Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_F12
(806 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P54253|ATX1_HUMAN Ataxin-1 (Spinocerebellar ataxia type ... 73 1e-12
sp|Q63540|ATX1_RAT Ataxin-1 (Spinocerebellar ataxia type 1 ... 73 1e-12
sp|P54254|ATX1_MOUSE Ataxin-1 (Spinocerebellar ataxia type ... 73 1e-12
sp|Q5DRB8|PCDG2_PANTR Protocadherin gamma A2 precursor (PCD... 31 4.6
sp|Q9Y5H1|PCDG2_HUMAN Protocadherin gamma A2 precursor (PCD... 30 5.9
sp|P44708|GLMS_HAEIN Glucosamine--fructose-6-phosphate amin... 30 5.9
sp|Q971D7|SYFA_SULTO Phenylalanyl-tRNA synthetase alpha cha... 30 7.8
>sp|P54253|ATX1_HUMAN Ataxin-1 (Spinocerebellar ataxia type 1 protein)
Length = 816
Score = 72.8 bits (177), Expect = 1e-12
Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 12/139 (8%)
Frame = +2
Query: 140 FQKGRLIKMSDGELKVIESLSASDFEKSCKSHDGMALVSSEVKLIEVSHSDNTARIQL-- 313
F KG +I++++GELK +E L DF +S + + + + SS V+ IE SHS A IQ
Sbjct: 575 FMKGSIIQLANGELKKVEDLKTEDFIQSAEISNDLKIDSSTVERIEDSHSPGVAVIQFAV 634
Query: 314 -NHDGRSSVIVVPVAKPFFTRDSGWAAIDPEACLNKYNLHATKLQLNNICFCL------- 469
H + SV V+ V PFF GW++ PE ++L +KL + ++C L
Sbjct: 635 GEHRAQVSVEVL-VEYPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCISLTLKNLKN 693
Query: 470 --VKKKLPFDEQNSLINSS 520
VKK P D + L+ S
Sbjct: 694 GSVKKGQPVDPASVLLKHS 712
>sp|Q63540|ATX1_RAT Ataxin-1 (Spinocerebellar ataxia type 1 protein homolog)
Length = 789
Score = 72.8 bits (177), Expect = 1e-12
Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Frame = +2
Query: 140 FQKGRLIKMSDGELKVIESLSASDFEKSCKSHDGMALVSSEVKLIEVSHSDNTARIQL-- 313
F KG +I++++GELK +E L DF +S + + + + SS V+ IE SHS A IQ
Sbjct: 548 FMKGSIIQLANGELKKVEDLKTEDFIQSAEISNDLKIDSSTVERIEDSHSPGVAVIQFAV 607
Query: 314 -NHDGRSSVIVVPVAKPFFTRDSGWAAIDPEACLNKYNLHATKLQLNNICFCL------- 469
H + SV V+ V PFF GW++ PE ++L +KL + ++C L
Sbjct: 608 GEHRAQVSVEVL-VEYPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCISLTLKNLKN 666
Query: 470 --VKKKLPFDEQNSLI 511
VKK P D ++L+
Sbjct: 667 GSVKKGQPVDPASALL 682
>sp|P54254|ATX1_MOUSE Ataxin-1 (Spinocerebellar ataxia type 1 protein homolog)
Length = 792
Score = 72.8 bits (177), Expect = 1e-12
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Frame = +2
Query: 140 FQKGRLIKMSDGELKVIESLSASDFEKSCKSHDGMALVSSEVKLIEVSHSDNTARIQL-- 313
F KG +I++++GELK +E L DF +S + + + + SS V+ IE SHS A IQ
Sbjct: 550 FMKGSIIQLANGELKKVEDLKTEDFIQSAEISNDLKIHSSTVERIEESHSPGVAVIQFAV 609
Query: 314 -NHDGRSSVIVVPVAKPFFTRDSGWAAIDPEACLNKYNLHATKLQLNNICFCLVKKKL 484
H + SV V+ V PFF GW++ PE ++L +KL + ++C L K L
Sbjct: 610 GEHRAQVSVEVL-VEYPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCISLTLKNL 666
>sp|Q5DRB8|PCDG2_PANTR Protocadherin gamma A2 precursor (PCDH-gamma-A2)
Length = 932
Score = 30.8 bits (68), Expect = 4.6
Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 3/157 (1%)
Frame = +2
Query: 53 TLQNTNFTPRHMASVIRKLSENSNDIQEPFQKGRLIKMSDGELKVIESLSASD---FEKS 223
T+ T+ + A V+ L ++ + E F+ +K + GEL +I+ L D E
Sbjct: 263 TVTATDADEGYYAQVVYFLEKSPGETSEVFE----LKSTSGELTIIKDLDYEDATFHEID 318
Query: 224 CKSHDGMALVSSEVKLIEVSHSDNTARIQLNHDGRSSVIVVPVAKPFFTRDSGWAAIDPE 403
++ DG L++ ++ V ++ A SSV + DS P
Sbjct: 319 IEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSV----------SEDSL-----PG 363
Query: 404 ACLNKYNLHATKLQLNNICFCLVKKKLPFDEQNSLIN 514
+ +N+H N C + + LPF + S+ N
Sbjct: 364 TIIGLFNVHDRDSGQNAFTTCSLPENLPFKLEKSVDN 400
>sp|Q9Y5H1|PCDG2_HUMAN Protocadherin gamma A2 precursor (PCDH-gamma-A2)
Length = 932
Score = 30.4 bits (67), Expect = 5.9
Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 3/157 (1%)
Frame = +2
Query: 53 TLQNTNFTPRHMASVIRKLSENSNDIQEPFQKGRLIKMSDGELKVIESLSASD---FEKS 223
T+ T+ + A V+ L ++ + E F+ +K + GEL +I+ L D E
Sbjct: 263 TVTATDADEGYYAQVVYFLEKSPGETSEVFE----LKSTSGELTIIKDLDYEDATFHEID 318
Query: 224 CKSHDGMALVSSEVKLIEVSHSDNTARIQLNHDGRSSVIVVPVAKPFFTRDSGWAAIDPE 403
++ DG L++ ++ V ++ A SSV + DS P
Sbjct: 319 IEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSV----------SEDSL-----PG 363
Query: 404 ACLNKYNLHATKLQLNNICFCLVKKKLPFDEQNSLIN 514
+ +N+H N C + + LPF + S+ N
Sbjct: 364 TIIGLFNVHDRDSGQNAFTTCSLPEDLPFKLEKSVDN 400
>sp|P44708|GLMS_HAEIN Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]
(Hexosephosphate aminotransferase)
(D-fructose-6-phosphate amidotransferase) (GFAT)
(L-glutamine-D-fructose-6-phosphate amidotransferase)
(Glucosamine-6-phosphate synthase)
Length = 610
Score = 30.4 bits (67), Expect = 5.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 540 HNGLLENEELIREFCSSNGSFFLTR 466
HNG++EN E +RE S G FL++
Sbjct: 98 HNGIIENHEELRELLKSRGYVFLSQ 122
>sp|Q971D7|SYFA_SULTO Phenylalanyl-tRNA synthetase alpha chain (Phenylalanine--tRNA
ligase alpha chain) (PheRS)
Length = 469
Score = 30.0 bits (66), Expect = 7.8
Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 5/173 (2%)
Frame = +2
Query: 35 IYDPSQTLQNTNFTPRHMASVIRK--LSENSNDIQEPFQKGRLIKMSDGELKVIESLS-- 202
++ SQ L+ + VI+ E ++E F + +L+K+ DG+ K I L
Sbjct: 35 VFSISQLLKEKGYIEVEEKKVIKYELTDEGKRRLKEGFPEEKLVKLLDGKEKKIHELKDK 94
Query: 203 -ASDFEKSCKSHDGMALVSSEVKLIEVSHSDNTARIQLNHDGRSSVIVVPVAKPFFTRDS 379
DFE I + + ++++ D V+P+ K + ++
Sbjct: 95 LGRDFE------------------ISIGWAKRKGLVKIDGD-----TVIPLVKDYEAKEE 131
Query: 380 GWAAIDPEACLNKYNLHATKLQLNNICFCLVKKKLPFDEQNSLINSSFSKRPL 538
A I+PE NK +I L+ +KL ++ ++N + PL
Sbjct: 132 KEALINPEKA-NK-----------DILQQLLNRKLLIKKEEKILNIRLIREPL 172
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,320,814
Number of Sequences: 369166
Number of extensions: 1779474
Number of successful extensions: 4029
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4025
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7666799535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)