Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_G15
(421 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase II (Nucleolar ... 34 0.11
sp|Q10637|PG24_MYCTU Hypothetical PE-PGRS family protein PE... 33 0.18
sp|P46553|YKG3_CAEEL Hypothetical protein B0285.3 in chromo... 33 0.31
sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotei... 31 0.91
sp|P0A687|WA22_MYCBO WAG22 antigen precursor >gi|61249984|s... 31 0.91
sp|O53553|PG54_MYCTU Hypothetical PE-PGRS family protein PE... 30 2.0
sp|P56877|PG03_MYCTU Hypothetical PE-PGRS family protein PE... 30 2.0
sp|P27952|RS2_RAT 40S ribosomal protein S2 >gi|46397787|sp|... 30 2.6
sp|Q01511|MTC1_PBCVC Modification methylase CviBI (Adenine-... 29 3.5
sp|Q6AYA1|NOLA1_RAT H/ACA ribonucleoprotein complex subunit... 29 3.5
>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase II (Nucleolar RNA helicase Gu) (RH II/Gu)
(Gu-alpha) (DEAD-box protein 21)
Length = 851
Score = 34.3 bits (77), Expect = 0.11
Identities = 19/41 (46%), Positives = 21/41 (51%)
Frame = +2
Query: 17 GSSAGFLRRGNNFNRGDMRGHGQVGGSNNNKRLIPAGGNRG 139
GS F RG + RG GQ GGS N + P GGNRG
Sbjct: 802 GSRGAF--RGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNRG 840
>sp|Q10637|PG24_MYCTU Hypothetical PE-PGRS family protein PE_PGRS24 precursor
Length = 603
Score = 33.5 bits (75), Expect = 0.18
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 2 GNYSRGSSAGFLRRGNNFNRG--DMRGHGQVGGSNNNKRLIPAGGNRG 139
GN +G AG + G + G + +G VGGS N LI GGN G
Sbjct: 527 GNGGKGGKAGMVGNGGDGGAGGASVVANGGVGGSGGNATLIGNGGNGG 574
>sp|P46553|YKG3_CAEEL Hypothetical protein B0285.3 in chromosome III
Length = 166
Score = 32.7 bits (73), Expect = 0.31
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 2 GNYSRGSSAGFLRRGNNFNRGDMRG---HGQVGGSNNNKRLIPAGGNRGII 145
GNY G G + N NRG RG G+ GG NK P N+ II
Sbjct: 74 GNYRGGGGGGGGNQNNYGNRGRGRGGFDRGRGGGGGGNKNFGPIDANKCII 124
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 (hnRNP A3(A))
Length = 373
Score = 31.2 bits (69), Expect = 0.91
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +2
Query: 2 GNYSRGSSAGFLRRGNNFNRGDMRGHGQVGGSNNNKRLIPAGGNRG 139
GN+ RG GF RG G G G GG + GGN G
Sbjct: 228 GNFGRGGGGGFGNRGGYGGGGGRGGGGYGGGGDGYNGFGGDGGNYG 273
Score = 28.9 bits (63), Expect = 4.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 17 GSSAGFLRRGNNFNRGDMRGHGQVGGSN-NNKRLIPAGGNRG 139
G + F+ RG N+ GD G+ GG N+ GG RG
Sbjct: 210 GGGSNFMGRGGNYGGGDGGNFGRGGGGGFGNRGGYGGGGGRG 251
>sp|P0A687|WA22_MYCBO WAG22 antigen precursor
sp|P0A686|WA22_MYCTU WAG22 antigen precursor
Length = 914
Score = 31.2 bits (69), Expect = 0.91
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +2
Query: 44 GNNFNRGDMRGHGQVGGSNNNKRLIPAGGNRGI 142
GN N G+ G G VGG+ N LI GG GI
Sbjct: 445 GNGGNGGESGGTGGVGGAGGNAVLIGNGGEGGI 477
>sp|O53553|PG54_MYCTU Hypothetical PE-PGRS family protein PE_PGRS54 precursor
Length = 1901
Score = 30.0 bits (66), Expect = 2.0
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 17 GSSAGFLRRGNNFNRGDMRGHGQVGGSNNNKRLIPAGGNRG 139
G + G G N G + G G GG+N N L GGN G
Sbjct: 1770 GGNGGAGGAGGNGGAGGLGGGGGTGGTNGNGGLGGGGGNGG 1810
>sp|P56877|PG03_MYCTU Hypothetical PE-PGRS family protein PE_PGRS3 precursor
Length = 957
Score = 30.0 bits (66), Expect = 2.0
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +2
Query: 5 NYSRGSSAGFLRRGNNFNRGDMRGHGQVGGSNNNKRLIPAGGNRG 139
N G + GF G N G + G G GG+ N AGGN G
Sbjct: 696 NGGAGGAGGFNAAGGNGGNGGLFGTGGTGGAGTN---FGAGGNGG 737
>sp|P27952|RS2_RAT 40S ribosomal protein S2
sp|P25444|RS2_MOUSE 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 29.6 bits (65), Expect = 2.6
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 2 GNYSRGSSAGFLRRGNNFNRGDMRGHGQVGGSNNNKRLIP 121
G + G +G RG RG RG G GG +K IP
Sbjct: 23 GGFRGGFGSGLRGRGRGRGRGRGRGRGARGGKAEDKEWIP 62
>sp|Q01511|MTC1_PBCVC Modification methylase CviBI (Adenine-specific methyltransferase
CviBI) (M.CviBI)
Length = 260
Score = 29.3 bits (64), Expect = 3.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 341 YRFFSLIKTNMYNILKIT*ILRNTFNYV 258
Y F +I YNILK T IL +F+Y+
Sbjct: 136 YNFEDIINEEYYNILKDTIILEKSFDYI 163
>sp|Q6AYA1|NOLA1_RAT H/ACA ribonucleoprotein complex subunit 1 (Nucleolar protein family
A member 1)
Length = 226
Score = 29.3 bits (64), Expect = 3.5
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +2
Query: 2 GNYSRGSSAGFLRRGNNFNRGDMRGHGQVGGSNNNKRLIPAGGNRG 139
G ++RG G RG N RG G GG N R GG RG
Sbjct: 9 GGFNRGGGGGGFNRGGGSN-NHFRGGGGGGGGGGNFR----GGGRG 49
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,737,759
Number of Sequences: 369166
Number of extensions: 703324
Number of successful extensions: 1526
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2002648600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)