PEGL V+L L+A+G S R+ + L+G+VEP+ +FG LA+ + S +L
Sbjct: 144 SVALGIGAQNIPEGLVVALALRASGASASRAAFLALLTGMVEPVGALFGVLALSLSSALL 203
Query: 396 PYALSFAAGAMIFVVFDDIIPESQQMGNGHLASIFAVVGFVIMMCLDMGL 545
P+ L+FA GAM++V+ ++IPES + G A+ + GFV+ + LDM L
Sbjct: 204 PWGLAFAGGAMLYVISHEMIPESHRGGFEREATTGLMWGFVLALVLDMSL 253
>sp|Q8DRY7|ZUPT_STRMU Zinc transporter zupT
Length = 264
Score = 82.8 bits (203), Expect = 7e-16
Identities = 52/142 (36%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
Frame = +3
Query: 105 LLMMIAITIHNIPEGLXXXXXXXXXXQSKTATLSKARNLALGIGIQNFPEGLAVSLPLKA 284
L+ IAI IHN PEGL S S A + + I I N PEG+AVS+P+
Sbjct: 122 LMTAIAIGIHNFPEGLATFI-------SGLQDASIAIPIVIAIAIHNIPEGIAVSVPIYQ 174
Query: 285 AGMSLGRSVWYGQLSGLVEPLSGIFGCLAVQMISPILPYALSFA--AGAMIFVVFDDIIP 458
A S ++ Y LSGL EPL I G + I + Y F+ AG M+F+ D+++P
Sbjct: 175 ATGSKKKAFTYSFLSGLAEPLGAIIGWFLLMPIMNNIVYGAIFSAVAGIMVFISLDELLP 234
Query: 459 ESQQMGNGHLASIFAVVGFVIM 524
+++ G HLA + G +IM
Sbjct: 235 AAEEYGKHHLAIYGVISGMLIM 256
>sp|Q8FTK0|ZUPT_COREF Zinc transporter zupT
Length = 268
Score = 76.6 bits (187), Expect = 5e-14
Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Frame = +3
Query: 78 RKGNVSHRLLLMMIAITIHNIPEGLXXXXXXXXXXQSKTATLSKARNLALGIGIQNFPEG 257
R+ + +L IAI+IHN PEG + A +A+ I I N PEG
Sbjct: 117 RRSRMMRAGVLTAIAISIHNFPEGFATFVAGLTDPRI-------AIPVAVAIAIHNIPEG 169
Query: 258 LAVSLPLKAAGMSLGRSVWYGQLSGLVEPLSGIFGCLAVQMISPILPYALSFA--AGAMI 431
+AV++P++ A S G+++ + LSGL EP + G + + LSFA AG M+
Sbjct: 170 IAVAVPIREATGSRGKALKWATLSGLAEPAGAVVGFILLMPFLGPEAMGLSFAAVAGIMV 229
Query: 432 FVVFDDIIPESQQMGNGHLASIFAVVGFVIMMCLDM 539
F+ D+++P + G H A I+ +VG + +M + +
Sbjct: 230 FISLDELLPTAISSGRHHTA-IYGLVGGMAVMAVSL 264
Score = 29.3 bits (64), Expect = 9.4
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +3
Query: 348 SGIFGCLAVQMISP---ILPYALSFAAGAMIFVVFDDIIPES 464
+G+ G +AV +P L +L F+ G M+FV F +I+P++
Sbjct: 20 TGVGGVIAVARKAPGERFLAGSLGFSVGVMLFVSFVEILPKA 61
>sp|Q9PIN2|ZUPT_CAMJE Zinc transporter zupT
Length = 291
Score = 75.9 bits (185), Expect = 9e-14
Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Frame = +3
Query: 117 IAITIHNIPEGLXXXXXXXXXXQSKTATLSKARNLALGIGIQNFPEGLAVSLPLKAAGMS 296
+AI IHN PEG S L+ +A+ + I N PEGLAVSLP+ A
Sbjct: 152 LAIAIHNFPEGFATFI-------SSLDNLTLGIAIAIAVAIHNIPEGLAVSLPIYHATGD 204
Query: 297 LGRSVWYGQLSGLVEPLSGIFGCLAVQMISPILPYALSFA--AGAMIFVVFDDIIPESQQ 470
++ Y LSG EPL G L + L A+SFA AG M+F+ D+++P ++
Sbjct: 205 KKKAFIYSALSGFAEPLGAFVGALILLPFIGDLTLAISFAVIAGIMVFISLDELLPAAKT 264
Query: 471 MGNGHLASIFAVVGFVIMMCLDMGL 545
H S++ ++ + +M L + L
Sbjct: 265 YDKAH-DSLYGLIAGMAIMALSLNL 288
>sp|Q8XMG8|ZUPT_CLOPE Zinc transporter zupT
Length = 285
Score = 75.5 bits (184), Expect = 1e-13
Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 2/142 (1%)
Frame = +3
Query: 105 LLMMIAITIHNIPEGLXXXXXXXXXXQSKTATLSKARNLALGIGIQNFPEGLAVSLPLKA 284
++ +AI IHN PEGL S S A + + I I N PEG++VS+P+
Sbjct: 143 IVTALAIAIHNFPEGLATFV-------SALEGASLAIPITIAIAIHNIPEGISVSVPIFY 195
Query: 285 AGMSLGRSVWYGQLSGLVEPLSGIFGCLAVQMI--SPILPYALSFAAGAMIFVVFDDIIP 458
A ++ Y LSG+ EP+ I G ++ I L LS AG M+F+ D+++P
Sbjct: 196 ATGDKKKAFLYSFLSGMSEPIGAIIGYTLLRNIFNDITLGILLSAVAGIMVFISLDELLP 255
Query: 459 ESQQMGNGHLASIFAVVGFVIM 524
+++ G HLA + G V+M
Sbjct: 256 TARKYGEHHLAIYGLIAGMVVM 277
>sp|Q9JX23|ZUPT_NEIMA Zinc transporter zupT
Length = 269
Score = 74.7 bits (182), Expect = 2e-13
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 5/155 (3%)
Frame = +3
Query: 75 NRKGNVSHRLLLMMIAITIHNIPEGLXXXXXXXXXXQSKTATLSK---ARNLALGIGIQN 245
+++ +++ ++ AIT HN PEGL ATL LAL I I N
Sbjct: 116 SKRRHIARVGMMAAFAITAHNFPEGLATFF----------ATLENPAVGMPLALAIAIHN 165
Query: 246 FPEGLAVSLPLKAAGMSLGRSVWYGQLSGLVEPLSGIFGCLAVQ-MISP-ILPYALSFAA 419
PEG++++ P+ A S ++VW LSGL EPL G L +Q +SP + A
Sbjct: 166 IPEGISIAAPVYFATRSRKKTVWACLLSGLAEPLGAALGYLVLQPFLSPAVFGSVFGVIA 225
Query: 420 GAMIFVVFDDIIPESQQMGNGHLASIFAVVGFVIM 524
G M+F+ D+++P +++ +GH +G ++
Sbjct: 226 GVMVFLALDELLPAAKRYSDGHETVYGLTMGMAVI 260
>sp|Q9K1H6|ZUPT_NEIMB Zinc transporter zupT
Length = 269
Score = 74.3 bits (181), Expect = 3e-13
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Frame = +3
Query: 75 NRKGNVSHRLLLMMIAITIHNIPEGLXXXXXXXXXXQSKTATLSK---ARNLALGIGIQN 245
+++ +++ ++ AIT HN PEGL ATL LAL I I N
Sbjct: 116 SKRRHIARVGMMAAFAITAHNFPEGLATFF----------ATLENPAVGMPLALAIAIHN 165
Query: 246 FPEGLAVSLPLKAAGMSLGRSVWYGQLSGLVEPLSGIFGCLAVQ-MISP-ILPYALSFAA 419
PEG++++ P+ A S ++VW LSGL EPL G L +Q +SP + A
Sbjct: 166 IPEGISIAAPVYFATRSRKKTVWACLLSGLAEPLGAALGYLVLQPFLSPAVFGSVFGVIA 225
Query: 420 GAMIFVVFDDIIPESQQMGNGH 485
G M+F+ D+++P +++ +GH
Sbjct: 226 GVMVFLALDELLPAAKRYSDGH 247
>sp|Q8ENQ1|ZUPT_OCEIH Zinc transporter zupT
Length = 268
Score = 71.2 bits (173), Expect = 2e-12
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Frame = +3
Query: 72 PNRKGNVSHRLLLMMIAITIHNIPEGLXXXXXXXXXXQSKTATLSKARNLALGIGIQNFP 251
P R ++ L +A+ IHN PEG+ A +A+ + I N P
Sbjct: 115 PLRDPDLMKMGLFTALALAIHNFPEGIATFVSTLHDPSIGLA-------IAIAVAIHNIP 167
Query: 252 EGLAVSLPLKAAGMSLGRSVWYGQLSGLVEPLSGIFGCLAVQMISPILPYALSFA--AGA 425
EG+AVS+P+ A ++ Y LSGL EPL I L + L + + FA AG
Sbjct: 168 EGIAVSVPIYYATGDRKKAFKYSFLSGLAEPLGAIVAILILMPFLNDLMFGIIFAMVAGI 227
Query: 426 MIFVVFDDIIPESQQMGNGHLASIFAVVGFVIM 524
M+F+ D+++P +++ H++ + G +M
Sbjct: 228 MVFISLDELLPAARKYDEAHMSMYGVISGMALM 260
>sp|Q8NQK0|ZUPT_CORGL Zinc transporter zupT
Length = 263
Score = 70.9 bits (172), Expect = 3e-12
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Frame = +3
Query: 78 RKGNVSHRLLLMMIAITIHNIPEGLXXXXXXXXXXQSKTATLSKARNLALGIGIQNFPEG 257
R+ + +L +AI IHN PEG A +A+ I I N PEG
Sbjct: 112 RRNRMMKMGVLTALAIAIHNFPEGFATFLAGLSDPMI-------AIPVAVAIAIHNIPEG 164
Query: 258 LAVSLPLKAAGMSLGRSVWYGQLSGLVEPLSGIFG-CLAVQMISP-ILPYALSFAAGAMI 431
+AV++PL+ A S +++ + LSGL EP + G L + I P L + AG M+
Sbjct: 165 IAVAVPLREATGSRRKALGWATLSGLAEPAGALIGFLLLMPFIGPEALGLCFAAVAGVMV 224
Query: 432 FVVFDDIIPESQQMGNGHLASIFAVVGFVIM 524
F+ D+++P + G H A + G +M
Sbjct: 225 FISVDELLPTAISSGKHHTAIYGLIAGMAVM 255
>sp|P67471|ZUPT_SALTI Zinc transporter zupT
sp|P67470|ZUPT_SALTY Zinc transporter zupT
Length = 257
Score = 69.7 bits (169), Expect = 6e-12
Identities = 42/149 (28%), Positives = 81/149 (54%), Gaps = 2/149 (1%)
Frame = +3
Query: 84 GNVSHRLLLMMIAITIHNIPEGLXXXXXXXXXXQSKTATLSKARNLALGIGIQNFPEGLA 263
G++ +L+ + I++HN PEG+ + ++ L +AL + + N PEGLA
Sbjct: 103 GSIKRTAILLTLGISLHNFPEGIATFV-------TASSNLELGFGIALAVALHNIPEGLA 155
Query: 264 VSLPLKAAGMSLGRSVWYGQLSGLVEPLSGIFGCLAV-QMISPILPYALSFA-AGAMIFV 437
V+ P+ AA S ++++ +SG+ E L G+ L + ++SPI+ A+ A AG M+ +
Sbjct: 156 VAGPVYAATGSKRTAIFWAGISGMAEILGGVLAWLILGSLVSPIVMAAIMAAVAGIMVAL 215
Query: 438 VFDDIIPESQQMGNGHLASIFAVVGFVIM 524
D+++P ++++ + S + G IM
Sbjct: 216 SVDELMPLAKEIDPNNNPSYGVLCGMSIM 244
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,740,311
Number of Sequences: 369166
Number of extensions: 1724653
Number of successful extensions: 4360
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4312
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5462583840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)