Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_G05-1
(384 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VMV6|SELT_DROME SelT-like protein precursor 32 0.59
sp|P62341|SELT_HUMAN Selenoprotein T precursor 32 0.59
sp|P62342|SELT_MOUSE Selenoprotein T precursor 32 0.59
sp|Q14517|FATH_HUMAN Cadherin-related tumor suppressor homo... 30 1.7
sp|P17030|ZNF25_HUMAN Zinc finger protein 25 (Zinc finger p... 28 8.5
sp|P16170|NCA11_XENLA Neural cell adhesion molecule 1-A pre... 28 8.5
sp|Q10475|IF4G_SCHPO Eukaryotic translation initiation fact... 28 8.5
sp|P17789|TTKB_DROME Tramtrack protein, beta isoform (Tramt... 28 8.5
sp|P18718|ZG3_XENLA Gastrula zinc finger protein XLCGF3.1 28 8.5
>sp|Q9VMV6|SELT_DROME SelT-like protein precursor
Length = 198
Score = 31.6 bits (70), Expect = 0.59
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +1
Query: 67 STSFEVTVNDCLVFSKLKCGGFPVVEDVIKLL 162
S +FE+T+ND V+SKL+ G FP E + +++
Sbjct: 149 SGAFEITLNDVPVWSKLQTGRFPSPEVLFQII 180
>sp|P62341|SELT_HUMAN Selenoprotein T precursor
Length = 195
Score = 31.6 bits (70), Expect = 0.59
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +1
Query: 73 SFEVTVNDCLVFSKLKCGGFPVVEDVIKLL 162
+FE+T+ND V+SKL+ G P ++ ++++L
Sbjct: 148 AFEITLNDVPVWSKLESGHLPSMQQLVQIL 177
>sp|P62342|SELT_MOUSE Selenoprotein T precursor
Length = 195
Score = 31.6 bits (70), Expect = 0.59
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +1
Query: 73 SFEVTVNDCLVFSKLKCGGFPVVEDVIKLL 162
+FE+T+ND V+SKL+ G P ++ ++++L
Sbjct: 148 AFEITLNDVPVWSKLESGHLPSMQQLVQIL 177
>sp|Q14517|FATH_HUMAN Cadherin-related tumor suppressor homolog precursor (Fat protein
homolog)
Length = 4590
Score = 30.0 bits (66), Expect = 1.7
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 209 LQVVNK*GFSPAWTSRNNLITSSTTGNPPHFSFENTKQSL-TVTSNEVDRPTS*LH*IPV 33
+ VV F P +S + L+ T+GNP F + K L T TS ++DR H + V
Sbjct: 1156 VSVVQIEAFDPDSSSNDKLMYKITSGNPQGFFSIHPKTGLITTTSRKLDREQQDEHILEV 1215
Query: 32 T 30
T
Sbjct: 1216 T 1216
>sp|P17030|ZNF25_HUMAN Zinc finger protein 25 (Zinc finger protein KOX19)
Length = 456
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 118 KCGGFPVVEDVIKLLRDVQAGEKPYLLTTCSAPYS 222
+CG V V++L + GEKPY C +S
Sbjct: 374 ECGKSFAVNSVLRLHQRTHTGEKPYACKECGKSFS 408
>sp|P16170|NCA11_XENLA Neural cell adhesion molecule 1-A precursor
Length = 1088
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 170 TSRNNLITSSTTGNPPHFSFENTKQSLTVTSNEVDRPTS 54
TS +TSST P NT QS+ T ++ + PT+
Sbjct: 837 TSETTTLTSSTAPPPTTAPDSNTIQSIQATPSKAEAPTT 875
>sp|Q10475|IF4G_SCHPO Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma)
(eIF-4G)
Length = 1403
Score = 27.7 bits (60), Expect = 8.5
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 197 NK*GFSPAWTSRNNLITSSTTGNPPHFSFE-NTKQSLTVTSNEVDRPTS 54
NK G S +++S++ + SS T NPPH K + T+ + RPT+
Sbjct: 188 NKSGVS-SYSSKSQSVNSSVTSNPPHTEEPVAAKPEASSTATKGPRPTT 235
>sp|P17789|TTKB_DROME Tramtrack protein, beta isoform (Tramtrack p69) (Fushi tarazu
repressor protein)
Length = 643
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 152 ITSSTTGNPPHFSFENTKQSLTVTSNEVDRPTS 54
++ ++T PP S +N+ QSL TSN + +S
Sbjct: 585 VSGASTPPPPDLSGQNSNQSLPATSNALSTSSS 617
>sp|P18718|ZG3_XENLA Gastrula zinc finger protein XLCGF3.1
Length = 196
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 106 FSKLKCGGFPVVEDVIKLLRDVQAGEKPYLLTTCSAPYS 222
F+ ++CG + +KL GEKP+ T CS +S
Sbjct: 62 FTCIECGKGFSINRTLKLHYMTHTGEKPFTCTECSKGFS 100
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,670,234
Number of Sequences: 369166
Number of extensions: 759168
Number of successful extensions: 2617
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2617
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)